Wall clock time and date at job start Tue Mar 31 2020 00:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21325 * 120.00226 * 2 1 4 4 C 1.46625 * 119.99727 * 179.97438 * 2 1 3 5 5 C 1.38612 * 126.51537 * 359.97438 * 4 2 1 6 6 N 1.34105 * 108.34614 * 180.02562 * 5 4 2 7 7 H 0.97001 * 125.34826 * 180.02562 * 6 5 4 8 8 C 1.37841 * 109.30844 * 0.02562 * 6 5 4 9 9 C 1.46836 * 125.80414 * 179.97438 * 8 6 5 10 10 O 1.21682 * 119.99959 * 180.02562 * 9 8 6 11 11 N 1.34777 * 120.00048 * 0.02562 * 9 8 6 12 12 C 1.46506 * 119.99873 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47035 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46911 * 300.00027 * 13 12 11 15 15 C 1.53001 * 109.46963 * 59.99511 * 13 12 11 16 16 C 1.50696 * 109.47300 * 179.97438 * 13 12 11 17 17 H 1.07999 * 119.99822 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47118 * 89.99790 * 20 18 16 22 22 H 1.48499 * 109.47134 * 210.00310 * 20 18 16 23 23 H 1.48507 * 109.46904 * 330.00133 * 20 18 16 24 24 C 1.36247 * 108.39334 * 0.24001 * 8 6 5 25 25 H 1.09004 * 109.46867 * 270.00354 * 1 2 3 26 26 H 1.09004 * 109.46786 * 30.00156 * 1 2 3 27 27 H 1.08993 * 109.47304 * 150.00269 * 1 2 3 28 28 H 1.07998 * 125.82693 * 0.03240 * 5 4 2 29 29 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 30 30 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 31 31 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 32 32 H 1.09002 * 109.47398 * 60.00028 * 14 13 12 33 33 H 1.09001 * 109.47194 * 180.02562 * 14 13 12 34 34 H 1.09000 * 109.46968 * 300.00009 * 14 13 12 35 35 H 1.09004 * 109.47086 * 60.00354 * 15 13 12 36 36 H 1.09001 * 109.46652 * 180.02562 * 15 13 12 37 37 H 1.08992 * 109.47514 * 300.00067 * 15 13 12 38 38 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 39 39 H 1.08001 * 126.50923 * 179.76254 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2400 -1.2698 0.0006 5 6 1.6876 -2.5411 0.0016 6 7 2.6868 -3.4356 0.0024 7 1 2.5773 -4.3994 0.0029 8 6 3.8941 -2.7703 0.0025 9 6 5.2212 -3.3987 0.0037 10 8 6.2220 -2.7066 0.0041 11 7 5.3307 -4.7420 0.0045 12 6 6.6549 -5.3689 0.0063 13 6 6.4985 -6.8909 0.0075 14 6 5.7277 -7.3234 1.2564 15 6 5.7300 -7.3256 -1.2421 16 6 7.8605 -7.5358 0.0088 17 1 8.7488 -6.9216 0.0083 18 6 7.9726 -8.9100 0.0105 19 7 6.8909 -9.6580 0.0105 20 14 9.6609 -9.7095 0.0128 21 1 10.1072 -9.9196 1.4135 22 1 9.5899 -11.0180 -0.6858 23 1 10.6277 -8.8262 -0.6875 24 6 3.6466 -1.4305 0.0071 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5137 28 1 0.6326 -2.7719 0.0017 29 1 4.5329 -5.2937 0.0046 30 1 7.2042 -5.0604 -0.8832 31 1 7.2021 -5.0595 0.8968 32 1 4.7425 -6.8569 1.2550 33 1 5.6166 -8.4077 1.2575 34 1 6.2751 -7.0137 2.1466 35 1 6.2791 -7.0175 -2.1318 36 1 5.6182 -8.4098 -1.2409 37 1 4.7449 -6.8592 -1.2434 38 1 6.9696 -10.6248 0.0114 39 1 4.3835 -0.6410 0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:24 Heat of formation + Delta-G solvation = -42.470634 kcal Electronic energy + Delta-G solvation = -21127.178664 eV Core-core repulsion = 17842.292746 eV Total energy + Delta-G solvation = -3284.885917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.63987 -39.14949 -38.58658 -36.44715 -33.49573 -31.93857 -30.97877 -30.69168 -28.82248 -25.85430 -25.79931 -25.08130 -23.11948 -22.30116 -20.28952 -19.25420 -18.89827 -18.37479 -16.23518 -15.73046 -15.45088 -15.43333 -15.25529 -14.84172 -14.74321 -14.61342 -13.93887 -13.59973 -13.36374 -12.98999 -12.78921 -12.50736 -12.38020 -12.30804 -12.29637 -11.50663 -11.29998 -10.94587 -10.76299 -10.50351 -10.29281 -9.96003 -9.81498 -9.75641 -9.40569 -9.28709 -8.89830 -8.71556 -8.48168 -8.35425 -6.10389 -4.20430 1.18706 1.56276 2.79337 3.03217 3.23797 3.30993 3.34499 3.50582 3.56337 4.14662 4.34340 4.60379 4.82281 4.91817 4.99885 5.16935 5.18418 5.30887 5.54756 5.82732 5.94632 6.07585 6.21787 6.34177 6.40614 6.56300 6.64553 6.66275 6.80814 6.84443 6.90057 7.01530 7.23352 7.43675 7.56736 7.60753 7.85998 7.89783 8.03868 8.28428 8.48475 8.80221 9.45998 10.91244 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046517 B = 0.003222 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.783293 B = 8689.394871 C = 9094.817097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.423 3.577 3 O -0.472 6.472 4 C -0.273 4.273 5 C 0.083 3.917 6 N -0.522 5.522 7 H 0.423 0.577 8 C -0.051 4.051 9 C 0.576 3.424 10 O -0.534 6.534 11 N -0.715 5.715 12 C 0.131 3.869 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.067 3.933 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.056 4.056 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.184 0.816 29 H 0.391 0.609 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.002 0.998 33 H 0.087 0.913 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.002 0.998 38 H 0.260 0.740 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.545 9.028 0.043 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.302 3.698 3 O -0.348 6.348 4 C -0.281 4.281 5 C -0.060 4.060 6 N -0.116 5.116 7 H 0.261 0.739 8 C -0.162 4.162 9 C 0.361 3.639 10 O -0.411 6.411 11 N -0.365 5.365 12 C 0.009 3.991 13 C 0.055 3.945 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.526 5.526 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.080 4.080 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.201 0.799 29 H 0.225 0.775 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.021 0.979 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.021 0.979 38 H 0.071 0.929 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.442 9.681 0.036 17.386 hybrid contribution 0.301 -1.421 0.020 1.453 sum -14.140 8.260 0.057 16.376 Atomic orbital electron populations 1.22192 0.94165 1.04513 1.04422 1.21539 0.90844 0.86747 0.70668 1.90557 1.72191 1.34136 1.37936 1.20310 0.94328 0.93770 1.19670 1.22575 0.93886 0.88256 1.01268 1.41883 1.05816 1.09666 1.54246 0.73863 1.20444 0.85331 0.92612 1.17767 1.17125 0.86579 0.82623 0.77556 1.90834 1.36500 1.62838 1.50961 1.46225 1.11347 1.05319 1.73624 1.21804 0.80964 0.95366 1.00945 1.18367 0.96126 0.87208 0.92773 1.21843 0.95044 1.04217 0.97735 1.21840 0.95044 1.04210 0.97733 1.20974 0.91188 0.91396 1.50980 0.92303 1.24877 0.96728 0.97213 0.94656 1.69787 1.27304 1.04919 1.50544 0.86548 0.84339 0.78710 0.78170 1.20660 1.21232 1.19836 1.21220 0.94898 0.94037 0.97881 0.88755 0.89719 0.89965 0.79915 0.77458 0.92297 0.92311 0.97886 0.89454 0.95271 0.95257 0.89462 0.97892 0.92946 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 10.02 36.00 0.36 -0.81 16 2 C 0.42 4.61 7.24 -30.93 -0.22 4.39 16 3 O -0.47 -7.12 17.67 5.52 0.10 -7.03 16 4 C -0.27 -3.04 6.12 -105.11 -0.64 -3.69 16 5 C 0.08 0.64 11.28 -16.42 -0.19 0.45 16 6 N -0.52 -4.87 5.90 -9.24 -0.05 -4.93 16 7 H 0.42 2.88 8.13 -40.82 -0.33 2.55 16 8 C -0.05 -0.70 6.98 -82.40 -0.58 -1.28 16 9 C 0.58 10.03 7.79 -12.78 -0.10 9.93 16 10 O -0.53 -11.36 16.86 5.21 0.09 -11.28 16 11 N -0.72 -12.07 4.95 -61.56 -0.31 -12.38 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 13 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 14 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 15 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 16 C -0.51 -12.91 8.01 -34.44 -0.28 -13.18 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 19 N -0.89 -22.92 9.35 55.43 0.52 -22.40 16 20 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 C -0.06 -0.79 10.37 -39.03 -0.40 -1.20 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.29 7.20 -51.93 -0.37 -0.09 16 28 H 0.18 0.54 7.49 -52.49 -0.39 0.14 16 29 H 0.39 5.63 5.24 -40.82 -0.21 5.42 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 33 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 37 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 38 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 39 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -31.71 326.58 -6.55 -38.25 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.16 Total: 4.46 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.63 Total: -4.92 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.16 Total: -39.70 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.19 Total: -18.30 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.71 -6.55 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.216 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds