Wall clock time and date at job start Tue Mar 31 2020 00:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21325 * 120.00226 * 2 1 4 4 C 1.46625 * 119.99727 * 179.97438 * 2 1 3 5 5 C 1.38612 * 126.51537 * 359.97438 * 4 2 1 6 6 N 1.34105 * 108.34614 * 180.02562 * 5 4 2 7 7 H 0.97001 * 125.34826 * 180.02562 * 6 5 4 8 8 C 1.37841 * 109.30844 * 0.02562 * 6 5 4 9 9 C 1.46836 * 125.80414 * 179.97438 * 8 6 5 10 10 O 1.21682 * 119.99959 * 180.02562 * 9 8 6 11 11 N 1.34777 * 120.00048 * 0.02562 * 9 8 6 12 12 C 1.46506 * 119.99873 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47035 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46911 * 300.00027 * 13 12 11 15 15 C 1.53001 * 109.46963 * 59.99511 * 13 12 11 16 16 C 1.50696 * 109.47300 * 179.97438 * 13 12 11 17 17 H 1.07999 * 119.99822 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47118 * 89.99790 * 20 18 16 22 22 H 1.48499 * 109.47134 * 210.00310 * 20 18 16 23 23 H 1.48507 * 109.46904 * 330.00133 * 20 18 16 24 24 C 1.36247 * 108.39334 * 0.24001 * 8 6 5 25 25 H 1.09004 * 109.46867 * 270.00354 * 1 2 3 26 26 H 1.09004 * 109.46786 * 30.00156 * 1 2 3 27 27 H 1.08993 * 109.47304 * 150.00269 * 1 2 3 28 28 H 1.07998 * 125.82693 * 0.03240 * 5 4 2 29 29 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 30 30 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 31 31 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 32 32 H 1.09002 * 109.47398 * 60.00028 * 14 13 12 33 33 H 1.09001 * 109.47194 * 180.02562 * 14 13 12 34 34 H 1.09000 * 109.46968 * 300.00009 * 14 13 12 35 35 H 1.09004 * 109.47086 * 60.00354 * 15 13 12 36 36 H 1.09001 * 109.46652 * 180.02562 * 15 13 12 37 37 H 1.08992 * 109.47514 * 300.00067 * 15 13 12 38 38 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 39 39 H 1.08001 * 126.50923 * 179.76254 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2400 -1.2698 0.0006 5 6 1.6876 -2.5411 0.0016 6 7 2.6868 -3.4356 0.0024 7 1 2.5773 -4.3994 0.0029 8 6 3.8941 -2.7703 0.0025 9 6 5.2212 -3.3987 0.0037 10 8 6.2220 -2.7066 0.0041 11 7 5.3307 -4.7420 0.0045 12 6 6.6549 -5.3689 0.0063 13 6 6.4985 -6.8909 0.0075 14 6 5.7277 -7.3234 1.2564 15 6 5.7300 -7.3256 -1.2421 16 6 7.8605 -7.5358 0.0088 17 1 8.7488 -6.9216 0.0083 18 6 7.9726 -8.9100 0.0105 19 7 6.8909 -9.6580 0.0105 20 14 9.6609 -9.7095 0.0128 21 1 10.1072 -9.9196 1.4135 22 1 9.5899 -11.0180 -0.6858 23 1 10.6277 -8.8262 -0.6875 24 6 3.6466 -1.4305 0.0071 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5137 28 1 0.6326 -2.7719 0.0017 29 1 4.5329 -5.2937 0.0046 30 1 7.2042 -5.0604 -0.8832 31 1 7.2021 -5.0595 0.8968 32 1 4.7425 -6.8569 1.2550 33 1 5.6166 -8.4077 1.2575 34 1 6.2751 -7.0137 2.1466 35 1 6.2791 -7.0175 -2.1318 36 1 5.6182 -8.4098 -1.2409 37 1 4.7449 -6.8592 -1.2434 38 1 6.9696 -10.6248 0.0114 39 1 4.3835 -0.6410 0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:23 Heat of formation + Delta-G solvation = -64.377019 kcal Electronic energy + Delta-G solvation = -21128.128596 eV Core-core repulsion = 17842.292746 eV Total energy + Delta-G solvation = -3285.835850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.57095 -40.46326 -39.59420 -38.14628 -35.14873 -33.07171 -32.49147 -31.55431 -29.68796 -27.59309 -27.50089 -26.80696 -23.87169 -23.58999 -21.31755 -20.73346 -20.29897 -19.30727 -17.91153 -17.10126 -16.77880 -16.60835 -16.39814 -16.19230 -15.87905 -15.57326 -15.02141 -14.95123 -14.78134 -14.45941 -14.32644 -14.04744 -13.26457 -13.23358 -13.13257 -12.92791 -12.84392 -12.72105 -12.62693 -12.28350 -12.16207 -11.52555 -11.46158 -11.14860 -10.74730 -10.69399 -10.42793 -10.24621 -10.12391 -9.37432 -8.05281 -6.20298 0.40864 0.47974 1.41076 1.44676 1.52314 1.96851 2.10837 2.16820 2.38910 2.46222 3.18915 3.40510 3.83166 3.95883 4.15719 4.30711 4.41194 4.46187 4.64036 4.68564 4.81904 4.87187 4.94266 4.97480 5.00545 5.05627 5.15794 5.25656 5.32742 5.48060 5.51118 5.58225 5.64561 5.65780 6.13496 6.17780 6.32848 6.41029 6.54784 6.81029 6.83007 7.12118 7.47548 8.93653 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046517 B = 0.003222 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.783293 B = 8689.394871 C = 9094.817097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.420 3.580 3 O -0.532 6.532 4 C -0.304 4.304 5 C 0.144 3.856 6 N -0.508 5.508 7 H 0.439 0.561 8 C -0.074 4.074 9 C 0.576 3.424 10 O -0.585 6.585 11 N -0.703 5.703 12 C 0.146 3.854 13 C 0.053 3.947 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.531 4.531 17 H 0.043 0.957 18 C 0.031 3.969 19 N -0.897 5.897 20 Si 0.943 3.057 21 H -0.279 1.279 22 H -0.282 1.282 23 H -0.278 1.278 24 C -0.074 4.074 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.251 0.749 29 H 0.406 0.594 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.261 0.739 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.349 8.098 0.061 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.304 3.696 3 O -0.413 6.413 4 C -0.310 4.310 5 C -0.001 4.001 6 N -0.103 5.103 7 H 0.281 0.719 8 C -0.185 4.185 9 C 0.364 3.636 10 O -0.465 6.465 11 N -0.354 5.354 12 C 0.023 3.977 13 C 0.052 3.948 14 C -0.179 4.179 15 C -0.179 4.179 16 C -0.570 4.570 17 H 0.061 0.939 18 C -0.169 4.169 19 N -0.536 5.536 20 Si 0.770 3.230 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.203 1.203 24 C -0.100 4.100 25 H 0.133 0.867 26 H 0.101 0.899 27 H 0.138 0.862 28 H 0.267 0.733 29 H 0.243 0.757 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.284 8.694 0.055 20.245 hybrid contribution 1.420 -1.100 0.017 1.797 sum -16.863 7.593 0.072 18.494 Atomic orbital electron populations 1.22218 0.89535 1.06340 1.06192 1.22356 0.93228 0.85608 0.68452 1.90545 1.73784 1.35929 1.41040 1.20538 0.92873 0.95928 1.21704 1.23512 0.95777 0.85950 0.94855 1.41839 1.04391 1.10728 1.53372 0.71885 1.19674 0.85278 0.92445 1.21092 1.17560 0.87594 0.82238 0.76159 1.90803 1.38733 1.63820 1.53179 1.45920 1.10464 1.05410 1.73623 1.21362 0.82519 0.94593 0.99245 1.18356 0.94987 0.87734 0.93735 1.21686 0.96711 1.02903 0.96622 1.21683 0.96709 1.02898 0.96622 1.21269 0.92421 0.91867 1.51413 0.93907 1.25395 0.99245 0.97611 0.94631 1.69876 1.28173 1.04937 1.50578 0.85798 0.81342 0.77908 0.77988 1.20534 1.20701 1.20303 1.21232 0.96642 0.93776 0.98377 0.86667 0.89870 0.86222 0.73337 0.75656 0.94146 0.94134 0.94142 0.91637 0.96415 0.96400 0.91644 0.94151 0.92940 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 10.02 71.24 0.71 -0.68 16 2 C 0.42 8.41 7.24 27.88 0.20 8.61 16 3 O -0.53 -16.50 17.67 -3.17 -0.06 -16.55 16 4 C -0.30 -6.04 6.12 -20.18 -0.12 -6.16 16 5 C 0.14 1.39 11.28 84.44 0.95 2.34 16 6 N -0.51 -7.31 5.90 -183.16 -1.08 -8.39 16 7 H 0.44 3.63 8.13 -92.71 -0.75 2.87 16 8 C -0.07 -1.99 6.98 39.98 0.28 -1.71 16 9 C 0.58 20.27 7.79 86.49 0.67 20.94 16 10 O -0.58 -26.19 16.86 -4.29 -0.07 -26.26 16 11 N -0.70 -23.14 4.95 -466.90 -2.31 -25.45 16 12 C 0.15 6.09 4.50 86.38 0.39 6.48 16 13 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 14 C -0.12 -5.05 8.08 71.98 0.58 -4.47 16 15 C -0.12 -5.05 8.08 71.98 0.58 -4.47 16 16 C -0.53 -27.51 8.01 25.60 0.21 -27.31 16 17 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 18 C 0.03 1.60 5.15 84.65 0.44 2.04 16 19 N -0.90 -46.16 9.35 21.45 0.20 -45.95 16 20 Si 0.94 41.90 29.54 68.60 2.03 43.93 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 C -0.07 -2.15 10.37 22.63 0.23 -1.91 16 25 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.12 0.00 7.20 -2.39 -0.02 -0.02 16 28 H 0.25 -0.89 7.49 -2.91 -0.02 -0.92 16 29 H 0.41 10.56 5.24 -92.71 -0.49 10.07 16 30 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 33 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 37 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 38 H 0.26 12.95 8.31 -92.71 -0.77 12.18 16 39 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -75.65 326.58 3.65 -72.00 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -0.15 Total: 10.69 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 5.10 Total: -4.02 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -3.19 Total: -79.79 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -0.13 Total: -42.81 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -75.65 3.65 -72.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.623 kcal (2) G-P(sol) polarization free energy of solvation -75.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds