Wall clock time and date at job start Tue Mar 31 2020 00:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47225 * 2 1 4 4 C 1.42894 * 114.00598 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47637 * 180.02562 * 4 3 2 6 6 C 1.38301 * 119.96551 * 270.27125 * 5 4 3 7 7 C 1.38256 * 120.14378 * 180.27321 * 6 5 4 8 8 C 1.38131 * 120.06785 * 359.45239 * 7 6 5 9 9 C 1.38846 * 119.92822 * 0.27429 * 8 7 6 10 10 N 1.39947 * 120.06952 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00457 * 33.26943 * 10 9 8 12 12 O 1.21592 * 119.99218 * 5.32201 * 11 10 9 13 13 N 1.34768 * 120.00530 * 185.31390 * 11 10 9 14 14 C 1.46501 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47009 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00414 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99703 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00198 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00064 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47020 * 59.99882 * 19 17 15 21 21 H 1.48494 * 109.47238 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46800 * 300.00113 * 19 17 15 23 23 C 1.38090 * 119.96851 * 89.99807 * 5 4 3 24 24 H 1.09004 * 109.47400 * 59.99879 * 1 2 3 25 25 H 1.09000 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47156 * 299.99979 * 1 2 3 27 27 H 1.09009 * 109.47069 * 240.00501 * 2 1 3 28 28 H 1.08995 * 109.47577 * 120.00127 * 2 1 3 29 29 H 1.09003 * 109.47190 * 59.99436 * 4 3 2 30 30 H 1.09008 * 109.46815 * 300.00173 * 4 3 2 31 31 H 1.08006 * 119.93218 * 0.02562 * 6 5 4 32 32 H 1.07995 * 119.96718 * 179.72856 * 7 6 5 33 33 H 1.07997 * 120.03948 * 180.25389 * 8 7 6 34 34 H 0.96998 * 120.00184 * 213.27066 * 10 9 8 35 35 H 0.97005 * 120.00099 * 0.02562 * 13 11 10 36 36 H 1.09003 * 109.47057 * 300.00459 * 14 13 11 37 37 H 1.08996 * 109.47125 * 60.00329 * 14 13 11 38 38 H 0.97003 * 120.00294 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.03223 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9162 0.0001 6 6 3.9915 3.5858 -1.1977 7 6 4.3535 4.9201 -1.2014 8 6 4.5334 5.5917 -0.0078 9 6 4.3559 4.9238 1.1964 10 7 4.5379 5.6013 2.4074 11 6 4.2246 6.9087 2.5020 12 8 3.6943 7.4759 1.5663 13 7 4.4990 7.5873 3.6336 14 6 4.1580 9.0083 3.7366 15 6 4.5667 9.5261 5.0916 16 1 5.0333 8.8630 5.8048 17 6 4.3438 10.8463 5.4210 18 7 3.7742 11.6535 4.5530 19 14 4.8496 11.4880 7.1008 20 1 6.3144 11.3169 7.2755 21 1 4.5041 12.9284 7.2051 22 1 4.1332 10.7287 8.1570 23 6 3.9978 3.5820 1.1967 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 3.8467 3.0642 -2.1323 32 1 4.4914 5.4391 -2.1384 33 1 4.8121 6.6351 -0.0113 34 1 4.8895 5.1298 3.1788 35 1 4.9224 7.1348 4.3800 36 1 4.6841 9.5654 2.9613 37 1 3.0830 9.1342 3.6082 38 1 3.6177 12.5824 4.7846 39 1 3.8593 3.0596 2.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488252850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:38 Heat of formation + Delta-G solvation = -80.059297 kcal Electronic energy + Delta-G solvation = -20397.473109 eV Core-core repulsion = 17110.957225 eV Total energy + Delta-G solvation = -3286.515884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.64217 -40.01469 -38.63647 -36.34251 -35.77256 -34.39603 -33.21705 -31.53312 -30.82412 -28.92985 -26.89108 -25.05208 -23.61966 -23.36892 -22.97530 -21.47147 -19.85798 -18.63789 -17.96823 -17.53443 -17.24953 -17.07575 -16.70632 -16.51746 -16.00311 -15.63200 -15.38954 -14.94408 -14.61456 -14.27953 -14.05655 -13.95746 -13.77012 -13.53403 -13.15456 -12.92793 -12.69097 -12.61445 -12.34533 -12.23359 -12.13377 -11.88379 -11.51918 -11.46146 -11.14991 -10.80615 -10.51719 -9.95370 -9.82328 -9.01842 -8.29347 -6.46226 0.30009 0.38286 1.43100 1.47834 1.55514 1.69692 2.07066 2.38541 2.64531 3.05652 3.18111 3.38010 3.85117 3.94156 4.17327 4.22605 4.32835 4.36336 4.42255 4.49037 4.55290 4.59904 4.75423 4.89338 4.97367 5.06244 5.06727 5.23500 5.29622 5.33865 5.39931 5.42817 5.57637 5.61875 5.63708 5.81399 6.08108 6.16611 6.32466 6.64347 7.14508 7.24187 7.56890 8.82735 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029336 B = 0.002805 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.226333 B = 9981.126851 C =10440.386944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.412 6.412 4 C 0.108 3.892 5 C -0.079 4.079 6 C -0.118 4.118 7 C -0.106 4.106 8 C -0.143 4.143 9 C 0.152 3.848 10 N -0.674 5.674 11 C 0.691 3.309 12 O -0.627 6.627 13 N -0.715 5.715 14 C 0.285 3.715 15 C -0.557 4.557 16 H 0.085 0.915 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.987 3.013 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.262 1.262 23 C -0.128 4.128 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.422 0.578 35 H 0.407 0.593 36 H -0.011 1.011 37 H -0.013 1.013 38 H 0.269 0.731 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 -26.038 -7.290 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.333 6.333 4 C 0.032 3.968 5 C -0.080 4.080 6 C -0.137 4.137 7 C -0.124 4.124 8 C -0.164 4.164 9 C 0.057 3.943 10 N -0.324 5.324 11 C 0.391 3.609 12 O -0.507 6.507 13 N -0.368 5.368 14 C 0.162 3.838 15 C -0.594 4.594 16 H 0.103 0.897 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.810 3.190 20 H -0.186 1.186 21 H -0.211 1.211 22 H -0.186 1.186 23 C -0.149 4.149 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.123 0.877 34 H 0.261 0.739 35 H 0.243 0.757 36 H 0.007 0.993 37 H 0.005 0.995 38 H 0.078 0.922 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.728 -25.105 -8.068 26.380 hybrid contribution 0.478 0.586 1.242 1.455 sum 1.206 -24.519 -6.825 25.480 Atomic orbital electron populations 1.21790 0.93690 1.03262 1.02322 1.22665 0.95818 0.82756 1.01325 1.87978 1.21373 1.28250 1.95666 1.21349 0.81343 0.91388 1.02693 1.19625 0.99709 0.96082 0.92569 1.21266 0.99886 0.94025 0.98543 1.21223 0.98799 0.94970 0.97457 1.21267 1.02262 1.00212 0.92682 1.17717 0.99473 0.92160 0.84944 1.42443 1.68074 1.08318 1.13528 1.16268 0.79274 0.81739 0.83636 1.90872 1.50314 1.69466 1.40083 1.45328 1.64052 1.12131 1.15317 1.18471 0.93611 0.75271 0.96456 1.21559 1.41877 0.96420 0.99591 0.89680 1.26074 0.94426 0.96786 1.02299 1.70136 1.42830 1.06335 1.37584 0.85178 0.79203 0.76943 0.77706 1.18616 1.21113 1.18642 1.20903 1.01871 0.92445 0.99697 0.92641 0.88949 0.92991 0.91831 0.92186 0.90211 0.90795 0.83348 0.84037 0.87685 0.73920 0.75674 0.99307 0.99458 0.92187 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.41 -8.42 10.33 -148.98 -1.54 -9.96 16 4 C 0.11 1.75 6.06 71.24 0.43 2.18 16 5 C -0.08 -1.74 5.51 -19.89 -0.11 -1.85 16 6 C -0.12 -2.62 9.70 22.29 0.22 -2.40 16 7 C -0.11 -2.81 10.04 22.25 0.22 -2.59 16 8 C -0.14 -4.85 8.66 22.39 0.19 -4.66 16 9 C 0.15 4.75 6.28 38.15 0.24 4.99 16 10 N -0.67 -21.37 5.35 -317.18 -1.70 -23.07 16 11 C 0.69 29.71 8.30 179.06 1.49 31.20 16 12 O -0.63 -32.96 14.03 -4.01 -0.06 -33.01 16 13 N -0.71 -31.06 5.55 -482.30 -2.68 -33.74 16 14 C 0.28 15.87 5.43 85.63 0.46 16.34 16 15 C -0.56 -30.34 9.28 25.60 0.24 -30.11 16 16 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 17 C 0.00 0.22 5.46 84.65 0.46 0.68 16 18 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 19 Si 0.99 42.29 29.54 68.60 2.03 44.32 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 23 C -0.13 -3.16 9.61 22.39 0.22 -2.94 16 24 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 30 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 31 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 33 H 0.11 4.24 6.41 -2.91 -0.02 4.23 16 34 H 0.42 9.67 8.83 -92.71 -0.82 8.85 16 35 H 0.41 14.33 8.34 -92.70 -0.77 13.55 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -75.89 337.49 1.09 -74.79 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.53 Total: 26.06 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.28 Total: 10.75 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -4.09 Total: -112.95 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.59 Total: -42.97 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -75.89 1.09 -74.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488252850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.267 kcal (2) G-P(sol) polarization free energy of solvation -75.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds