Wall clock time and date at job start Tue Mar 31 2020 00:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21339 * 119.99893 * 2 1 4 4 C 1.46428 * 120.00041 * 179.97438 * 2 1 3 5 5 C 1.38352 * 125.95047 * 359.68805 * 4 2 1 6 6 C 1.39306 * 107.40609 * 179.90314 * 5 4 2 7 7 C 1.38000 * 107.53063 * 0.36199 * 6 5 4 8 8 C 1.47418 * 125.85238 * 179.75547 * 7 6 5 9 9 O 1.21599 * 119.99908 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00116 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99830 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47021 * 299.99590 * 12 11 10 14 14 C 1.52998 * 109.47433 * 59.99750 * 12 11 10 15 15 C 1.50708 * 109.47428 * 179.97438 * 12 11 10 16 16 H 1.07996 * 119.99403 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00066 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00093 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99836 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47062 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46823 * 120.00189 * 19 17 15 22 22 H 1.48498 * 109.47030 * 239.99559 * 19 17 15 23 23 N 1.36609 * 108.30123 * 359.77465 * 7 6 5 24 24 H 0.97002 * 125.66734 * 179.97438 * 23 7 6 25 25 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 240.00341 * 1 2 3 27 27 H 1.09004 * 109.47113 * 120.00322 * 1 2 3 28 28 H 1.07997 * 126.29422 * 0.02562 * 5 4 2 29 29 H 1.07999 * 126.23343 * 180.17767 * 6 5 4 30 30 H 0.96995 * 119.99990 * 359.97438 * 10 8 7 31 31 H 1.09007 * 109.46961 * 299.99756 * 11 10 8 32 32 H 1.09001 * 109.47438 * 59.99546 * 11 10 8 33 33 H 1.09002 * 109.46978 * 60.00465 * 13 12 11 34 34 H 1.09003 * 109.47111 * 179.97438 * 13 12 11 35 35 H 1.08995 * 109.47396 * 300.00140 * 13 12 11 36 36 H 1.09001 * 109.47479 * 59.99988 * 14 12 11 37 37 H 1.08995 * 109.47366 * 180.02562 * 14 12 11 38 38 H 1.09009 * 109.46910 * 300.00122 * 14 12 11 39 39 H 0.96997 * 120.00499 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2392 -1.2681 0.0006 5 6 1.6754 -2.5315 0.0072 6 6 2.7194 -3.4538 0.0030 7 6 3.9022 -2.7427 0.0021 8 6 5.2578 -3.3219 0.0031 9 8 5.4031 -4.5292 0.0044 10 7 6.3361 -2.5134 0.0026 11 6 7.6832 -3.0890 0.0030 12 6 8.7190 -1.9630 0.0030 13 6 8.5337 -1.0997 -1.2466 14 6 8.5332 -1.0990 1.2519 15 6 10.1049 -2.5551 0.0041 16 1 10.2339 -3.6273 0.0051 17 6 11.2080 -1.7279 0.0047 18 7 11.0508 -0.4222 0.0040 19 14 12.9257 -2.4619 0.0068 20 1 12.8308 -3.9439 0.0067 21 1 13.6571 -2.0132 -1.2053 22 1 13.6548 -2.0120 1.2197 23 7 3.6015 -1.4101 0.0007 24 1 4.2458 -0.6850 0.0002 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 -0.5139 -0.8900 28 1 0.6200 -2.7606 0.0125 29 1 2.6211 -4.5293 0.0036 30 1 6.2202 -1.5504 0.0013 31 1 7.8154 -3.7037 0.8935 32 1 7.8155 -3.7049 -0.8865 33 1 7.5314 -0.6713 -1.2469 34 1 9.2714 -0.2971 -1.2464 35 1 8.6661 -1.7151 -2.1363 36 1 8.6652 -1.7139 2.1422 37 1 9.2708 -0.2965 1.2517 38 1 7.5308 -0.6706 1.2516 39 1 11.8268 0.1598 0.0048 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458040468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:21 Heat of formation + Delta-G solvation = -43.278432 kcal Electronic energy + Delta-G solvation = -21288.907964 eV Core-core repulsion = 18003.987018 eV Total energy + Delta-G solvation = -3284.920946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.58757 -39.34959 -38.58953 -36.44600 -33.52761 -31.95776 -30.94300 -30.87221 -28.84103 -25.83875 -25.81859 -25.14616 -23.42280 -21.42778 -20.47550 -19.79625 -18.90086 -18.36633 -16.55973 -15.84985 -15.65239 -15.40947 -15.09364 -14.96032 -14.74021 -14.09738 -13.82677 -13.81335 -13.05263 -12.94599 -12.86249 -12.78916 -12.51619 -12.45430 -12.28619 -11.48264 -11.28410 -10.94101 -10.71599 -10.47930 -10.32863 -10.24821 -9.90049 -9.73143 -9.39954 -9.30116 -8.86465 -8.72493 -8.46304 -8.35371 -6.07766 -4.18249 0.67875 1.89918 2.68589 2.83232 3.24154 3.32866 3.36396 3.47533 3.47945 3.91100 4.35766 4.70237 4.87661 4.99558 5.02322 5.07079 5.14110 5.19280 5.53361 5.82283 5.86288 6.07998 6.21731 6.33002 6.40509 6.60937 6.63555 6.71274 6.81214 6.84827 6.92438 7.01481 7.22882 7.26044 7.47017 7.63062 7.82458 7.92574 8.06110 8.29570 8.42551 8.82493 9.48126 10.93819 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.003693 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.442256 B = 7579.393678 C = 8328.473941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.417 3.583 3 O -0.469 6.469 4 C -0.062 4.062 5 C -0.132 4.132 6 C -0.135 4.135 7 C 0.006 3.994 8 C 0.572 3.428 9 O -0.530 6.530 10 N -0.712 5.712 11 C 0.131 3.869 12 C 0.055 3.945 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.504 5.504 24 H 0.424 0.576 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.393 0.607 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.003 0.997 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.087 0.913 38 H 0.003 0.997 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.398 0.213 -0.003 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.297 3.703 3 O -0.345 6.345 4 C -0.177 4.177 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.113 4.113 8 C 0.357 3.643 9 O -0.407 6.407 10 N -0.362 5.362 11 C 0.009 3.991 12 C 0.054 3.946 13 C -0.189 4.189 14 C -0.189 4.189 15 C -0.545 4.545 16 H 0.078 0.922 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.099 5.099 24 H 0.263 0.737 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.228 0.772 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.022 0.978 34 H 0.106 0.894 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.106 0.894 38 H 0.021 0.979 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.674 0.193 -0.002 18.675 hybrid contribution 1.212 0.396 0.000 1.275 sum -17.462 0.589 -0.002 17.472 Atomic orbital electron populations 1.22102 0.91911 1.05308 1.05033 1.21783 0.91916 0.85559 0.71086 1.90624 1.72140 1.34159 1.37587 1.21075 0.83185 0.96908 1.16576 1.21430 0.99554 0.89970 1.04884 1.21265 0.89512 1.00102 1.05121 1.21102 0.95905 0.82627 1.11711 1.17278 0.82451 0.86738 0.77866 1.90806 1.85629 1.13482 1.50760 1.46296 1.07295 1.09679 1.72978 1.21835 0.78472 0.97779 1.01002 1.18383 0.92579 0.90751 0.92840 1.21845 0.97862 1.01521 0.97665 1.21846 0.97861 1.01523 0.97663 1.20999 0.89437 0.93089 1.51011 0.92237 1.24889 0.99130 0.94827 0.94679 1.69804 1.29774 1.02351 1.50458 0.86491 0.84215 0.79485 0.77565 1.19700 1.21029 1.21025 1.42029 1.07137 1.07481 1.53288 0.73691 0.89425 0.88436 0.88439 0.82783 0.82678 0.77238 0.92174 0.92172 0.97847 0.89425 0.95246 0.95249 0.89421 0.97851 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.01 9.70 36.01 0.35 -0.66 16 2 C 0.42 4.19 7.23 -31.01 -0.22 3.97 16 3 O -0.47 -6.43 17.83 5.51 0.10 -6.34 16 4 C -0.06 -0.68 7.02 -82.23 -0.58 -1.25 16 5 C -0.13 -1.26 10.33 -39.14 -0.40 -1.66 16 6 C -0.13 -1.64 10.60 -39.27 -0.42 -2.05 16 7 C 0.01 0.09 7.04 -82.09 -0.58 -0.49 16 8 C 0.57 9.96 7.81 -12.52 -0.10 9.87 16 9 O -0.53 -10.86 16.87 5.28 0.09 -10.77 16 10 N -0.71 -12.52 4.96 -61.39 -0.30 -12.83 16 11 C 0.13 2.72 4.50 -4.05 -0.02 2.70 16 12 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 13 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 14 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 15 C -0.51 -13.09 8.01 -34.44 -0.28 -13.37 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 18 N -0.89 -23.39 9.35 55.43 0.52 -22.88 16 19 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 N -0.50 -6.28 5.99 -5.97 -0.04 -6.32 16 24 H 0.42 5.00 8.15 -40.82 -0.33 4.66 16 25 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 26 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.15 0.88 7.98 -52.49 -0.42 0.47 16 29 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.39 6.27 5.26 -40.82 -0.21 6.05 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 34 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 38 H 0.00 0.05 6.86 -51.92 -0.36 -0.31 16 39 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -30.24 328.24 -6.75 -36.99 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.23 Total: 7.05 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.81 Total: -5.39 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.18 Total: -42.03 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.19 Total: -17.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.24 -6.75 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458040468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.287 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds