Wall clock time and date at job start Tue Mar 31 2020 00:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47225 * 2 1 4 4 C 1.42894 * 114.00598 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47637 * 180.02562 * 4 3 2 6 6 C 1.38301 * 119.96551 * 270.27125 * 5 4 3 7 7 C 1.38256 * 120.14378 * 180.27321 * 6 5 4 8 8 C 1.38131 * 120.06785 * 359.45239 * 7 6 5 9 9 C 1.38846 * 119.92822 * 0.27429 * 8 7 6 10 10 N 1.39947 * 120.06952 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00457 * 33.26943 * 10 9 8 12 12 O 1.21592 * 119.99218 * 5.32201 * 11 10 9 13 13 N 1.34768 * 120.00530 * 185.31390 * 11 10 9 14 14 C 1.46501 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47009 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00414 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99703 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00198 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00064 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47020 * 59.99882 * 19 17 15 21 21 H 1.48494 * 109.47238 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46800 * 300.00113 * 19 17 15 23 23 C 1.38090 * 119.96851 * 89.99807 * 5 4 3 24 24 H 1.09004 * 109.47400 * 59.99879 * 1 2 3 25 25 H 1.09000 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47156 * 299.99979 * 1 2 3 27 27 H 1.09009 * 109.47069 * 240.00501 * 2 1 3 28 28 H 1.08995 * 109.47577 * 120.00127 * 2 1 3 29 29 H 1.09003 * 109.47190 * 59.99436 * 4 3 2 30 30 H 1.09008 * 109.46815 * 300.00173 * 4 3 2 31 31 H 1.08006 * 119.93218 * 0.02562 * 6 5 4 32 32 H 1.07995 * 119.96718 * 179.72856 * 7 6 5 33 33 H 1.07997 * 120.03948 * 180.25389 * 8 7 6 34 34 H 0.96998 * 120.00184 * 213.27066 * 10 9 8 35 35 H 0.97005 * 120.00099 * 0.02562 * 13 11 10 36 36 H 1.09003 * 109.47057 * 300.00459 * 14 13 11 37 37 H 1.08996 * 109.47125 * 60.00329 * 14 13 11 38 38 H 0.97003 * 120.00294 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.03223 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9162 0.0001 6 6 3.9915 3.5858 -1.1977 7 6 4.3535 4.9201 -1.2014 8 6 4.5334 5.5917 -0.0078 9 6 4.3559 4.9238 1.1964 10 7 4.5379 5.6013 2.4074 11 6 4.2246 6.9087 2.5020 12 8 3.6943 7.4759 1.5663 13 7 4.4990 7.5873 3.6336 14 6 4.1580 9.0083 3.7366 15 6 4.5667 9.5261 5.0916 16 1 5.0333 8.8630 5.8048 17 6 4.3438 10.8463 5.4210 18 7 3.7742 11.6535 4.5530 19 14 4.8496 11.4880 7.1008 20 1 6.3144 11.3169 7.2755 21 1 4.5041 12.9284 7.2051 22 1 4.1332 10.7287 8.1570 23 6 3.9978 3.5820 1.1967 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 3.8467 3.0642 -2.1323 32 1 4.4914 5.4391 -2.1384 33 1 4.8121 6.6351 -0.0113 34 1 4.8895 5.1298 3.1788 35 1 4.9224 7.1348 4.3800 36 1 4.6841 9.5654 2.9613 37 1 3.0830 9.1342 3.6082 38 1 3.6177 12.5824 4.7846 39 1 3.8593 3.0596 2.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488252850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:40 Heat of formation + Delta-G solvation = -56.604910 kcal Electronic energy + Delta-G solvation = -20396.456051 eV Core-core repulsion = 17110.957225 eV Total energy + Delta-G solvation = -3285.498826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23498 -38.83193 -37.72299 -34.68571 -34.09299 -32.53589 -32.21357 -30.72608 -29.51921 -27.00414 -26.00413 -23.19777 -23.03214 -22.23976 -21.48570 -19.96565 -18.21195 -17.34692 -16.82392 -16.37578 -16.04402 -15.96379 -15.16781 -14.97363 -14.60114 -14.37871 -14.05789 -13.55316 -13.32073 -13.16742 -13.01016 -12.54571 -12.48844 -12.00005 -11.92291 -11.68684 -11.60241 -11.39950 -11.00995 -10.97520 -10.90297 -10.32458 -10.08305 -9.84809 -9.48096 -9.42462 -8.76855 -8.74593 -8.09120 -7.69933 -6.17736 -4.24965 1.37934 1.47663 3.13466 3.24694 3.29890 3.31739 3.44724 3.76525 4.15146 4.30645 4.69769 4.73868 4.84045 4.89300 4.97553 5.07732 5.09117 5.18328 5.18878 5.28858 5.42295 5.50221 5.63020 5.67060 5.82399 5.85671 6.02816 6.46046 6.48629 6.66028 6.73544 6.97569 7.04475 7.24238 7.39490 7.48824 7.51307 7.81772 7.97827 8.67580 8.82695 9.18831 9.42157 10.92374 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029336 B = 0.002805 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.226333 B = 9981.126851 C =10440.386944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.108 3.892 5 C -0.078 4.078 6 C -0.126 4.126 7 C -0.102 4.102 8 C -0.114 4.114 9 C 0.180 3.820 10 N -0.696 5.696 11 C 0.690 3.310 12 O -0.581 6.581 13 N -0.722 5.722 14 C 0.266 3.734 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.135 4.135 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.140 0.860 34 H 0.403 0.597 35 H 0.388 0.612 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.267 0.733 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -23.035 -8.278 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.301 6.301 4 C 0.032 3.968 5 C -0.078 4.078 6 C -0.145 4.145 7 C -0.121 4.121 8 C -0.135 4.135 9 C 0.084 3.916 10 N -0.344 5.344 11 C 0.390 3.610 12 O -0.459 6.459 13 N -0.374 5.374 14 C 0.145 3.855 15 C -0.583 4.583 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.156 4.156 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.237 0.763 35 H 0.221 0.779 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.045 -22.003 -9.070 23.799 hybrid contribution 0.719 -0.212 1.698 1.856 sum 0.764 -22.215 -7.373 23.419 Atomic orbital electron populations 1.21746 0.93729 1.02089 1.03386 1.22463 0.95712 0.83996 0.99894 1.88028 1.20606 1.26102 1.95360 1.21255 0.81710 0.93228 1.00591 1.19196 1.01083 0.94516 0.93037 1.20892 1.01756 0.94745 0.97081 1.21004 0.99202 0.94084 0.97816 1.21344 1.00018 1.01333 0.90801 1.17489 0.97408 0.91032 0.85657 1.42840 1.68940 1.10268 1.12353 1.16161 0.79800 0.80376 0.84641 1.90900 1.48414 1.67932 1.38635 1.45782 1.63544 1.13835 1.14193 1.19051 0.96596 0.72701 0.97135 1.21166 1.41966 0.95706 0.99450 0.91935 1.24945 0.94794 0.96521 0.97723 1.69966 1.41442 1.05853 1.34924 0.86451 0.78996 0.77894 0.83419 1.20069 1.21043 1.20067 1.20664 1.03138 0.93730 0.98060 0.91785 0.91204 0.91732 0.93508 0.93480 0.92518 0.92625 0.86317 0.85730 0.84257 0.76267 0.77915 0.95480 0.95500 0.92330 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.46 6.66 37.16 0.25 0.70 16 3 O -0.38 -4.42 10.33 -35.23 -0.36 -4.79 16 4 C 0.11 1.07 6.06 36.00 0.22 1.29 16 5 C -0.08 -0.95 5.51 -104.65 -0.58 -1.53 16 6 C -0.13 -1.53 9.70 -39.55 -0.38 -1.91 16 7 C -0.10 -1.38 10.04 -39.61 -0.40 -1.77 16 8 C -0.11 -1.86 8.66 -39.40 -0.34 -2.20 16 9 C 0.18 2.82 6.28 -83.69 -0.53 2.29 16 10 N -0.70 -10.99 5.35 -14.23 -0.08 -11.07 16 11 C 0.69 14.29 8.30 -86.93 -0.72 13.57 16 12 O -0.58 -14.36 14.03 5.28 0.07 -14.29 16 13 N -0.72 -15.26 5.55 -66.41 -0.37 -15.63 16 14 C 0.27 7.06 5.43 -5.19 -0.03 7.03 16 15 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 16 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.88 -26.03 13.29 55.43 0.74 -25.30 16 19 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.13 -1.78 9.61 -39.40 -0.38 -2.16 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.32 8.14 -51.92 -0.42 -0.11 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.06 0.46 8.08 -51.92 -0.42 0.04 16 31 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.14 2.58 6.41 -52.49 -0.34 2.24 16 34 H 0.40 4.84 8.83 -40.82 -0.36 4.48 16 35 H 0.39 6.91 8.34 -40.82 -0.34 6.57 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -33.29 337.49 -8.49 -41.78 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.64 Total: 7.24 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.92 Total: 1.21 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.29 Total: -52.00 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.29 Total: -19.07 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.29 -8.49 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488252850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.824 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds