Wall clock time and date at job start Tue Mar 31 2020 00:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47138 * 2 1 4 4 C 1.34381 * 116.99987 * 179.97438 * 3 2 1 5 5 C 1.36325 * 120.00205 * 180.02562 * 4 3 2 6 6 C 1.43200 * 119.99608 * 0.02562 * 5 4 3 7 7 N 4.90256 * 99.07126 * 0.02562 * 2 1 3 8 8 C 1.47012 * 120.00093 * 179.97438 * 5 4 3 9 9 O 1.21663 * 119.99657 * 36.65072 * 8 5 4 10 10 N 1.34780 * 120.00413 * 216.63974 * 8 5 4 11 11 C 1.46917 * 120.63114 * 185.86190 * 10 8 5 12 12 C 1.52770 * 109.00568 * 233.58465 * 11 10 8 13 13 C 1.53043 * 109.38194 * 305.58617 * 12 11 10 14 14 C 1.50701 * 109.44457 * 181.25087 * 13 12 11 15 15 H 1.08003 * 119.99691 * 239.93757 * 14 13 12 16 16 C 1.37878 * 119.99793 * 59.94842 * 14 13 12 17 17 N 1.31509 * 120.00123 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99869 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46980 * 59.99271 * 18 16 14 20 20 H 1.48497 * 109.47099 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46974 * 299.99732 * 18 16 14 22 22 C 1.53042 * 109.53380 * 61.24314 * 13 12 11 23 23 C 1.46927 * 120.62499 * 6.14224 * 10 8 5 24 24 H 1.09004 * 109.47260 * 59.99661 * 1 2 3 25 25 H 1.09002 * 109.47299 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46999 * 299.99449 * 1 2 3 27 27 H 1.08993 * 109.47172 * 120.00830 * 2 1 3 28 28 H 1.09002 * 109.46999 * 240.00551 * 2 1 3 29 29 H 1.08002 * 120.00190 * 0.02562 * 4 3 2 30 30 H 1.08996 * 109.59140 * 353.41964 * 11 10 8 31 31 H 1.09002 * 109.58858 * 113.84622 * 11 10 8 32 32 H 1.09003 * 109.56059 * 185.55221 * 12 11 10 33 33 H 1.08998 * 109.38511 * 65.51653 * 12 11 10 34 34 H 1.08987 * 109.46291 * 301.22098 * 13 12 11 35 35 H 0.96997 * 119.99898 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.49457 * 178.68038 * 22 13 12 37 37 H 1.09000 * 109.52631 * 58.60253 * 22 13 12 38 38 H 1.09001 * 109.58588 * 246.15620 * 23 10 8 39 39 H 1.08995 * 109.59304 * 6.43530 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3462 1.5450 0.0005 5 6 3.8673 2.8047 0.0011 6 6 2.9950 3.9403 0.0017 7 7 2.3029 4.8412 0.0022 8 6 5.3248 2.9973 0.0023 9 8 6.0390 2.2390 -0.6263 10 7 5.8697 4.0140 0.6994 11 6 7.3084 4.2975 0.6085 12 6 7.8992 4.3292 2.0170 13 6 7.1148 5.3252 2.8744 14 6 7.7156 5.3803 4.2554 15 1 7.1160 5.1225 5.1158 16 6 9.0307 5.7602 4.4203 17 7 9.7609 6.0739 3.3725 18 14 9.7753 5.8293 6.1321 19 1 9.7098 4.4828 6.7551 20 1 11.1926 6.2625 6.0384 21 1 9.0154 6.7969 6.9637 22 6 5.6544 4.8780 2.9712 23 6 5.0372 4.8559 1.5693 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5139 0.8898 28 1 1.8933 -0.5138 -0.8901 29 1 4.0041 0.6885 0.0005 30 1 7.7985 3.5176 0.0257 31 1 7.4607 5.2647 0.1295 32 1 8.9441 4.6356 1.9676 33 1 7.8319 3.3356 2.4600 34 1 7.1624 6.3137 2.4179 35 1 10.6860 6.3415 3.4886 36 1 5.1016 5.5748 3.6012 37 1 5.6072 3.8792 3.4053 38 1 5.0005 5.8696 1.1702 39 1 4.0286 4.4458 1.6183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490844147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:19 Heat of formation + Delta-G solvation = -51.823964 kcal Electronic energy + Delta-G solvation = -21446.701834 eV Core-core repulsion = 18161.410326 eV Total energy + Delta-G solvation = -3285.291508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.40343 -40.23889 -38.42382 -37.68076 -35.32352 -33.94777 -32.91927 -32.17948 -31.33047 -28.09531 -25.49089 -24.59451 -24.04255 -23.62640 -22.09127 -20.65044 -19.51744 -18.43612 -17.67436 -17.56150 -17.11247 -16.91229 -16.48916 -16.14190 -15.24155 -15.09616 -14.66368 -14.64065 -14.51731 -14.35147 -13.93352 -13.84004 -13.76616 -13.42672 -13.30092 -13.15548 -12.98035 -12.77096 -12.46679 -12.40953 -12.17789 -11.93203 -11.89862 -11.42959 -11.23930 -10.90920 -10.77859 -10.38995 -9.86927 -9.52571 -8.05815 -6.19921 0.00660 1.44655 1.44951 1.49100 1.52456 1.52777 1.85550 2.27697 2.44183 2.47155 3.00654 3.20798 3.69009 3.83615 3.99648 4.11690 4.14464 4.24952 4.35835 4.43123 4.49339 4.57297 4.67417 4.73065 4.84221 4.88563 4.94901 4.96517 5.17443 5.20825 5.26823 5.44014 5.50816 5.67864 5.96666 5.98617 6.13134 6.39267 6.43570 6.52886 6.90445 7.07502 7.48069 8.97772 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027067 B = 0.003808 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.224055 B = 7351.755655 C = 7511.551316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.040 3.960 3 O -0.325 6.325 4 C 0.250 3.750 5 C -0.239 4.239 6 C 0.287 3.713 7 N -0.470 5.470 8 C 0.589 3.411 9 O -0.570 6.570 10 N -0.599 5.599 11 C 0.121 3.879 12 C -0.111 4.111 13 C 0.045 3.955 14 C -0.534 4.534 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 0.952 3.048 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.113 4.113 23 C 0.116 3.884 24 H 0.059 0.941 25 H 0.107 0.893 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.195 0.805 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.032 0.968 34 H -0.002 1.002 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.220 -14.824 -6.451 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.032 4.032 3 O -0.233 6.233 4 C 0.176 3.824 5 C -0.248 4.248 6 C -0.025 4.025 7 N -0.149 5.149 8 C 0.378 3.622 9 O -0.452 6.452 10 N -0.330 5.330 11 C -0.001 4.001 12 C -0.149 4.149 13 C 0.027 3.973 14 C -0.572 4.572 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.554 5.554 18 Si 0.778 3.222 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.151 4.151 23 C -0.007 4.007 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.212 0.788 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.016 0.984 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.926 -13.647 -6.821 22.054 hybrid contribution 1.097 0.163 0.931 1.448 sum -14.829 -13.484 -5.890 20.890 Atomic orbital electron populations 1.21870 0.92100 1.04503 1.03009 1.23962 0.96875 0.77286 1.05085 1.86223 1.19720 1.34674 1.82681 1.23689 0.84313 0.96205 0.78232 1.16830 0.89838 0.88330 1.29835 1.25253 0.92503 0.92748 0.91989 1.81235 1.10548 1.10529 1.12587 1.17426 0.86281 0.80056 0.78394 1.90767 1.62884 1.45742 1.45808 1.48088 1.09521 1.31306 1.44063 1.21569 0.79187 1.00613 0.98695 1.21690 1.02091 0.98325 0.92838 1.18605 0.90866 0.93438 0.94426 1.21525 0.96754 1.45339 0.93558 0.92858 1.25703 0.97742 0.94922 1.00088 1.69967 1.08530 1.46433 1.30520 0.85710 0.77236 0.78582 0.80691 1.19670 1.21133 1.19879 1.21858 0.97506 1.01185 0.94567 1.21914 0.93904 0.94211 0.90721 0.92216 0.87437 0.92277 0.88317 0.88241 0.78821 0.89715 0.92363 0.90525 0.94906 0.98397 0.92988 0.91643 0.92370 0.92485 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 10.29 71.98 0.74 -0.27 16 2 C 0.04 0.26 6.84 71.98 0.49 0.75 16 3 O -0.33 -5.01 9.50 -76.49 -0.73 -5.73 16 4 C 0.25 4.24 9.99 67.37 0.67 4.91 16 5 C -0.24 -6.24 5.21 -20.18 -0.11 -6.35 16 6 C 0.29 8.66 11.28 88.33 1.00 9.66 16 7 N -0.47 -15.85 18.48 19.00 0.35 -15.50 16 8 C 0.59 19.33 7.33 86.54 0.63 19.97 16 9 O -0.57 -20.60 16.21 -4.23 -0.07 -20.67 16 10 N -0.60 -21.78 2.98 -824.07 -2.45 -24.23 16 11 C 0.12 4.86 6.41 86.22 0.55 5.41 16 12 C -0.11 -5.18 5.14 30.53 0.16 -5.03 16 13 C 0.05 2.22 2.07 -11.51 -0.02 2.19 16 14 C -0.53 -28.87 8.56 25.60 0.22 -28.66 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 16 C 0.01 0.78 5.30 84.66 0.45 1.22 16 17 N -0.92 -51.98 11.30 21.45 0.24 -51.73 16 18 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C -0.11 -4.55 5.30 30.67 0.16 -4.38 16 23 C 0.12 4.11 5.52 86.36 0.48 4.59 16 24 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 25 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.20 1.97 7.91 -2.91 -0.02 1.94 16 30 H 0.08 3.30 7.00 -2.39 -0.02 3.29 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.08 4.04 6.03 -2.39 -0.01 4.02 16 33 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 35 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.09 2.88 4.54 -2.39 -0.01 2.87 16 Total: -1.00 -68.75 329.66 5.84 -62.91 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.05 Total: 5.81 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.43 Total: 4.02 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -1.86 Total: -91.47 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.80 Total: -26.41 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -68.75 5.84 -62.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490844147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.085 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds