Wall clock time and date at job start Tue Mar 31 2020 01:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99666 * 2 1 4 4 C 1.52997 * 109.47007 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47280 * 64.99933 * 4 3 2 6 6 C 1.36818 * 120.00153 * 270.00133 * 5 4 3 7 7 H 1.08011 * 119.99352 * 42.83766 * 6 5 4 8 8 C 1.39033 * 120.00352 * 222.84311 * 6 5 4 9 9 N 1.31378 * 119.99560 * 15.55732 * 8 6 5 10 10 Si 1.86795 * 120.00227 * 195.55423 * 8 6 5 11 11 H 1.48500 * 109.46951 * 89.99746 * 10 8 6 12 12 H 1.48496 * 109.47512 * 209.99975 * 10 8 6 13 13 H 1.48502 * 109.47171 * 330.00152 * 10 8 6 14 14 C 1.34774 * 119.99959 * 89.99659 * 5 4 3 15 15 O 1.21808 * 119.99544 * 175.30664 * 14 5 4 16 16 C 1.41530 * 120.00184 * 355.31907 * 14 5 4 17 17 C 1.35321 * 119.99787 * 174.65013 * 16 14 5 18 18 C 1.46735 * 119.99885 * 177.81514 * 17 16 14 19 19 C 1.46797 * 127.03258 * 355.50644 * 18 17 16 20 20 C 1.34443 * 106.41871 * 179.83140 * 19 18 17 21 21 N 1.36442 * 109.14794 * 0.43151 * 20 19 18 22 22 C 1.46507 * 124.81525 * 179.73377 * 21 20 19 23 23 C 1.34849 * 110.36835 * 359.71479 * 21 20 19 24 24 H 1.09001 * 109.47062 * 299.99766 * 1 2 3 25 25 H 1.09000 * 109.47815 * 59.99974 * 1 2 3 26 26 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47532 * 60.00328 * 3 2 1 28 28 H 1.09000 * 109.47039 * 299.99950 * 3 2 1 29 29 H 1.09003 * 109.46999 * 305.00018 * 4 3 2 30 30 H 1.08998 * 109.47657 * 184.99733 * 4 3 2 31 31 H 0.97004 * 119.99916 * 184.37039 * 9 8 6 32 32 H 1.07995 * 119.99565 * 354.36670 * 16 14 5 33 33 H 1.08001 * 120.00614 * 357.80848 * 17 16 14 34 34 H 1.07998 * 126.79358 * 359.97438 * 19 18 17 35 35 H 1.07994 * 125.42415 * 180.15590 * 20 19 18 36 36 H 1.09007 * 109.46721 * 269.97684 * 22 21 20 37 37 H 1.08992 * 109.47211 * 29.97757 * 22 21 20 38 38 H 1.08998 * 109.46944 * 149.98046 * 22 21 20 39 39 H 1.08000 * 125.93343 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0966 -0.7957 -1.3369 7 1 3.3365 -1.4329 -0.9094 8 6 5.1981 -1.3577 -1.9724 9 7 6.2593 -0.6236 -2.2193 10 14 5.1691 -3.1565 -2.4753 11 1 4.6256 -3.2769 -3.8520 12 1 6.5493 -3.7031 -2.4384 13 1 4.3093 -3.9195 -1.5352 14 6 4.2614 1.3338 -2.3218 15 8 4.7087 0.8266 -3.3349 16 6 4.0419 2.7309 -2.2673 17 6 4.4287 3.5173 -3.2984 18 6 4.1581 4.9591 -3.2631 19 6 3.4043 5.6924 -2.2389 20 6 3.4141 6.9840 -2.6118 21 7 4.1020 7.1063 -3.7838 22 6 4.3176 8.3663 -4.4995 23 6 4.5554 5.9029 -4.1896 24 1 -0.3633 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5683 0.8410 30 1 3.9785 2.1766 0.0889 31 1 7.0022 -0.9975 -2.7186 32 1 3.5616 3.1687 -1.4047 33 1 4.9366 3.0839 -4.1472 34 1 2.9365 5.2769 -1.3586 35 1 2.9477 7.7949 -2.0721 36 1 3.5014 8.5285 -5.2035 37 1 4.3503 9.1889 -3.7853 38 1 5.2616 8.3187 -5.0424 39 1 5.1299 5.7107 -5.0836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493342644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:31 Heat of formation + Delta-G solvation = -11.650600 kcal Electronic energy + Delta-G solvation = -21458.939991 eV Core-core repulsion = 18175.390531 eV Total energy + Delta-G solvation = -3283.549461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.75927 -40.35833 -38.53749 -36.05145 -34.99590 -33.88505 -32.18851 -30.33718 -29.81541 -27.69737 -27.03754 -26.21042 -24.29459 -23.19342 -21.33814 -20.73377 -19.48917 -18.55881 -17.90789 -17.55976 -17.14416 -16.53765 -16.34849 -16.03797 -15.80641 -15.71669 -14.96763 -14.75689 -14.46187 -14.09514 -13.72516 -13.55265 -13.32350 -13.18958 -13.04774 -12.93262 -12.78811 -12.77176 -12.64090 -12.45135 -12.09672 -12.03388 -11.87689 -10.91868 -10.75413 -10.43339 -9.92576 -9.27847 -8.98087 -8.53223 -8.03284 -5.84150 0.31897 1.40012 1.47129 1.53516 1.55461 2.16360 2.29488 2.44481 3.02242 3.15976 3.41871 3.47266 4.02484 4.12802 4.17499 4.30060 4.33121 4.40907 4.50142 4.51751 4.58304 4.61573 4.65483 4.69288 4.74548 4.77637 4.88605 4.91904 5.11022 5.16872 5.23827 5.62913 5.72694 5.76657 6.03269 6.27176 6.39393 6.45927 6.54264 7.15030 7.38361 7.83308 8.52893 9.00268 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.004841 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.159437 B = 5782.637075 C = 7074.480564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.056 3.944 4 C 0.102 3.898 5 N -0.458 5.458 6 C -0.339 4.339 7 H 0.081 0.919 8 C 0.006 3.994 9 N -0.864 5.864 10 Si 0.968 3.032 11 H -0.291 1.291 12 H -0.282 1.282 13 H -0.255 1.255 14 C 0.480 3.520 15 O -0.596 6.596 16 C -0.218 4.218 17 C -0.003 4.003 18 C -0.195 4.195 19 C -0.201 4.201 20 C -0.011 4.011 21 N -0.447 5.447 22 C 0.064 3.936 23 C 0.018 3.982 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.254 0.746 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.199 0.801 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 19.576 1.565 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.022 4.022 4 C -0.021 4.021 5 N -0.178 5.178 6 C -0.467 4.467 7 H 0.099 0.901 8 C -0.199 4.199 9 N -0.500 5.500 10 Si 0.794 3.206 11 H -0.218 1.218 12 H -0.208 1.208 13 H -0.179 1.179 14 C 0.274 3.726 15 O -0.481 6.481 16 C -0.240 4.240 17 C -0.025 4.025 18 C -0.202 4.202 19 C -0.225 4.225 20 C -0.138 4.138 21 N -0.121 5.121 22 C -0.076 4.076 23 C -0.116 4.116 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.152 0.848 33 H 0.115 0.885 34 H 0.163 0.837 35 H 0.215 0.785 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.946 19.480 0.926 21.058 hybrid contribution 0.140 -1.077 -0.452 1.176 sum -7.807 18.403 0.474 19.996 Atomic orbital electron populations 1.22855 0.80474 1.03140 1.00440 1.88029 1.20703 1.28673 1.95409 1.23074 0.93764 0.84684 1.00671 1.21756 0.93162 0.98954 0.88245 1.43366 1.60190 1.05672 1.08595 1.19364 1.04412 0.82262 1.40691 0.90144 1.26112 0.93650 1.02326 0.97813 1.70048 1.05045 1.38871 1.36027 0.85329 0.77285 0.79714 0.78304 1.21833 1.20751 1.17862 1.17495 0.83084 0.88187 0.83860 1.90589 1.47692 1.76538 1.33275 1.21950 1.07747 0.92881 1.01408 1.21491 0.93385 0.91255 0.96353 1.19921 1.09031 0.91383 0.99868 1.22255 1.05736 0.93462 1.01051 1.22142 1.03090 0.98553 0.90062 1.43839 1.41055 1.07841 1.19357 1.22390 1.04170 0.82766 0.98301 1.22461 1.03841 0.84329 1.01007 0.92129 0.94493 0.89504 0.89679 0.94093 0.91297 0.88761 0.93720 0.84834 0.88510 0.83738 0.78452 0.89640 0.87644 0.88722 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.41 -15.98 9.71 -148.98 -1.45 -17.42 16 3 C 0.06 1.93 6.15 71.98 0.44 2.37 16 4 C 0.10 4.30 5.38 86.38 0.47 4.76 16 5 N -0.46 -25.28 2.49 -645.66 -1.61 -26.89 16 6 C -0.34 -20.58 8.91 84.11 0.75 -19.83 16 7 H 0.08 4.83 7.28 -2.91 -0.02 4.81 16 8 C 0.01 0.38 4.48 84.95 0.38 0.76 16 9 N -0.86 -56.90 11.22 21.68 0.24 -56.66 16 10 Si 0.97 49.34 29.58 68.60 2.03 51.37 16 11 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 12 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.25 -12.02 7.11 99.48 0.71 -11.31 16 14 C 0.48 27.51 6.81 85.05 0.58 28.09 16 15 O -0.60 -39.90 13.35 -4.69 -0.06 -39.96 16 16 C -0.22 -9.90 8.36 22.41 0.19 -9.72 16 17 C 0.00 -0.13 9.65 23.82 0.23 0.10 16 18 C -0.20 -6.38 6.26 -18.85 -0.12 -6.50 16 19 C -0.20 -5.41 10.45 23.64 0.25 -5.16 16 20 C -0.01 -0.22 11.31 83.11 0.94 0.73 16 21 N -0.45 -8.46 3.09 -546.51 -1.69 -10.15 16 22 C 0.06 0.54 11.03 127.77 1.41 1.95 16 23 C 0.02 0.45 11.39 84.20 0.96 1.41 16 24 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.04 1.45 7.83 -2.39 -0.02 1.43 16 29 H 0.07 2.93 8.04 -2.39 -0.02 2.91 16 30 H 0.09 3.46 6.39 -2.39 -0.02 3.44 16 31 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 32 H 0.13 5.07 5.13 -2.91 -0.01 5.06 16 33 H 0.10 4.50 7.47 -2.91 -0.02 4.47 16 34 H 0.14 3.57 7.55 -2.91 -0.02 3.55 16 35 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.10 0.44 8.13 -2.39 -0.02 0.42 16 38 H 0.09 0.61 8.13 -2.39 -0.02 0.59 16 39 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -88.62 333.04 6.22 -82.40 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.03 Total: 16.35 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 7.72 Total: 0.96 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -3.05 Total: -93.69 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -1.51 Total: -57.38 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.03 Total: 51.37 kcal Total: -88.62 6.22 -82.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493342644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.745 kcal (2) G-P(sol) polarization free energy of solvation -88.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds