Wall clock time and date at job start Tue Mar 31 2020 00:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46501 * 109.47516 * 2 1 4 4 C 1.46498 * 120.00242 * 274.95772 * 3 2 1 5 5 C 1.50696 * 109.47261 * 262.80521 * 4 3 2 6 6 H 1.08003 * 119.99707 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00318 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00032 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00000 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47172 * 60.00246 * 9 7 5 11 11 H 1.48499 * 109.47194 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47137 * 300.00042 * 9 7 5 13 13 C 1.34777 * 119.99965 * 94.95071 * 3 2 1 14 14 O 1.21565 * 119.99713 * 3.24778 * 13 3 2 15 15 C 1.47818 * 120.00223 * 183.24580 * 13 3 2 16 16 N 1.32862 * 119.78627 * 353.93268 * 15 13 3 17 17 C 1.31372 * 121.70261 * 179.97438 * 16 15 13 18 18 C 1.38771 * 121.06437 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.27707 * 179.97438 * 18 17 16 20 20 C 1.38310 * 119.44380 * 0.23472 * 18 17 16 21 21 C 1.39344 * 118.43986 * 359.50168 * 20 18 17 22 22 O 1.35641 * 120.53969 * 180.22253 * 21 20 18 23 23 C 1.42893 * 117.00154 * 0.29636 * 22 21 20 24 24 H 1.09002 * 109.47667 * 59.99377 * 1 2 3 25 25 H 1.08999 * 109.47527 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47380 * 299.99393 * 1 2 3 27 27 H 1.09010 * 109.47121 * 240.00354 * 2 1 3 28 28 H 1.09002 * 109.47667 * 120.00623 * 2 1 3 29 29 H 1.09006 * 109.46951 * 22.80365 * 4 3 2 30 30 H 1.09002 * 109.47035 * 142.80135 * 4 3 2 31 31 H 0.96998 * 119.99968 * 179.97438 * 8 7 5 32 32 H 1.07994 * 119.47102 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47331 * 90.00793 * 19 18 17 34 34 H 1.09011 * 109.47244 * 210.00337 * 19 18 17 35 35 H 1.09000 * 109.47556 * 329.99892 * 19 18 17 36 36 H 1.08000 * 120.77815 * 179.72200 * 20 18 17 37 37 H 1.09005 * 109.47669 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.47238 * 300.00017 * 23 22 21 39 39 H 1.08996 * 109.47480 * 60.00071 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1592 2.1084 -1.2639 5 6 3.5901 2.0323 -1.7305 6 1 4.3215 1.4962 -1.1439 7 6 3.9655 2.6469 -2.9062 8 7 3.0750 3.3002 -3.6202 9 14 5.7394 2.5531 -3.4841 10 1 6.1201 1.1319 -3.6850 11 1 5.8822 3.2901 -4.7653 12 1 6.6262 3.1633 -2.4611 13 6 2.3380 1.9829 1.1629 14 8 2.2774 1.3611 2.2057 15 6 2.7622 3.3989 1.1702 16 7 2.9437 4.0395 0.0204 17 6 3.3197 5.2977 -0.0170 18 6 3.5446 6.0129 1.1508 19 6 3.9761 7.4553 1.0872 20 6 3.3745 5.3891 2.3735 21 6 2.9697 4.0558 2.3877 22 8 2.7856 3.4039 3.5628 23 6 3.0187 4.1473 4.7606 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.5079 1.6612 -2.0149 30 1 1.8803 3.1517 -1.1159 31 1 3.3392 3.7329 -4.4471 32 1 3.4561 5.7833 -0.9719 33 1 3.0957 8.0980 1.0810 34 1 4.5906 7.6894 1.9566 35 1 4.5542 7.6220 0.1783 36 1 3.5479 5.9239 3.2956 37 1 2.8365 3.5095 5.6256 38 1 4.0517 4.4950 4.7773 39 1 2.3464 5.0046 4.7929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488754421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:26 Heat of formation + Delta-G solvation = -37.283458 kcal Electronic energy + Delta-G solvation = -22541.056339 eV Core-core repulsion = 19256.395354 eV Total energy + Delta-G solvation = -3284.660985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -41.91938 -40.11230 -39.14970 -36.80896 -34.80332 -34.42373 -31.97382 -31.73267 -29.02207 -28.71046 -27.93819 -24.99612 -24.72298 -23.92713 -22.87755 -20.67461 -18.72572 -18.46966 -18.27434 -17.85185 -16.88681 -16.80833 -16.45346 -16.08474 -15.65241 -15.02690 -14.79888 -14.68770 -14.59049 -14.33699 -14.11124 -13.63279 -13.48909 -13.32816 -13.16090 -13.06572 -12.86696 -12.65845 -12.55489 -12.29401 -12.23381 -12.11210 -11.78069 -11.59843 -10.92253 -10.54871 -10.35097 -9.73673 -9.47248 -9.15333 -8.00999 -6.06792 -0.20048 0.39804 1.41316 1.41917 1.49421 1.91076 2.23941 2.38081 2.52006 2.97487 3.31015 3.45166 3.69705 3.78694 4.01957 4.14750 4.19591 4.30719 4.39159 4.40320 4.45111 4.55631 4.67147 4.76061 4.84565 4.86644 4.90300 5.02615 5.13821 5.18720 5.25601 5.27684 5.51411 5.64259 5.95142 6.03067 6.32830 6.35015 6.62348 6.95376 7.10444 7.43016 7.57357 9.05961 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012771 B = 0.008547 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.949045 B = 3275.209701 C = 4830.880801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.104 3.896 3 N -0.589 5.589 4 C 0.246 3.754 5 C -0.503 4.503 6 H 0.028 0.972 7 C 0.034 3.966 8 N -0.914 5.914 9 Si 0.938 3.062 10 H -0.280 1.280 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.559 3.441 14 O -0.578 6.578 15 C -0.008 4.008 16 N -0.377 5.377 17 C 0.031 3.969 18 C -0.063 4.063 19 C -0.108 4.108 20 C -0.181 4.181 21 C 0.128 3.872 22 O -0.307 6.307 23 C 0.009 3.991 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.003 0.997 30 H 0.076 0.924 31 H 0.262 0.738 32 H 0.158 0.842 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.182 0.818 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 8.478 11.917 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 N -0.318 5.318 4 C 0.126 3.874 5 C -0.542 4.542 6 H 0.046 0.954 7 C -0.166 4.166 8 N -0.554 5.554 9 Si 0.765 3.235 10 H -0.205 1.205 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.348 3.652 14 O -0.460 6.460 15 C -0.145 4.145 16 N -0.087 5.087 17 C -0.131 4.131 18 C -0.065 4.065 19 C -0.165 4.165 20 C -0.207 4.207 21 C 0.077 3.923 22 O -0.218 6.218 23 C -0.085 4.085 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.021 0.979 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.175 0.825 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.199 0.801 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.607 7.523 11.557 13.803 hybrid contribution 1.162 0.240 0.021 1.187 sum 0.555 7.763 11.577 13.950 Atomic orbital electron populations 1.21995 0.94422 1.03137 1.01167 1.21485 0.95470 0.82625 1.02291 1.48277 1.61587 1.14108 1.07863 1.19716 0.95387 0.94031 0.78294 1.21245 0.94944 1.32115 1.05909 0.95409 1.25280 0.99817 0.95022 0.96457 1.70001 1.34650 1.35502 1.15256 0.85948 0.82004 0.77977 0.77598 1.20550 1.20157 1.20660 1.18070 0.77493 0.86206 0.83454 1.90649 1.57161 1.65783 1.32448 1.20704 1.09851 0.95798 0.88117 1.68556 1.05769 1.09676 1.24672 1.23112 1.00435 0.90242 0.99329 1.21429 0.93871 0.99176 0.92065 1.20894 1.02745 0.88172 1.04658 1.21835 1.05756 0.92297 1.00770 1.20196 0.93527 0.92166 0.86375 1.86365 1.82617 1.40175 1.12660 1.23503 1.02294 0.98360 0.84324 0.93039 0.88981 0.93852 0.90682 0.91094 0.97945 0.90703 0.92855 0.82473 0.88620 0.88903 0.90281 0.80065 0.86729 0.91021 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 10.24 71.98 0.74 -4.39 16 2 C 0.10 4.29 6.17 86.38 0.53 4.82 16 3 N -0.59 -28.82 2.48 -829.59 -2.06 -30.87 16 4 C 0.25 13.12 4.79 85.63 0.41 13.53 16 5 C -0.50 -28.48 8.00 25.60 0.20 -28.27 16 6 H 0.03 1.65 7.81 -2.91 -0.02 1.63 16 7 C 0.03 1.85 5.46 84.65 0.46 2.32 16 8 N -0.91 -51.72 13.29 21.45 0.28 -51.44 16 9 Si 0.94 44.18 29.54 68.60 2.03 46.21 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.56 27.88 7.58 86.78 0.66 28.54 16 14 O -0.58 -29.77 14.65 16.99 0.25 -29.52 16 15 C -0.01 -0.35 6.64 41.92 0.28 -0.07 16 16 N -0.38 -17.35 4.99 -184.64 -0.92 -18.27 16 17 C 0.03 1.14 10.85 84.89 0.92 2.06 16 18 C -0.06 -1.74 5.90 -19.72 -0.12 -1.85 16 19 C -0.11 -1.81 10.03 71.23 0.71 -1.10 16 20 C -0.18 -4.92 8.80 22.55 0.20 -4.73 16 21 C 0.13 4.75 6.71 22.94 0.15 4.91 16 22 O -0.31 -10.90 8.58 -68.64 -0.59 -11.49 16 23 C 0.01 0.19 9.83 113.37 1.11 1.31 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 3.03 8.11 -2.38 -0.02 3.01 16 28 H 0.07 2.93 7.24 -2.39 -0.02 2.91 16 29 H 0.00 0.14 8.02 -2.38 -0.02 0.12 16 30 H 0.08 4.18 5.21 -3.95 -0.02 4.16 16 31 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.16 5.66 8.06 -2.91 -0.02 5.64 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.12 8.09 -2.38 -0.02 1.10 16 35 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 36 H 0.18 3.17 6.46 -2.91 -0.02 3.16 16 37 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.07 1.18 7.68 -2.38 -0.02 1.16 16 39 H 0.07 1.18 7.71 -2.39 -0.02 1.16 16 Total: -1.00 -73.57 327.33 6.30 -67.27 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.04 Total: 11.04 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.27 Total: 17.07 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -2.69 Total: -100.58 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.34 Total: -41.01 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.57 6.30 -67.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488754421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.991 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds