Wall clock time and date at job start Tue Mar 31 2020 01:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99666 * 2 1 4 4 C 1.52997 * 109.47007 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47280 * 64.99933 * 4 3 2 6 6 C 1.36818 * 120.00153 * 270.00133 * 5 4 3 7 7 H 1.08011 * 119.99352 * 42.83766 * 6 5 4 8 8 C 1.39033 * 120.00352 * 222.84311 * 6 5 4 9 9 N 1.31378 * 119.99560 * 15.55732 * 8 6 5 10 10 Si 1.86795 * 120.00227 * 195.55423 * 8 6 5 11 11 H 1.48500 * 109.46951 * 89.99746 * 10 8 6 12 12 H 1.48496 * 109.47512 * 209.99975 * 10 8 6 13 13 H 1.48502 * 109.47171 * 330.00152 * 10 8 6 14 14 C 1.34774 * 119.99959 * 89.99659 * 5 4 3 15 15 O 1.21808 * 119.99544 * 175.30664 * 14 5 4 16 16 C 1.41530 * 120.00184 * 355.31907 * 14 5 4 17 17 C 1.35321 * 119.99787 * 174.65013 * 16 14 5 18 18 C 1.46735 * 119.99885 * 177.81514 * 17 16 14 19 19 C 1.46797 * 127.03258 * 355.50644 * 18 17 16 20 20 C 1.34443 * 106.41871 * 179.83140 * 19 18 17 21 21 N 1.36442 * 109.14794 * 0.43151 * 20 19 18 22 22 C 1.46507 * 124.81525 * 179.73377 * 21 20 19 23 23 C 1.34849 * 110.36835 * 359.71479 * 21 20 19 24 24 H 1.09001 * 109.47062 * 299.99766 * 1 2 3 25 25 H 1.09000 * 109.47815 * 59.99974 * 1 2 3 26 26 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47532 * 60.00328 * 3 2 1 28 28 H 1.09000 * 109.47039 * 299.99950 * 3 2 1 29 29 H 1.09003 * 109.46999 * 305.00018 * 4 3 2 30 30 H 1.08998 * 109.47657 * 184.99733 * 4 3 2 31 31 H 0.97004 * 119.99916 * 184.37039 * 9 8 6 32 32 H 1.07995 * 119.99565 * 354.36670 * 16 14 5 33 33 H 1.08001 * 120.00614 * 357.80848 * 17 16 14 34 34 H 1.07998 * 126.79358 * 359.97438 * 19 18 17 35 35 H 1.07994 * 125.42415 * 180.15590 * 20 19 18 36 36 H 1.09007 * 109.46721 * 269.97684 * 22 21 20 37 37 H 1.08992 * 109.47211 * 29.97757 * 22 21 20 38 38 H 1.08998 * 109.46944 * 149.98046 * 22 21 20 39 39 H 1.08000 * 125.93343 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0966 -0.7957 -1.3369 7 1 3.3365 -1.4329 -0.9094 8 6 5.1981 -1.3577 -1.9724 9 7 6.2593 -0.6236 -2.2193 10 14 5.1691 -3.1565 -2.4753 11 1 4.6256 -3.2769 -3.8520 12 1 6.5493 -3.7031 -2.4384 13 1 4.3093 -3.9195 -1.5352 14 6 4.2614 1.3338 -2.3218 15 8 4.7087 0.8266 -3.3349 16 6 4.0419 2.7309 -2.2673 17 6 4.4287 3.5173 -3.2984 18 6 4.1581 4.9591 -3.2631 19 6 3.4043 5.6924 -2.2389 20 6 3.4141 6.9840 -2.6118 21 7 4.1020 7.1063 -3.7838 22 6 4.3176 8.3663 -4.4995 23 6 4.5554 5.9029 -4.1896 24 1 -0.3633 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5683 0.8410 30 1 3.9785 2.1766 0.0889 31 1 7.0022 -0.9975 -2.7186 32 1 3.5616 3.1687 -1.4047 33 1 4.9366 3.0839 -4.1472 34 1 2.9365 5.2769 -1.3586 35 1 2.9477 7.7949 -2.0721 36 1 3.5014 8.5285 -5.2035 37 1 4.3503 9.1889 -3.7853 38 1 5.2616 8.3187 -5.0424 39 1 5.1299 5.7107 -5.0836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493342644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:32 Heat of formation + Delta-G solvation = 13.975521 kcal Electronic energy + Delta-G solvation = -21457.828759 eV Core-core repulsion = 18175.390531 eV Total energy + Delta-G solvation = -3282.438229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.74473 -38.45762 -37.02897 -34.21435 -33.48040 -31.97912 -30.86135 -28.66316 -28.65990 -26.39143 -25.80274 -24.55584 -22.68125 -21.63646 -20.10875 -19.40379 -17.94084 -16.89257 -16.37602 -16.07301 -15.58788 -15.25904 -14.95314 -14.61256 -14.18723 -13.94236 -13.80226 -13.09419 -12.91835 -12.77036 -12.62444 -12.42647 -12.27294 -11.93582 -11.63847 -11.33284 -11.24740 -11.00235 -10.72075 -10.62285 -10.42490 -10.33439 -10.02148 -9.44002 -9.11394 -8.57559 -8.27923 -7.79333 -7.19284 -6.83980 -5.82895 -3.58600 1.80926 2.56136 3.00463 3.47134 3.54081 3.54763 3.68242 4.36586 4.51452 4.61573 4.95123 4.99869 5.15115 5.17407 5.19367 5.23162 5.49968 5.60102 5.62467 5.68604 5.81409 5.87145 5.95551 5.98278 5.99954 6.10166 6.19845 6.29246 6.31061 6.71875 6.77087 7.01127 7.24393 7.38084 7.42533 7.54914 7.75319 7.92615 8.57669 9.30511 9.46823 9.92364 10.59439 11.21359 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.004841 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.159437 B = 5782.637075 C = 7074.480564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.047 3.953 4 C 0.107 3.893 5 N -0.442 5.442 6 C -0.323 4.323 7 H 0.086 0.914 8 C 0.059 3.941 9 N -0.822 5.822 10 Si 0.907 3.093 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.274 1.274 14 C 0.486 3.514 15 O -0.536 6.536 16 C -0.180 4.180 17 C -0.040 4.040 18 C -0.139 4.139 19 C -0.181 4.181 20 C -0.026 4.026 21 N -0.453 5.453 22 C 0.073 3.927 23 C 0.000 4.000 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.260 0.740 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 16.340 1.000 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.031 4.031 4 C -0.018 4.018 5 N -0.163 5.163 6 C -0.451 4.451 7 H 0.104 0.896 8 C -0.150 4.150 9 N -0.457 5.457 10 Si 0.734 3.266 11 H -0.207 1.207 12 H -0.216 1.216 13 H -0.199 1.199 14 C 0.278 3.722 15 O -0.416 6.416 16 C -0.202 4.202 17 C -0.062 4.062 18 C -0.146 4.146 19 C -0.205 4.205 20 C -0.153 4.153 21 N -0.130 5.130 22 C -0.069 4.069 23 C -0.131 4.131 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.393 16.205 0.307 17.423 hybrid contribution -0.260 -0.393 -0.182 0.505 sum -6.654 15.812 0.125 17.156 Atomic orbital electron populations 1.22657 0.82936 1.02010 0.98938 1.88098 1.17883 1.27530 1.95060 1.23194 0.96233 0.84829 0.98834 1.21532 0.90645 0.98536 0.91120 1.43173 1.60077 1.06231 1.06770 1.19201 1.04762 0.80599 1.40514 0.89640 1.25251 0.93905 0.98217 0.97676 1.69923 1.04367 1.36997 1.34398 0.86280 0.76799 0.84266 0.79210 1.20703 1.21593 1.19866 1.16701 0.84780 0.86160 0.84549 1.90648 1.44878 1.74996 1.31109 1.22247 1.03538 0.95515 0.98931 1.21411 0.97109 0.88973 0.98688 1.19993 1.05033 0.92893 0.96655 1.22061 1.05179 0.92398 1.00907 1.21567 1.04732 0.98547 0.90468 1.43430 1.42893 1.07088 1.19551 1.21994 1.02774 0.84599 0.97520 1.22163 1.05578 0.83771 1.01589 0.95090 0.94701 0.90277 0.94158 0.93654 0.90562 0.90920 0.93006 0.87797 0.85840 0.84297 0.82477 0.91237 0.90137 0.90026 0.81752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.28 9.71 -35.23 -0.34 -7.62 16 3 C 0.05 0.85 6.15 37.16 0.23 1.08 16 4 C 0.11 2.22 5.38 -4.04 -0.02 2.20 16 5 N -0.44 -11.74 2.49 -118.08 -0.29 -12.04 16 6 C -0.32 -9.43 8.91 -15.03 -0.13 -9.56 16 7 H 0.09 2.48 7.28 -52.48 -0.38 2.09 16 8 C 0.06 1.76 4.48 -17.45 -0.08 1.68 16 9 N -0.82 -25.75 11.22 55.50 0.62 -25.13 16 10 Si 0.91 23.10 29.58 -169.99 -5.03 18.07 16 11 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.49 13.28 6.81 -15.01 -0.10 13.18 16 15 O -0.54 -16.88 13.35 5.09 0.07 -16.81 16 16 C -0.18 -3.97 8.36 -39.37 -0.33 -4.30 16 17 C -0.04 -0.82 9.65 -37.19 -0.36 -1.18 16 18 C -0.14 -2.34 6.26 -103.06 -0.64 -2.99 16 19 C -0.18 -2.65 10.45 -37.46 -0.39 -3.04 16 20 C -0.03 -0.31 11.31 -16.84 -0.19 -0.50 16 21 N -0.45 -5.23 3.09 -124.09 -0.38 -5.61 16 22 C 0.07 0.49 11.03 59.85 0.66 1.15 16 23 C 0.00 0.00 11.39 -16.28 -0.19 -0.19 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 29 H 0.08 1.60 8.04 -51.93 -0.42 1.18 16 30 H 0.07 1.34 6.39 -51.93 -0.33 1.01 16 31 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 32 H 0.10 1.97 5.13 -52.49 -0.27 1.70 16 33 H 0.12 2.69 7.47 -52.49 -0.39 2.30 16 34 H 0.14 1.87 7.55 -52.49 -0.40 1.47 16 35 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 38 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 39 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -37.81 333.04 -6.31 -44.12 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.53 Total: 0.89 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.43 Total: -0.88 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.05 Total: -42.78 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.27 Total: -24.43 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.03 Total: 18.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.81 -6.31 -44.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493342644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.092 kcal (2) G-P(sol) polarization free energy of solvation -37.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds