Wall clock time and date at job start Tue Mar 31 2020 00:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.47124 * 2 1 4 4 C 1.34386 * 116.99983 * 180.02562 * 3 2 1 5 5 C 1.36326 * 119.99764 * 180.02562 * 4 3 2 6 6 C 1.43192 * 119.99857 * 180.02562 * 5 4 3 7 7 N 5.80633 * 147.24613 * 359.97438 * 2 1 3 8 8 C 1.47021 * 119.99692 * 359.97438 * 5 4 3 9 9 O 1.21659 * 120.00431 * 323.75400 * 8 5 4 10 10 N 1.34777 * 119.99335 * 143.75616 * 8 5 4 11 11 C 1.46926 * 120.62569 * 173.84277 * 10 8 5 12 12 C 1.53200 * 108.89440 * 126.46089 * 11 10 8 13 13 C 1.53042 * 109.31010 * 54.55963 * 12 11 10 14 14 C 1.50707 * 109.45589 * 178.62966 * 13 12 11 15 15 H 1.08001 * 119.99795 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99794 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47299 * 59.99595 * 18 16 14 20 20 H 1.48498 * 109.47545 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47070 * 299.99877 * 18 16 14 22 22 C 1.53036 * 109.53846 * 298.63635 * 13 12 11 23 23 C 1.46966 * 120.65780 * 353.65346 * 10 8 5 24 24 H 1.08999 * 109.47112 * 299.99854 * 1 2 3 25 25 H 1.08996 * 109.47025 * 60.00191 * 1 2 3 26 26 H 1.09000 * 109.46729 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47587 * 240.00326 * 2 1 3 28 28 H 1.08996 * 109.47540 * 119.99703 * 2 1 3 29 29 H 1.07994 * 120.00098 * 359.97438 * 4 3 2 30 30 H 1.08993 * 109.58773 * 6.59977 * 11 10 8 31 31 H 1.09004 * 109.58575 * 246.31676 * 11 10 8 32 32 H 1.09000 * 109.49479 * 174.51209 * 12 11 10 33 33 H 1.08999 * 109.49316 * 294.57789 * 12 11 10 34 34 H 1.08997 * 109.46258 * 58.66168 * 13 12 11 35 35 H 0.97006 * 119.99629 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.49514 * 181.31924 * 22 13 12 37 37 H 1.09003 * 109.49654 * 301.41264 * 22 13 12 38 38 H 1.08994 * 109.46182 * 113.75290 * 23 10 8 39 39 H 1.09001 * 109.70751 * 353.46774 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3463 1.5451 -0.0005 5 6 3.8673 2.8049 0.0000 6 6 5.2869 2.9925 -0.0012 7 7 6.4131 3.1414 -0.0014 8 6 2.9716 3.9707 0.0005 9 8 1.9271 3.9358 -0.6223 10 7 3.3077 5.0783 0.6911 11 6 2.4928 6.2969 0.5940 12 6 2.1008 6.7453 2.0055 13 6 3.3635 6.8998 2.8564 14 6 2.9843 7.3733 4.2360 15 1 1.9470 7.5470 4.4811 16 6 3.9619 7.5856 5.1848 17 7 5.2252 7.3744 4.8860 18 14 3.4920 8.1718 6.8950 19 1 2.5876 7.1783 7.5277 20 1 4.7170 8.3231 7.7205 21 1 2.7976 9.4808 6.7962 22 6 4.0794 5.5511 2.9593 23 6 4.4938 5.0892 1.5588 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0042 0.6887 -0.0005 30 1 1.5938 6.0901 0.0135 31 1 3.0689 7.0840 0.1074 32 1 1.5791 7.7009 1.9519 33 1 1.4470 5.9985 2.4560 34 1 4.0274 7.6288 2.3920 35 1 5.9130 7.5242 5.5535 36 1 4.9659 5.6566 3.5848 37 1 3.4074 4.8153 3.4011 38 1 5.2352 5.7767 1.1517 39 1 4.9173 4.0864 1.6151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490844145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:15 Heat of formation + Delta-G solvation = -49.262998 kcal Electronic energy + Delta-G solvation = -21739.111162 eV Core-core repulsion = 18453.930705 eV Total energy + Delta-G solvation = -3285.180456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36760 -40.04001 -38.27449 -37.80181 -35.27228 -33.93530 -32.97879 -31.88598 -31.44561 -28.10879 -25.51989 -24.53184 -24.06372 -23.51105 -22.02998 -20.59402 -19.29249 -18.35247 -18.21797 -17.25108 -16.99495 -16.85659 -16.46185 -16.05949 -15.31022 -15.02706 -14.66162 -14.60070 -14.29383 -14.18137 -14.01307 -13.90544 -13.72361 -13.49054 -13.26756 -13.17864 -12.94986 -12.76983 -12.46935 -12.36851 -12.15061 -11.95750 -11.85890 -11.47570 -11.00017 -10.99370 -10.70849 -10.39760 -9.78712 -9.45981 -8.06931 -6.21343 0.06334 1.43527 1.43988 1.46896 1.51835 1.66053 1.97951 2.11987 2.44634 2.53906 3.19402 3.30735 3.43480 3.90823 4.06332 4.15862 4.18606 4.28814 4.38983 4.44433 4.46783 4.58080 4.65899 4.70241 4.87057 4.90932 4.95910 5.01063 5.20564 5.23528 5.32584 5.41603 5.54177 5.64513 5.97077 6.10442 6.11628 6.38013 6.49204 6.51174 6.88703 7.20723 7.46761 8.96526 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.004547 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.521860 B = 6156.845949 C = 6538.716703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.040 3.960 3 O -0.312 6.312 4 C 0.248 3.752 5 C -0.249 4.249 6 C 0.295 3.705 7 N -0.461 5.461 8 C 0.576 3.424 9 O -0.563 6.563 10 N -0.606 5.606 11 C 0.118 3.882 12 C -0.111 4.111 13 C 0.045 3.955 14 C -0.534 4.534 15 H 0.052 0.948 16 C 0.015 3.985 17 N -0.916 5.916 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.110 4.110 23 C 0.121 3.879 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.204 0.796 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.046 0.954 34 H -0.001 1.001 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.048 0.952 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 -17.654 -9.473 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.032 4.032 3 O -0.218 6.218 4 C 0.172 3.828 5 C -0.258 4.258 6 C -0.017 4.017 7 N -0.141 5.141 8 C 0.365 3.635 9 O -0.444 6.444 10 N -0.338 5.338 11 C -0.004 4.004 12 C -0.149 4.149 13 C 0.026 3.974 14 C -0.572 4.572 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.778 3.222 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.149 4.149 23 C -0.002 4.002 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.220 0.780 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.017 0.983 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.048 -17.295 -9.726 20.474 hybrid contribution -0.240 0.683 1.164 1.371 sum -5.288 -16.612 -8.562 19.423 Atomic orbital electron populations 1.21842 0.92666 1.04197 1.02795 1.23942 0.96758 0.77591 1.04936 1.86413 1.19631 1.33946 1.81854 1.23739 0.84877 0.95889 0.78267 1.16646 0.84647 0.94080 1.30414 1.24736 0.91478 0.93656 0.91858 1.81338 1.12469 1.07306 1.12987 1.17893 0.85124 0.82054 0.78379 1.90742 1.25776 1.82078 1.45777 1.48169 1.27955 1.12802 1.44890 1.21613 0.95558 0.85511 0.97755 1.21833 0.98683 1.00252 0.94163 1.18614 0.92264 0.92725 0.93795 1.21522 0.93166 1.44644 0.97843 0.92982 1.25699 0.94936 0.95526 1.02165 1.69980 1.00312 1.49720 1.35500 0.85703 0.77491 0.78964 0.80027 1.19726 1.21022 1.19805 1.21760 1.01594 0.97641 0.93930 1.21854 0.86202 1.00970 0.91138 0.92831 0.92492 0.87341 0.87965 0.88304 0.77994 0.89268 0.91635 0.91447 0.93498 0.98285 0.93003 0.90661 0.94812 0.93349 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 10.29 71.98 0.74 -0.90 16 2 C 0.04 0.35 6.84 71.98 0.49 0.84 16 3 O -0.31 -6.07 8.68 -58.39 -0.51 -6.58 16 4 C 0.25 4.25 10.10 67.37 0.68 4.93 16 5 C -0.25 -6.73 5.21 -20.18 -0.11 -6.84 16 6 C 0.29 8.61 11.82 88.33 1.04 9.65 16 7 N -0.46 -15.22 18.48 19.00 0.35 -14.87 16 8 C 0.58 20.47 7.17 86.55 0.62 21.09 16 9 O -0.56 -22.15 15.30 13.92 0.21 -21.94 16 10 N -0.61 -23.21 2.98 -823.13 -2.45 -25.66 16 11 C 0.12 4.47 6.44 86.37 0.56 5.03 16 12 C -0.11 -4.71 5.30 30.68 0.16 -4.55 16 13 C 0.04 2.24 2.06 -11.51 -0.02 2.22 16 14 C -0.53 -29.39 8.56 25.60 0.22 -29.18 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 16 C 0.02 0.85 5.30 84.65 0.45 1.30 16 17 N -0.92 -52.52 11.31 21.45 0.24 -52.28 16 18 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 C -0.11 -5.26 5.15 30.67 0.16 -5.10 16 23 C 0.12 4.89 5.50 86.35 0.47 5.37 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.20 1.10 8.00 -2.91 -0.02 1.07 16 30 H 0.09 3.25 7.00 -2.39 -0.02 3.23 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 36 H 0.08 4.03 6.03 -2.38 -0.01 4.01 16 37 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 39 H 0.08 3.05 4.56 -2.39 -0.01 3.04 16 Total: -1.00 -72.33 328.55 6.39 -65.94 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.05 Total: 6.01 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.47 Total: 3.87 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -1.86 Total: -92.82 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.29 Total: -28.52 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -72.33 6.39 -65.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490844145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.676 kcal (2) G-P(sol) polarization free energy of solvation -72.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds