Wall clock time and date at job start Tue Mar 31 2020 00:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47138 * 2 1 4 4 C 1.34381 * 116.99987 * 179.97438 * 3 2 1 5 5 C 1.36325 * 120.00205 * 180.02562 * 4 3 2 6 6 C 1.43200 * 119.99608 * 0.02562 * 5 4 3 7 7 N 4.90256 * 99.07126 * 0.02562 * 2 1 3 8 8 C 1.47012 * 120.00093 * 179.97438 * 5 4 3 9 9 O 1.21663 * 119.99657 * 36.65072 * 8 5 4 10 10 N 1.34780 * 120.00413 * 216.63974 * 8 5 4 11 11 C 1.46917 * 120.63114 * 185.86190 * 10 8 5 12 12 C 1.52770 * 109.00568 * 233.58465 * 11 10 8 13 13 C 1.53043 * 109.38194 * 305.58617 * 12 11 10 14 14 C 1.50701 * 109.44457 * 181.25087 * 13 12 11 15 15 H 1.08003 * 119.99691 * 239.93757 * 14 13 12 16 16 C 1.37878 * 119.99793 * 59.94842 * 14 13 12 17 17 N 1.31509 * 120.00123 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99869 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46980 * 59.99271 * 18 16 14 20 20 H 1.48497 * 109.47099 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46974 * 299.99732 * 18 16 14 22 22 C 1.53042 * 109.53380 * 61.24314 * 13 12 11 23 23 C 1.46927 * 120.62499 * 6.14224 * 10 8 5 24 24 H 1.09004 * 109.47260 * 59.99661 * 1 2 3 25 25 H 1.09002 * 109.47299 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46999 * 299.99449 * 1 2 3 27 27 H 1.08993 * 109.47172 * 120.00830 * 2 1 3 28 28 H 1.09002 * 109.46999 * 240.00551 * 2 1 3 29 29 H 1.08002 * 120.00190 * 0.02562 * 4 3 2 30 30 H 1.08996 * 109.59140 * 353.41964 * 11 10 8 31 31 H 1.09002 * 109.58858 * 113.84622 * 11 10 8 32 32 H 1.09003 * 109.56059 * 185.55221 * 12 11 10 33 33 H 1.08998 * 109.38511 * 65.51653 * 12 11 10 34 34 H 1.08987 * 109.46291 * 301.22098 * 13 12 11 35 35 H 0.96997 * 119.99898 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.49457 * 178.68038 * 22 13 12 37 37 H 1.09000 * 109.52631 * 58.60253 * 22 13 12 38 38 H 1.09001 * 109.58588 * 246.15620 * 23 10 8 39 39 H 1.08995 * 109.59304 * 6.43530 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3462 1.5450 0.0005 5 6 3.8673 2.8047 0.0011 6 6 2.9950 3.9403 0.0017 7 7 2.3029 4.8412 0.0022 8 6 5.3248 2.9973 0.0023 9 8 6.0390 2.2390 -0.6263 10 7 5.8697 4.0140 0.6994 11 6 7.3084 4.2975 0.6085 12 6 7.8992 4.3292 2.0170 13 6 7.1148 5.3252 2.8744 14 6 7.7156 5.3803 4.2554 15 1 7.1160 5.1225 5.1158 16 6 9.0307 5.7602 4.4203 17 7 9.7609 6.0739 3.3725 18 14 9.7753 5.8293 6.1321 19 1 9.7098 4.4828 6.7551 20 1 11.1926 6.2625 6.0384 21 1 9.0154 6.7969 6.9637 22 6 5.6544 4.8780 2.9712 23 6 5.0372 4.8559 1.5693 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5139 0.8898 28 1 1.8933 -0.5138 -0.8901 29 1 4.0041 0.6885 0.0005 30 1 7.7985 3.5176 0.0257 31 1 7.4607 5.2647 0.1295 32 1 8.9441 4.6356 1.9676 33 1 7.8319 3.3356 2.4600 34 1 7.1624 6.3137 2.4179 35 1 10.6860 6.3415 3.4886 36 1 5.1016 5.5748 3.6012 37 1 5.6072 3.8792 3.4053 38 1 5.0005 5.8696 1.1702 39 1 4.0286 4.4458 1.6183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490844147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:21 Heat of formation + Delta-G solvation = -32.728264 kcal Electronic energy + Delta-G solvation = -21445.873782 eV Core-core repulsion = 18161.410326 eV Total energy + Delta-G solvation = -3284.463457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16026 -39.28632 -36.85785 -36.47878 -33.52489 -33.11289 -31.40079 -30.92192 -29.96986 -26.31124 -24.28428 -23.48838 -23.01348 -22.11496 -20.65735 -19.22115 -18.19230 -16.94835 -16.58368 -16.40354 -16.21973 -15.55672 -14.77632 -14.55044 -13.84084 -13.74684 -13.61704 -13.40741 -13.09950 -12.98417 -12.79230 -12.71732 -12.43577 -12.37780 -12.18274 -11.85903 -11.60810 -11.44673 -11.14772 -10.91226 -10.66421 -10.41313 -10.08030 -9.76370 -9.56453 -9.14858 -8.94471 -8.83464 -8.35973 -8.02236 -6.00873 -4.07519 0.93663 2.41338 2.74844 2.99227 3.31039 3.36126 3.38434 3.50322 3.64574 4.01837 4.38063 4.42204 4.44434 4.68814 4.75969 4.93254 5.22276 5.28822 5.32670 5.45134 5.61173 5.66290 5.80368 5.95416 6.06742 6.25184 6.42871 6.45429 6.63250 6.68168 6.82268 6.96405 7.19027 7.33364 7.66168 7.70231 7.83292 7.94345 8.06972 8.40125 8.43957 8.95491 9.57426 11.04651 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027067 B = 0.003808 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.224055 B = 7351.755655 C = 7511.551316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 O -0.312 6.312 4 C 0.192 3.808 5 C -0.190 4.190 6 C 0.272 3.728 7 N -0.429 5.429 8 C 0.581 3.419 9 O -0.551 6.551 10 N -0.589 5.589 11 C 0.110 3.890 12 C -0.123 4.123 13 C 0.048 3.952 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.122 4.122 23 C 0.103 3.897 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.161 0.839 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.040 0.960 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.860 -12.451 -6.637 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 O -0.221 6.221 4 C 0.119 3.881 5 C -0.199 4.199 6 C -0.041 4.041 7 N -0.108 5.108 8 C 0.368 3.632 9 O -0.431 6.431 10 N -0.320 5.320 11 C -0.011 4.011 12 C -0.161 4.161 13 C 0.030 3.970 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.160 4.160 23 C -0.020 4.020 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.178 0.822 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.519 -11.253 -7.005 19.660 hybrid contribution 0.794 -0.397 1.023 1.354 sum -13.725 -11.649 -5.983 18.971 Atomic orbital electron populations 1.21804 0.92330 1.03197 1.03981 1.23508 0.96653 0.79465 1.02692 1.86216 1.20095 1.31266 1.84563 1.23339 0.83599 0.96731 0.84407 1.17232 0.91877 0.87365 1.23437 1.25012 0.92957 0.92947 0.93205 1.81224 1.09378 1.09757 1.10392 1.17185 0.85126 0.81267 0.79643 1.90787 1.61883 1.45179 1.45243 1.48115 1.10343 1.30360 1.43147 1.21880 0.77871 1.00517 1.00858 1.21947 1.03657 0.99456 0.91089 1.18643 0.88262 0.94536 0.95573 1.21143 0.96314 1.45351 0.92371 0.92748 1.24959 0.97219 0.95119 0.96639 1.69826 1.08435 1.45882 1.28785 0.86673 0.78127 0.78418 0.84855 1.20333 1.21316 1.20343 1.22005 0.99910 1.01211 0.92853 1.22069 0.93356 0.94282 0.92303 0.91288 0.89892 0.91209 0.90637 0.90675 0.82237 0.90175 0.92062 0.87652 0.94147 0.95430 0.92876 0.92019 0.92685 0.91851 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 10.29 37.16 0.38 -0.35 16 2 C 0.05 0.27 6.84 37.16 0.25 0.52 16 3 O -0.31 -2.96 9.50 -14.97 -0.14 -3.11 16 4 C 0.19 1.98 9.99 30.04 0.30 2.28 16 5 C -0.19 -2.68 5.21 -105.11 -0.55 -3.23 16 6 C 0.27 4.26 11.28 -22.47 -0.25 4.00 16 7 N -0.43 -7.34 18.48 41.84 0.77 -6.56 16 8 C 0.58 9.94 7.33 -12.70 -0.09 9.84 16 9 O -0.55 -10.39 16.21 5.22 0.08 -10.31 16 10 N -0.59 -10.83 2.98 -174.45 -0.52 -11.35 16 11 C 0.11 2.17 6.41 -3.93 -0.03 2.14 16 12 C -0.12 -2.80 5.14 -26.83 -0.14 -2.94 16 13 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 14 C -0.51 -13.69 8.56 -34.44 -0.29 -13.99 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.71 11.30 55.43 0.63 -24.09 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.12 -2.45 5.30 -26.61 -0.14 -2.59 16 23 C 0.10 1.85 5.52 -3.71 -0.02 1.82 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.16 1.22 7.91 -52.49 -0.41 0.81 16 30 H 0.08 1.56 7.00 -51.93 -0.36 1.19 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.11 2.67 6.03 -51.93 -0.31 2.36 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.72 8.14 -51.94 -0.42 0.30 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.17 4.54 -51.93 -0.24 0.94 16 LS Contribution 329.66 15.07 4.97 4.97 Total: -1.00 -31.18 329.66 -5.61 -36.79 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.52 Total: -2.31 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.86 Total: 0.06 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.88 Total: -42.00 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.06 Total: -13.41 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.18 -5.61 -36.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490844147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.064 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds