Wall clock time and date at job start Tue Mar 31 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.47047 * 2 1 4 4 C 1.35989 * 116.99939 * 179.97438 * 3 2 1 5 5 C 1.38544 * 120.08000 * 0.02562 * 4 3 2 6 6 C 1.38250 * 120.01185 * 179.97438 * 5 4 3 7 7 C 1.50701 * 119.91476 * 179.97438 * 6 5 4 8 8 C 1.38268 * 120.17385 * 359.97438 * 6 5 4 9 9 C 1.38203 * 120.16681 * 0.02562 * 8 6 5 10 10 C 1.38714 * 119.98248 * 0.02562 * 9 8 6 11 11 N 1.40162 * 120.08469 * 180.27599 * 10 9 8 12 12 C 1.34777 * 120.00543 * 325.33646 * 11 10 9 13 13 O 1.21599 * 119.99666 * 4.46551 * 12 11 10 14 14 N 1.34771 * 120.00254 * 184.47149 * 12 11 10 15 15 C 1.46503 * 119.99920 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.46969 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00200 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99893 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00165 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00214 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47214 * 60.00253 * 20 18 16 22 22 H 1.48501 * 109.47622 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47158 * 300.00444 * 20 18 16 24 24 H 1.09001 * 109.46799 * 60.00579 * 1 2 3 25 25 H 1.08998 * 109.46815 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47258 * 300.00273 * 1 2 3 27 27 H 1.09000 * 109.47679 * 239.99530 * 2 1 3 28 28 H 1.09006 * 109.47216 * 119.99611 * 2 1 3 29 29 H 1.07998 * 119.99667 * 359.95212 * 5 4 3 30 30 H 1.09000 * 109.46791 * 89.99349 * 7 6 5 31 31 H 1.08994 * 109.47364 * 209.99458 * 7 6 5 32 32 H 1.08996 * 109.46849 * 330.00273 * 7 6 5 33 33 H 1.08006 * 119.91582 * 180.02562 * 8 6 5 34 34 H 1.07997 * 120.00956 * 180.02562 * 9 8 6 35 35 H 0.97001 * 119.99736 * 145.34133 * 11 10 9 36 36 H 0.96995 * 120.00152 * 359.97438 * 14 12 11 37 37 H 1.08998 * 109.46817 * 299.98992 * 15 14 12 38 38 H 1.08989 * 109.47442 * 59.99386 * 15 14 12 39 39 H 0.96998 * 120.00099 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4280 0.0005 6 6 5.5703 0.6108 0.0005 7 6 6.4880 -0.5846 0.0011 8 6 6.1012 1.8875 0.0000 9 6 5.2645 2.9875 0.0001 10 6 3.8885 2.8119 0.0011 11 7 3.0380 3.9259 -0.0047 12 6 3.3922 5.0477 0.6531 13 8 4.4839 5.1226 1.1833 14 7 2.5362 6.0863 0.7235 15 6 2.9214 7.3058 1.4381 16 6 1.7961 8.3057 1.3682 17 1 0.8852 8.0578 0.8435 18 6 1.9293 9.5371 1.9740 19 7 3.0387 9.8392 2.6125 20 14 0.5348 10.7768 1.8867 21 1 -0.6813 10.1987 2.5129 22 1 0.9251 12.0129 2.6112 23 1 0.2520 11.1045 0.4661 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.7885 -0.5705 0.0009 30 1 6.7092 -0.8733 -1.0264 31 1 7.4152 -0.3307 0.5148 32 1 6.0032 -1.4145 0.5152 33 1 7.1724 2.0255 -0.0004 34 1 5.6819 3.9836 -0.0008 35 1 2.1945 3.8896 -0.4822 36 1 1.6654 6.0267 0.3004 37 1 3.1300 7.0655 2.4806 38 1 3.8134 7.7304 0.9777 39 1 3.1326 10.7056 3.0384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488350447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:44 Heat of formation + Delta-G solvation = -74.653121 kcal Electronic energy + Delta-G solvation = -21019.115358 eV Core-core repulsion = 17732.833903 eV Total energy + Delta-G solvation = -3286.281455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83480 -40.54723 -38.60606 -36.45433 -35.84879 -34.42435 -32.79427 -32.18105 -30.61974 -29.34547 -27.19720 -24.89881 -24.76075 -22.86130 -22.56954 -21.68877 -19.88808 -19.15349 -18.21310 -17.93868 -17.13676 -16.82744 -16.77068 -16.29436 -15.91583 -15.25924 -15.07102 -14.85924 -14.69028 -14.47433 -14.09867 -14.03549 -13.82321 -13.38297 -13.12253 -12.93539 -12.79033 -12.71731 -12.65368 -12.36543 -12.22377 -12.03220 -11.56483 -11.51307 -11.31423 -10.97613 -10.80227 -9.93327 -9.51830 -8.68436 -8.28971 -6.45822 0.29619 0.44092 1.42941 1.47815 1.55498 1.71402 2.10276 2.21784 2.39062 2.81096 3.05833 3.38754 3.83205 3.94582 4.10136 4.18996 4.20023 4.34057 4.40990 4.52138 4.71786 4.80073 4.91415 4.95756 4.97480 5.00846 5.10824 5.19455 5.24515 5.28264 5.34113 5.44860 5.58810 5.62722 5.67552 5.81915 5.89544 6.16146 6.46845 6.64534 7.15123 7.24483 7.58846 8.83153 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.003666 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.448230 B = 7635.776340 C = 8782.319675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.332 6.332 4 C 0.102 3.898 5 C -0.189 4.189 6 C -0.066 4.066 7 C -0.108 4.108 8 C -0.146 4.146 9 C -0.105 4.105 10 C 0.107 3.893 11 N -0.668 5.668 12 C 0.691 3.309 13 O -0.627 6.627 14 N -0.717 5.717 15 C 0.286 3.714 16 C -0.558 4.558 17 H 0.083 0.917 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.987 3.013 21 H -0.262 1.262 22 H -0.284 1.284 23 H -0.262 1.262 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.161 0.839 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.418 0.582 36 H 0.405 0.595 37 H -0.013 1.013 38 H -0.010 1.010 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -24.536 -8.586 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.247 6.247 4 C 0.055 3.945 5 C -0.208 4.208 6 C -0.067 4.067 7 C -0.164 4.164 8 C -0.164 4.164 9 C -0.126 4.126 10 C 0.011 3.989 11 N -0.317 5.317 12 C 0.392 3.608 13 O -0.508 6.508 14 N -0.370 5.370 15 C 0.163 3.837 16 C -0.596 4.596 17 H 0.101 0.899 18 C -0.195 4.195 19 N -0.568 5.568 20 Si 0.810 3.190 21 H -0.187 1.187 22 H -0.210 1.210 23 H -0.186 1.186 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.178 0.822 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.255 0.745 36 H 0.241 0.759 37 H 0.005 0.995 38 H 0.008 0.992 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.498 -24.107 -7.977 25.437 hybrid contribution -0.936 1.045 -0.071 1.405 sum -2.434 -23.062 -8.047 24.546 Atomic orbital electron populations 1.21809 0.91741 1.04181 1.02970 1.23089 0.96650 0.80521 1.02519 1.86040 1.17912 1.31733 1.88972 1.18730 0.83545 0.92028 1.00241 1.21202 0.93278 0.97989 1.08325 1.20073 0.93952 0.95539 0.97143 1.20827 0.98056 0.94030 1.03531 1.21076 1.00309 0.91367 1.03682 1.21184 0.91533 1.00444 0.99432 1.17135 0.90015 0.83905 1.07809 1.42228 1.23997 1.11052 1.54465 1.16249 0.84328 0.80776 0.79460 1.90829 1.23503 1.82626 1.53852 1.45331 1.18672 1.14937 1.58042 1.18469 0.95377 0.80181 0.89683 1.21559 1.01892 0.99782 1.36327 0.89857 1.26064 0.99052 1.00447 0.93924 1.70135 1.28172 1.23433 1.35083 0.85179 0.78058 0.76874 0.78915 1.18698 1.20965 1.18642 0.91751 0.87896 0.92594 0.90313 0.91218 0.82177 0.89603 0.90800 0.90063 0.84230 0.86472 0.74502 0.75926 0.99454 0.99205 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.05 0.70 5.46 71.98 0.39 1.10 16 3 O -0.33 -8.11 9.69 -93.42 -0.91 -9.01 16 4 C 0.10 2.80 6.70 22.59 0.15 2.95 16 5 C -0.19 -4.06 8.69 22.35 0.19 -3.87 16 6 C -0.07 -1.42 5.88 -19.85 -0.12 -1.54 16 7 C -0.11 -1.42 10.01 71.24 0.71 -0.70 16 8 C -0.15 -3.93 9.69 22.27 0.22 -3.71 16 9 C -0.11 -3.68 8.71 22.38 0.19 -3.49 16 10 C 0.11 3.63 6.32 38.17 0.24 3.87 16 11 N -0.67 -23.80 5.20 -316.80 -1.65 -25.45 16 12 C 0.69 31.32 8.41 179.06 1.51 32.82 16 13 O -0.63 -33.58 13.76 -4.03 -0.06 -33.63 16 14 N -0.72 -32.70 5.55 -482.29 -2.68 -35.38 16 15 C 0.29 16.28 5.43 85.63 0.46 16.75 16 16 C -0.56 -31.06 9.28 25.60 0.24 -30.82 16 17 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 18 C 0.00 0.28 5.46 84.65 0.46 0.74 16 19 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 20 Si 0.99 42.87 29.54 68.60 2.03 44.89 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.90 7.66 -2.39 -0.02 0.88 16 28 H 0.07 0.93 7.66 -2.38 -0.02 0.91 16 29 H 0.16 2.29 6.30 -2.91 -0.02 2.27 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 33 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.12 4.84 6.18 -2.91 -0.02 4.82 16 35 H 0.42 12.23 8.58 -92.71 -0.80 11.44 16 36 H 0.41 15.43 8.34 -92.71 -0.77 14.66 16 37 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -75.43 332.37 1.93 -73.50 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.49 Total: 28.63 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 5.40 Total: 13.00 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -4.04 Total: -117.38 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.96 Total: -42.64 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.43 1.93 -73.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488350447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.157 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds