Wall clock time and date at job start Tue Mar 31 2020 00:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.46586 * 2 1 4 4 C 1.35983 * 116.99737 * 179.97438 * 3 2 1 5 5 C 1.38737 * 119.98327 * 0.02562 * 4 3 2 6 6 C 1.38074 * 120.01317 * 179.97438 * 5 4 3 7 7 C 1.38858 * 119.98488 * 359.97438 * 6 5 4 8 8 N 1.40147 * 120.01322 * 179.97438 * 7 6 5 9 9 C 1.34783 * 120.00349 * 325.28242 * 8 7 6 10 10 O 1.21592 * 119.99709 * 4.49580 * 9 8 7 11 11 N 1.34774 * 120.00279 * 184.49782 * 9 8 7 12 12 C 1.46493 * 120.00221 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47524 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99620 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00224 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00113 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99826 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47353 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47116 * 119.99990 * 17 15 13 20 20 H 1.48498 * 109.47141 * 240.00195 * 17 15 13 21 21 C 1.38811 * 119.97405 * 0.02562 * 7 6 5 22 22 C 1.50693 * 120.01033 * 180.02562 * 21 7 6 23 23 C 1.38128 * 119.98285 * 359.71918 * 21 7 6 24 24 H 1.09000 * 109.46980 * 299.99998 * 1 2 3 25 25 H 1.08998 * 109.47382 * 60.00124 * 1 2 3 26 26 H 1.09006 * 109.46496 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47382 * 119.99876 * 2 1 3 28 28 H 1.09000 * 109.46980 * 240.00002 * 2 1 3 29 29 H 1.08001 * 119.99750 * 0.02562 * 5 4 3 30 30 H 1.08000 * 120.00989 * 179.97438 * 6 5 4 31 31 H 0.97003 * 120.00101 * 145.27928 * 8 7 6 32 32 H 0.96998 * 119.99788 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.47323 * 300.00194 * 12 11 9 34 34 H 1.09002 * 109.47062 * 59.99864 * 12 11 9 35 35 H 0.97000 * 119.99978 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.47408 * 89.99784 * 22 21 7 37 37 H 1.08999 * 109.47531 * 209.99393 * 22 21 7 38 38 H 1.09001 * 109.47362 * 329.99374 * 22 21 7 39 39 H 1.07997 * 119.99079 * 180.29544 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1992 0.4251 0.0005 6 6 5.5681 0.6053 0.0005 7 6 6.0992 1.8884 0.0000 8 7 7.4885 2.0720 0.0006 9 6 8.2821 1.2096 0.6663 10 8 7.8013 0.2272 1.1976 11 7 9.6085 1.4361 0.7430 12 6 10.4709 0.4990 1.4670 13 6 11.8984 0.9777 1.4027 14 1 12.1390 1.8892 0.8757 15 6 12.8970 0.2527 2.0177 16 7 12.6039 -0.8568 2.6599 17 14 14.6663 0.8466 1.9387 18 1 14.7300 2.1107 1.1619 19 1 15.1705 1.0849 3.3150 20 1 15.5052 -0.1838 1.2756 21 6 5.2533 2.9890 0.0001 22 6 5.8287 4.3818 -0.0011 23 6 3.8840 2.8073 -0.0053 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7861 -0.5728 -0.0003 30 1 6.2258 -0.2514 0.0009 31 1 7.8791 2.8198 -0.4781 32 1 9.9919 2.2200 0.3195 33 1 10.1528 0.4424 2.5080 34 1 10.3983 -0.4883 1.0108 35 1 13.3065 -1.3670 3.0923 36 1 5.9668 4.7171 -1.0290 37 1 5.1452 5.0577 0.5128 38 1 6.7903 4.3781 0.5122 39 1 3.2259 3.6635 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488394392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:36 Heat of formation + Delta-G solvation = -73.751235 kcal Electronic energy + Delta-G solvation = -20771.978205 eV Core-core repulsion = 17485.735859 eV Total energy + Delta-G solvation = -3286.242346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.78733 -40.66920 -38.78924 -36.22243 -35.46426 -34.32678 -33.46806 -32.60325 -30.11421 -28.89194 -27.69974 -25.02489 -24.45269 -23.62400 -21.91860 -21.73051 -19.86715 -18.81658 -18.64491 -17.98800 -17.07573 -16.96354 -16.75625 -16.33587 -15.80677 -15.33650 -15.10355 -14.85243 -14.61900 -14.24075 -14.06989 -14.00802 -13.83796 -13.62930 -13.34057 -12.89417 -12.79385 -12.71748 -12.70805 -12.56401 -12.21808 -11.96069 -11.73696 -11.45252 -11.21423 -10.82325 -10.79434 -9.89074 -9.76361 -8.63211 -8.29104 -6.45415 0.29894 0.39640 1.43889 1.45358 1.58242 1.74060 2.10705 2.27739 2.39098 2.78557 3.06359 3.41471 3.83370 3.87127 4.06359 4.11776 4.18934 4.32595 4.38902 4.47255 4.61695 4.80041 4.85303 4.95749 4.95983 5.03806 5.08234 5.22494 5.24815 5.26214 5.38843 5.41895 5.46859 5.51075 5.66410 5.82761 5.88287 6.19006 6.46451 6.66020 7.17985 7.25399 7.60800 8.83432 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036015 B = 0.003026 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.272710 B = 9251.729688 C = 9922.196251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.326 6.326 4 C 0.108 3.892 5 C -0.200 4.200 6 C -0.101 4.101 7 C 0.112 3.888 8 N -0.668 5.668 9 C 0.690 3.310 10 O -0.629 6.629 11 N -0.715 5.715 12 C 0.285 3.715 13 C -0.553 4.553 14 H 0.085 0.915 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.986 3.014 18 H -0.252 1.252 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.070 4.070 22 C -0.113 4.113 23 C -0.138 4.138 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.421 0.579 32 H 0.407 0.593 33 H -0.013 1.013 34 H -0.012 1.012 35 H 0.269 0.731 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.645 9.706 -8.799 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.240 6.240 4 C 0.062 3.938 5 C -0.219 4.219 6 C -0.122 4.122 7 C 0.018 3.982 8 N -0.318 5.318 9 C 0.391 3.609 10 O -0.510 6.510 11 N -0.369 5.369 12 C 0.162 3.838 13 C -0.591 4.591 14 H 0.103 0.897 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.809 3.191 18 H -0.176 1.176 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.073 4.073 22 C -0.169 4.169 23 C -0.156 4.156 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.259 0.741 32 H 0.243 0.757 33 H 0.005 0.995 34 H 0.006 0.994 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.057 8.822 -8.197 23.395 hybrid contribution 1.423 -0.232 -0.015 1.442 sum -18.634 8.590 -8.211 22.101 Atomic orbital electron populations 1.21788 0.90992 1.04114 1.03402 1.23036 0.97173 0.81091 1.01870 1.86039 1.18289 1.30784 1.88904 1.19041 0.82602 0.94191 0.97962 1.21200 0.92963 0.99144 1.08608 1.21101 0.95190 0.96947 0.98927 1.17499 0.81944 0.93715 1.05078 1.42338 1.04124 1.31222 1.54155 1.16285 0.82095 0.83017 0.79539 1.90842 1.74793 1.31404 1.53938 1.45305 1.04560 1.29357 1.57671 1.18459 0.88347 0.87412 0.89575 1.21624 0.91323 1.10499 1.35687 0.89651 1.26065 1.04890 0.94639 0.94038 1.70146 1.35326 1.16510 1.34979 0.85088 0.77099 0.78786 0.78089 1.17558 1.20509 1.20514 1.19740 0.91979 0.95546 1.00024 1.20833 1.01551 0.90450 1.04074 1.20321 0.93847 0.95308 1.06172 0.91723 0.91374 0.88460 0.92066 0.91427 0.84347 0.86736 0.74061 0.75718 0.99475 0.99375 0.92234 0.88635 0.89276 0.91586 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.04 0.74 5.46 71.98 0.39 1.13 16 3 O -0.33 -7.50 10.14 -93.36 -0.95 -8.44 16 4 C 0.11 2.79 6.69 22.50 0.15 2.94 16 5 C -0.20 -5.72 9.03 22.35 0.20 -5.52 16 6 C -0.10 -3.47 8.69 22.38 0.19 -3.28 16 7 C 0.11 3.49 6.29 38.10 0.24 3.73 16 8 N -0.67 -20.77 4.76 -317.05 -1.51 -22.28 16 9 C 0.69 29.18 8.41 179.05 1.51 30.69 16 10 O -0.63 -32.48 13.76 -4.01 -0.06 -32.54 16 11 N -0.72 -30.61 5.55 -482.31 -2.68 -33.29 16 12 C 0.29 15.72 5.43 85.63 0.46 16.18 16 13 C -0.55 -29.90 9.28 25.60 0.24 -29.67 16 14 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 15 C 0.00 0.18 5.46 84.66 0.46 0.64 16 16 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 17 Si 0.99 42.08 29.54 68.60 2.03 44.10 16 18 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 21 C -0.07 -1.68 5.89 -19.76 -0.12 -1.80 16 22 C -0.11 -1.82 9.47 71.23 0.67 -1.15 16 23 C -0.14 -3.19 9.64 22.35 0.22 -2.98 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 28 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 29 H 0.14 3.43 6.29 -2.91 -0.02 3.41 16 30 H 0.11 4.65 6.19 -2.91 -0.02 4.63 16 31 H 0.42 9.55 7.86 -92.71 -0.73 8.82 16 32 H 0.41 14.07 8.34 -92.71 -0.77 13.30 16 33 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 38 H 0.07 1.14 7.16 -2.39 -0.02 1.12 16 39 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -74.15 330.44 2.06 -72.09 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.42 Total: 26.26 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.36 Total: 9.94 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.90 Total: -111.41 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.00 Total: -40.98 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -74.15 2.06 -72.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488394392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.664 kcal (2) G-P(sol) polarization free energy of solvation -74.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds