Wall clock time and date at job start Tue Mar 31 2020 00:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.46586 * 2 1 4 4 C 1.35983 * 116.99737 * 179.97438 * 3 2 1 5 5 C 1.38737 * 119.98327 * 0.02562 * 4 3 2 6 6 C 1.38074 * 120.01317 * 179.97438 * 5 4 3 7 7 C 1.38858 * 119.98488 * 359.97438 * 6 5 4 8 8 N 1.40147 * 120.01322 * 179.97438 * 7 6 5 9 9 C 1.34783 * 120.00349 * 325.28242 * 8 7 6 10 10 O 1.21592 * 119.99709 * 4.49580 * 9 8 7 11 11 N 1.34774 * 120.00279 * 184.49782 * 9 8 7 12 12 C 1.46493 * 120.00221 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47524 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99620 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00224 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00113 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99826 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47353 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47116 * 119.99990 * 17 15 13 20 20 H 1.48498 * 109.47141 * 240.00195 * 17 15 13 21 21 C 1.38811 * 119.97405 * 0.02562 * 7 6 5 22 22 C 1.50693 * 120.01033 * 180.02562 * 21 7 6 23 23 C 1.38128 * 119.98285 * 359.71918 * 21 7 6 24 24 H 1.09000 * 109.46980 * 299.99998 * 1 2 3 25 25 H 1.08998 * 109.47382 * 60.00124 * 1 2 3 26 26 H 1.09006 * 109.46496 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47382 * 119.99876 * 2 1 3 28 28 H 1.09000 * 109.46980 * 240.00002 * 2 1 3 29 29 H 1.08001 * 119.99750 * 0.02562 * 5 4 3 30 30 H 1.08000 * 120.00989 * 179.97438 * 6 5 4 31 31 H 0.97003 * 120.00101 * 145.27928 * 8 7 6 32 32 H 0.96998 * 119.99788 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.47323 * 300.00194 * 12 11 9 34 34 H 1.09002 * 109.47062 * 59.99864 * 12 11 9 35 35 H 0.97000 * 119.99978 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.47408 * 89.99784 * 22 21 7 37 37 H 1.08999 * 109.47531 * 209.99393 * 22 21 7 38 38 H 1.09001 * 109.47362 * 329.99374 * 22 21 7 39 39 H 1.07997 * 119.99079 * 180.29544 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1992 0.4251 0.0005 6 6 5.5681 0.6053 0.0005 7 6 6.0992 1.8884 0.0000 8 7 7.4885 2.0720 0.0006 9 6 8.2821 1.2096 0.6663 10 8 7.8013 0.2272 1.1976 11 7 9.6085 1.4361 0.7430 12 6 10.4709 0.4990 1.4670 13 6 11.8984 0.9777 1.4027 14 1 12.1390 1.8892 0.8757 15 6 12.8970 0.2527 2.0177 16 7 12.6039 -0.8568 2.6599 17 14 14.6663 0.8466 1.9387 18 1 14.7300 2.1107 1.1619 19 1 15.1705 1.0849 3.3150 20 1 15.5052 -0.1838 1.2756 21 6 5.2533 2.9890 0.0001 22 6 5.8287 4.3818 -0.0011 23 6 3.8840 2.8073 -0.0053 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7861 -0.5728 -0.0003 30 1 6.2258 -0.2514 0.0009 31 1 7.8791 2.8198 -0.4781 32 1 9.9919 2.2200 0.3195 33 1 10.1528 0.4424 2.5080 34 1 10.3983 -0.4883 1.0108 35 1 13.3065 -1.3670 3.0923 36 1 5.9668 4.7171 -1.0290 37 1 5.1452 5.0577 0.5128 38 1 6.7903 4.3781 0.5122 39 1 3.2259 3.6635 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488394392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:36 Heat of formation + Delta-G solvation = -51.413663 kcal Electronic energy + Delta-G solvation = -20771.009575 eV Core-core repulsion = 17485.735859 eV Total energy + Delta-G solvation = -3285.273716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51237 -39.38958 -37.59594 -34.37418 -34.02421 -32.43954 -32.37613 -31.78530 -28.80035 -27.33221 -26.46577 -23.68152 -23.28530 -22.13173 -20.78485 -20.21832 -18.22456 -17.82167 -17.32194 -16.19366 -16.12086 -15.73457 -14.92654 -14.74286 -14.24849 -14.10746 -13.89256 -13.80491 -13.24433 -13.13621 -13.01840 -12.85593 -12.56542 -12.10927 -12.01667 -11.88006 -11.76949 -11.68783 -11.03529 -10.95973 -10.91291 -10.74951 -10.32591 -9.68502 -9.39643 -9.36136 -8.77476 -8.69105 -7.99624 -7.42275 -6.18700 -4.25537 1.38136 1.56041 3.11785 3.22372 3.23203 3.30410 3.33953 3.63888 4.01231 4.30257 4.72173 4.72492 4.86828 4.94649 4.99366 5.04375 5.10809 5.17735 5.29208 5.40763 5.46862 5.54527 5.55596 5.72285 5.78787 5.86968 6.10493 6.18501 6.51441 6.51907 6.64258 7.04648 7.09140 7.40637 7.47892 7.49802 7.51145 7.82524 7.97836 8.68629 8.83477 9.20525 9.41995 10.91550 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036015 B = 0.003026 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.272710 B = 9251.729688 C = 9922.196251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.106 3.894 5 C -0.193 4.193 6 C -0.078 4.078 7 C 0.143 3.857 8 N -0.692 5.692 9 C 0.690 3.310 10 O -0.585 6.585 11 N -0.723 5.723 12 C 0.266 3.734 13 C -0.543 4.543 14 H 0.064 0.936 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.083 4.083 22 C -0.113 4.113 23 C -0.136 4.136 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.147 0.853 31 H 0.401 0.599 32 H 0.388 0.612 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.139 7.045 -7.716 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.060 3.940 5 C -0.212 4.212 6 C -0.098 4.098 7 C 0.047 3.953 8 N -0.341 5.341 9 C 0.391 3.609 10 O -0.463 6.463 11 N -0.374 5.374 12 C 0.145 3.855 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.086 4.086 22 C -0.169 4.169 23 C -0.155 4.155 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.165 0.835 31 H 0.237 0.763 32 H 0.220 0.780 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.507 6.090 -7.059 21.621 hybrid contribution 1.473 0.626 -0.332 1.635 sum -18.034 6.716 -7.391 20.614 Atomic orbital electron populations 1.21767 0.92998 1.02703 1.03331 1.22737 0.95565 0.82332 1.01499 1.86027 1.19263 1.28923 1.89283 1.18860 0.82009 0.94052 0.99059 1.21122 0.93789 0.97905 1.08421 1.21231 0.94435 0.97250 0.96884 1.17276 0.82136 0.93064 1.02829 1.42750 1.04249 1.31876 1.55243 1.16171 0.82170 0.82953 0.79628 1.90863 1.74042 1.29294 1.52091 1.45763 1.04575 1.29436 1.57661 1.19044 0.87035 0.87805 0.91621 1.21245 0.91420 1.09788 1.35650 0.91829 1.24949 0.99570 0.94735 0.94781 1.69985 1.33492 1.14871 1.33865 0.86345 0.83825 0.78725 0.77907 1.19650 1.20781 1.20789 1.19420 0.92151 0.94765 1.02315 1.20717 1.01508 0.92424 1.02276 1.19942 0.93610 0.94729 1.07250 0.91617 0.91665 0.90512 0.92033 0.92137 0.85557 0.83518 0.76347 0.77950 0.95533 0.95537 0.92460 0.91081 0.91151 0.91292 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -3.95 10.14 -19.69 -0.20 -4.15 16 4 C 0.11 1.43 6.69 -39.23 -0.26 1.17 16 5 C -0.19 -2.73 9.03 -39.46 -0.36 -3.08 16 6 C -0.08 -1.28 8.69 -39.41 -0.34 -1.62 16 7 C 0.14 2.23 6.29 -83.61 -0.53 1.70 16 8 N -0.69 -10.82 4.76 -14.19 -0.07 -10.89 16 9 C 0.69 14.13 8.41 -86.91 -0.73 13.40 16 10 O -0.58 -14.23 13.76 5.28 0.07 -14.16 16 11 N -0.72 -15.15 5.55 -66.42 -0.37 -15.52 16 12 C 0.27 7.01 5.43 -5.20 -0.03 6.98 16 13 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.88 -25.94 13.29 55.43 0.74 -25.20 16 17 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.08 -1.09 5.89 -104.45 -0.62 -1.70 16 22 C -0.11 -1.10 9.47 36.00 0.34 -0.76 16 23 C -0.14 -1.74 9.64 -39.45 -0.38 -2.12 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.55 7.66 -51.93 -0.40 0.16 16 28 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 29 H 0.13 1.52 6.29 -52.49 -0.33 1.19 16 30 H 0.15 2.73 6.19 -52.49 -0.33 2.41 16 31 H 0.40 4.86 7.86 -40.82 -0.32 4.54 16 32 H 0.39 6.85 8.34 -40.82 -0.34 6.51 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.07 0.70 7.16 -51.93 -0.37 0.32 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -32.73 330.44 -8.00 -40.73 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.40 Total: 7.76 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.73 Total: 0.76 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.30 Total: -51.61 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.13 Total: -18.30 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.73 -8.00 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488394392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.681 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds