Wall clock time and date at job start Tue Mar 31 2020 00:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.47047 * 2 1 4 4 C 1.35989 * 116.99939 * 179.97438 * 3 2 1 5 5 C 1.38544 * 120.08000 * 0.02562 * 4 3 2 6 6 C 1.38250 * 120.01185 * 179.97438 * 5 4 3 7 7 C 1.50701 * 119.91476 * 179.97438 * 6 5 4 8 8 C 1.38268 * 120.17385 * 359.97438 * 6 5 4 9 9 C 1.38203 * 120.16681 * 0.02562 * 8 6 5 10 10 C 1.38714 * 119.98248 * 0.02562 * 9 8 6 11 11 N 1.40162 * 120.08469 * 180.27599 * 10 9 8 12 12 C 1.34777 * 120.00543 * 325.33646 * 11 10 9 13 13 O 1.21599 * 119.99666 * 4.46551 * 12 11 10 14 14 N 1.34771 * 120.00254 * 184.47149 * 12 11 10 15 15 C 1.46503 * 119.99920 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.46969 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00200 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99893 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00165 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00214 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47214 * 60.00253 * 20 18 16 22 22 H 1.48501 * 109.47622 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47158 * 300.00444 * 20 18 16 24 24 H 1.09001 * 109.46799 * 60.00579 * 1 2 3 25 25 H 1.08998 * 109.46815 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47258 * 300.00273 * 1 2 3 27 27 H 1.09000 * 109.47679 * 239.99530 * 2 1 3 28 28 H 1.09006 * 109.47216 * 119.99611 * 2 1 3 29 29 H 1.07998 * 119.99667 * 359.95212 * 5 4 3 30 30 H 1.09000 * 109.46791 * 89.99349 * 7 6 5 31 31 H 1.08994 * 109.47364 * 209.99458 * 7 6 5 32 32 H 1.08996 * 109.46849 * 330.00273 * 7 6 5 33 33 H 1.08006 * 119.91582 * 180.02562 * 8 6 5 34 34 H 1.07997 * 120.00956 * 180.02562 * 9 8 6 35 35 H 0.97001 * 119.99736 * 145.34133 * 11 10 9 36 36 H 0.96995 * 120.00152 * 359.97438 * 14 12 11 37 37 H 1.08998 * 109.46817 * 299.98992 * 15 14 12 38 38 H 1.08989 * 109.47442 * 59.99386 * 15 14 12 39 39 H 0.96998 * 120.00099 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4280 0.0005 6 6 5.5703 0.6108 0.0005 7 6 6.4880 -0.5846 0.0011 8 6 6.1012 1.8875 0.0000 9 6 5.2645 2.9875 0.0001 10 6 3.8885 2.8119 0.0011 11 7 3.0380 3.9259 -0.0047 12 6 3.3922 5.0477 0.6531 13 8 4.4839 5.1226 1.1833 14 7 2.5362 6.0863 0.7235 15 6 2.9214 7.3058 1.4381 16 6 1.7961 8.3057 1.3682 17 1 0.8852 8.0578 0.8435 18 6 1.9293 9.5371 1.9740 19 7 3.0387 9.8392 2.6125 20 14 0.5348 10.7768 1.8867 21 1 -0.6813 10.1987 2.5129 22 1 0.9251 12.0129 2.6112 23 1 0.2520 11.1045 0.4661 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.7885 -0.5705 0.0009 30 1 6.7092 -0.8733 -1.0264 31 1 7.4152 -0.3307 0.5148 32 1 6.0032 -1.4145 0.5152 33 1 7.1724 2.0255 -0.0004 34 1 5.6819 3.9836 -0.0008 35 1 2.1945 3.8896 -0.4822 36 1 1.6654 6.0267 0.3004 37 1 3.1300 7.0655 2.4806 38 1 3.8134 7.7304 0.9777 39 1 3.1326 10.7056 3.0384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488350447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:45 Heat of formation + Delta-G solvation = -51.885569 kcal Electronic energy + Delta-G solvation = -21018.128083 eV Core-core repulsion = 17732.833903 eV Total energy + Delta-G solvation = -3285.294180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57365 -39.11393 -37.56581 -34.86726 -34.05012 -32.44090 -31.94998 -31.05909 -29.63814 -27.46818 -25.97834 -24.03288 -22.83033 -21.84942 -21.30063 -20.10112 -18.24886 -17.89857 -17.03722 -16.23993 -16.05325 -15.60308 -14.91400 -14.67893 -14.34923 -14.11013 -13.84015 -13.67019 -13.65228 -13.15226 -13.02831 -12.80439 -12.38106 -12.08979 -11.96248 -11.84118 -11.68111 -11.42285 -11.12875 -10.96978 -10.88149 -10.75179 -10.28869 -9.88839 -9.38901 -9.33824 -8.72723 -8.44492 -7.95608 -7.44495 -6.14751 -4.21549 1.42126 1.52871 3.06692 3.26860 3.27031 3.32028 3.35806 3.67431 4.05762 4.33522 4.68358 4.71742 4.89042 4.90952 4.97945 5.02648 5.10696 5.21315 5.33301 5.36919 5.50165 5.57314 5.60946 5.67580 5.83341 5.85221 6.02864 6.26192 6.37543 6.66375 6.81095 7.02455 7.09879 7.44761 7.49505 7.55013 7.55917 7.87818 8.02486 8.73401 8.88491 9.26189 9.45987 10.95428 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.003666 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.448230 B = 7635.776340 C = 8782.319675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.316 6.316 4 C 0.097 3.903 5 C -0.192 4.192 6 C -0.078 4.078 7 C -0.109 4.109 8 C -0.136 4.136 9 C -0.084 4.084 10 C 0.149 3.851 11 N -0.687 5.687 12 C 0.692 3.308 13 O -0.586 6.586 14 N -0.722 5.722 15 C 0.266 3.734 16 C -0.543 4.543 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.405 0.595 36 H 0.388 0.612 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -21.969 -7.614 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.230 6.230 4 C 0.049 3.951 5 C -0.212 4.212 6 C -0.079 4.079 7 C -0.166 4.166 8 C -0.155 4.155 9 C -0.104 4.104 10 C 0.052 3.948 11 N -0.336 5.336 12 C 0.392 3.608 13 O -0.465 6.465 14 N -0.374 5.374 15 C 0.146 3.854 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.732 3.268 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.240 0.760 36 H 0.221 0.779 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.237 -21.461 -6.957 22.562 hybrid contribution -1.527 0.448 -0.350 1.630 sum -1.290 -21.013 -7.307 22.285 Atomic orbital electron populations 1.21772 0.92843 1.02656 1.03680 1.22721 0.95723 0.82205 1.01129 1.86045 1.18732 1.28990 1.89262 1.18700 0.82478 0.92633 1.01253 1.20789 0.93431 0.97147 1.09801 1.19607 0.93194 0.95084 1.00035 1.20730 0.98502 0.95345 1.02002 1.20859 0.99742 0.91295 1.03601 1.21320 0.90692 1.00866 0.97543 1.16884 0.90006 0.83260 1.04626 1.42590 1.23437 1.12083 1.55448 1.16144 0.85073 0.80015 0.79550 1.90856 1.21801 1.81703 1.52120 1.45749 1.17736 1.15944 1.57959 1.19033 0.96237 0.78377 0.91790 1.21182 1.01398 0.99549 1.36055 0.91939 1.24938 0.96155 0.98099 0.94784 1.69967 1.25565 1.22639 1.34091 0.86459 0.81835 0.80222 0.78284 1.20079 1.21069 1.20074 0.91511 0.90564 0.91403 0.92284 0.92227 0.85633 0.91413 0.91499 0.91957 0.85802 0.83096 0.76039 0.77925 0.95541 0.95516 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.52 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.11 9.69 -19.71 -0.19 -4.30 16 4 C 0.10 1.38 6.70 -39.08 -0.26 1.12 16 5 C -0.19 -2.34 8.69 -39.46 -0.34 -2.68 16 6 C -0.08 -0.94 5.88 -104.61 -0.62 -1.55 16 7 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 8 C -0.14 -1.85 9.69 -39.58 -0.38 -2.24 16 9 C -0.08 -1.39 8.71 -39.42 -0.34 -1.73 16 10 C 0.15 2.48 6.32 -83.48 -0.53 1.95 16 11 N -0.69 -11.81 5.20 -14.10 -0.07 -11.88 16 12 C 0.69 14.84 8.41 -86.92 -0.73 14.11 16 13 O -0.59 -14.61 13.76 5.28 0.07 -14.54 16 14 N -0.72 -15.80 5.55 -66.41 -0.37 -16.17 16 15 C 0.27 7.18 5.43 -5.19 -0.03 7.16 16 16 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 28 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.15 2.83 6.18 -52.49 -0.32 2.50 16 35 H 0.40 5.85 8.58 -40.82 -0.35 5.50 16 36 H 0.39 7.29 8.34 -40.82 -0.34 6.95 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.79 8.14 -51.94 -0.42 0.37 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -32.87 332.37 -8.02 -40.89 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.47 Total: 8.53 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.71 Total: 2.02 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.29 Total: -53.56 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.12 Total: -18.84 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.87 -8.02 -40.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488350447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.996 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds