Wall clock time and date at job start Tue Mar 31 2020 00:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.47124 * 2 1 4 4 C 1.34386 * 116.99983 * 180.02562 * 3 2 1 5 5 C 1.36326 * 119.99764 * 180.02562 * 4 3 2 6 6 C 1.43192 * 119.99857 * 180.02562 * 5 4 3 7 7 N 5.80633 * 147.24613 * 359.97438 * 2 1 3 8 8 C 1.47021 * 119.99692 * 359.97438 * 5 4 3 9 9 O 1.21659 * 120.00431 * 323.75400 * 8 5 4 10 10 N 1.34777 * 119.99335 * 143.75616 * 8 5 4 11 11 C 1.46926 * 120.62569 * 173.84277 * 10 8 5 12 12 C 1.53200 * 108.89440 * 126.46089 * 11 10 8 13 13 C 1.53042 * 109.31010 * 54.55963 * 12 11 10 14 14 C 1.50707 * 109.45589 * 178.62966 * 13 12 11 15 15 H 1.08001 * 119.99795 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99794 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47299 * 59.99595 * 18 16 14 20 20 H 1.48498 * 109.47545 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47070 * 299.99877 * 18 16 14 22 22 C 1.53036 * 109.53846 * 298.63635 * 13 12 11 23 23 C 1.46966 * 120.65780 * 353.65346 * 10 8 5 24 24 H 1.08999 * 109.47112 * 299.99854 * 1 2 3 25 25 H 1.08996 * 109.47025 * 60.00191 * 1 2 3 26 26 H 1.09000 * 109.46729 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47587 * 240.00326 * 2 1 3 28 28 H 1.08996 * 109.47540 * 119.99703 * 2 1 3 29 29 H 1.07994 * 120.00098 * 359.97438 * 4 3 2 30 30 H 1.08993 * 109.58773 * 6.59977 * 11 10 8 31 31 H 1.09004 * 109.58575 * 246.31676 * 11 10 8 32 32 H 1.09000 * 109.49479 * 174.51209 * 12 11 10 33 33 H 1.08999 * 109.49316 * 294.57789 * 12 11 10 34 34 H 1.08997 * 109.46258 * 58.66168 * 13 12 11 35 35 H 0.97006 * 119.99629 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.49514 * 181.31924 * 22 13 12 37 37 H 1.09003 * 109.49654 * 301.41264 * 22 13 12 38 38 H 1.08994 * 109.46182 * 113.75290 * 23 10 8 39 39 H 1.09001 * 109.70751 * 353.46774 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3463 1.5451 -0.0005 5 6 3.8673 2.8049 0.0000 6 6 5.2869 2.9925 -0.0012 7 7 6.4131 3.1414 -0.0014 8 6 2.9716 3.9707 0.0005 9 8 1.9271 3.9358 -0.6223 10 7 3.3077 5.0783 0.6911 11 6 2.4928 6.2969 0.5940 12 6 2.1008 6.7453 2.0055 13 6 3.3635 6.8998 2.8564 14 6 2.9843 7.3733 4.2360 15 1 1.9470 7.5470 4.4811 16 6 3.9619 7.5856 5.1848 17 7 5.2252 7.3744 4.8860 18 14 3.4920 8.1718 6.8950 19 1 2.5876 7.1783 7.5277 20 1 4.7170 8.3231 7.7205 21 1 2.7976 9.4808 6.7962 22 6 4.0794 5.5511 2.9593 23 6 4.4938 5.0892 1.5588 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0042 0.6887 -0.0005 30 1 1.5938 6.0901 0.0135 31 1 3.0689 7.0840 0.1074 32 1 1.5791 7.7009 1.9519 33 1 1.4470 5.9985 2.4560 34 1 4.0274 7.6288 2.3920 35 1 5.9130 7.5242 5.5535 36 1 4.9659 5.6566 3.5848 37 1 3.4074 4.8153 3.4011 38 1 5.2352 5.7767 1.1517 39 1 4.9173 4.0864 1.6151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490844145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:15 Heat of formation + Delta-G solvation = -29.914442 kcal Electronic energy + Delta-G solvation = -21738.272145 eV Core-core repulsion = 18453.930705 eV Total energy + Delta-G solvation = -3284.341440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.09762 -38.97870 -36.66111 -36.60459 -33.42083 -33.01921 -31.46841 -30.63736 -29.94845 -26.28682 -24.20454 -23.53267 -22.74098 -22.05621 -20.59257 -19.03349 -17.91488 -17.32956 -16.46486 -16.29111 -15.85486 -15.55506 -14.65296 -14.51962 -13.87647 -13.57544 -13.32896 -13.19165 -13.10645 -12.88271 -12.81922 -12.64544 -12.51703 -12.23182 -12.16291 -11.76656 -11.48475 -11.34073 -11.14815 -10.89754 -10.63519 -10.34133 -10.06526 -9.63724 -9.40572 -9.12241 -8.88088 -8.74445 -8.34003 -7.91168 -5.99157 -4.05715 0.98924 2.46239 2.84624 3.05711 3.31906 3.36819 3.39440 3.44208 3.74270 4.20025 4.35366 4.43666 4.57336 4.63334 4.85370 5.14607 5.29943 5.33604 5.51348 5.65810 5.69824 5.82908 5.88693 6.01921 6.15482 6.21149 6.36384 6.50628 6.71393 6.84160 6.96156 7.09593 7.19939 7.33018 7.60141 7.70180 7.96050 7.97631 8.08085 8.43774 8.61618 8.97634 9.59161 11.06234 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.004547 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.521860 B = 6156.845949 C = 6538.716703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.049 3.951 3 O -0.282 6.282 4 C 0.191 3.809 5 C -0.194 4.194 6 C 0.272 3.728 7 N -0.421 5.421 8 C 0.575 3.425 9 O -0.539 6.539 10 N -0.596 5.596 11 C 0.114 3.886 12 C -0.122 4.122 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.121 4.121 23 C 0.103 3.897 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.104 0.896 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 -15.218 -9.280 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 O -0.190 6.190 4 C 0.117 3.883 5 C -0.203 4.203 6 C -0.041 4.041 7 N -0.100 5.100 8 C 0.362 3.638 9 O -0.418 6.418 10 N -0.328 5.328 11 C -0.008 4.008 12 C -0.160 4.160 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.160 4.160 23 C -0.019 4.019 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.163 0.837 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.246 -14.841 -9.523 18.137 hybrid contribution -0.309 0.071 1.139 1.182 sum -4.555 -14.770 -8.384 17.583 Atomic orbital electron populations 1.21770 0.92178 1.02821 1.04413 1.23500 0.97066 0.79886 1.02040 1.86437 1.18849 1.30116 1.83607 1.23087 0.84534 0.95750 0.84899 1.16954 0.85639 0.93963 1.23706 1.24756 0.91612 0.94579 0.93183 1.81312 1.11474 1.06453 1.10741 1.17407 0.84997 0.81779 0.79600 1.90770 1.24375 1.81652 1.44977 1.48131 1.28186 1.12131 1.44374 1.21700 0.95001 0.84985 0.99154 1.21996 1.00534 0.99992 0.93525 1.18640 0.91165 0.92899 0.94338 1.21168 0.93179 1.44258 0.96419 0.92707 1.24966 0.94990 0.95406 0.98597 1.69840 0.99543 1.49164 1.34487 0.86680 0.77720 0.79331 0.84385 1.20353 1.21349 1.20311 1.22005 1.03265 0.98413 0.92268 1.22177 0.86149 1.00463 0.93130 0.91059 0.91004 0.90214 0.91069 0.91056 0.83706 0.90104 0.92236 0.92122 0.92826 0.95475 0.92931 0.87836 0.94158 0.92218 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.62 16 2 C 0.05 0.32 6.84 37.16 0.25 0.58 16 3 O -0.28 -3.22 8.68 -33.96 -0.29 -3.52 16 4 C 0.19 2.02 10.10 30.04 0.30 2.32 16 5 C -0.19 -2.81 5.21 -105.10 -0.55 -3.36 16 6 C 0.27 4.14 11.82 -22.47 -0.27 3.87 16 7 N -0.42 -7.08 18.48 41.84 0.77 -6.30 16 8 C 0.57 10.44 7.17 -12.70 -0.09 10.35 16 9 O -0.54 -10.79 15.30 -13.75 -0.21 -11.00 16 10 N -0.60 -11.40 2.98 -174.15 -0.52 -11.92 16 11 C 0.11 2.15 6.44 -3.71 -0.02 2.12 16 12 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 13 C 0.05 1.17 2.06 -91.73 -0.19 0.99 16 14 C -0.51 -13.83 8.56 -34.44 -0.29 -14.13 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -25.02 11.31 55.43 0.63 -24.39 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.12 -2.80 5.15 -26.62 -0.14 -2.94 16 23 C 0.10 2.05 5.50 -3.69 -0.02 2.03 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.15 0.85 8.00 -52.49 -0.42 0.43 16 30 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.10 2.67 6.03 -51.93 -0.31 2.36 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.21 4.56 -51.93 -0.24 0.97 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -32.21 328.55 -6.08 -38.30 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.53 Total: -2.27 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.87 Total: 0.09 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.88 Total: -42.61 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.50 Total: -14.52 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.21 -6.08 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490844145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.383 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds