Wall clock time and date at job start Tue Mar 31 2020 01:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34640 * 116.99900 * 2 1 4 4 O 1.21512 * 120.00132 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99808 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00053 * 0.02562 * 5 3 2 7 7 C 1.46502 * 119.99729 * 180.02562 * 5 3 2 8 8 C 1.50697 * 109.47332 * 269.99684 * 7 5 3 9 9 C 1.38292 * 119.92114 * 89.99949 * 8 7 5 10 10 C 1.38103 * 120.06781 * 179.97438 * 9 8 7 11 11 C 1.38907 * 119.93251 * 359.97438 * 10 9 8 12 12 N 1.39668 * 120.07688 * 179.97438 * 11 10 9 13 13 C 1.46506 * 120.00181 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47289 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99399 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00144 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46762 * 60.00562 * 18 16 14 20 20 H 1.48506 * 109.46725 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00217 * 18 16 14 22 22 C 1.38907 * 119.84667 * 0.25939 * 11 10 9 23 23 C 1.38108 * 119.92754 * 359.48722 * 22 11 10 24 24 H 1.08999 * 109.47577 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47371 * 299.99999 * 1 2 3 26 26 H 1.09005 * 109.47087 * 59.99999 * 1 2 3 27 27 H 1.09005 * 109.47049 * 270.00204 * 6 5 3 28 28 H 1.08996 * 109.47149 * 29.99874 * 6 5 3 29 29 H 1.09001 * 109.47175 * 150.00331 * 6 5 3 30 30 H 1.09008 * 109.47024 * 149.99899 * 7 5 3 31 31 H 1.08997 * 109.47471 * 30.00164 * 7 5 3 32 32 H 1.07994 * 119.96476 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.03201 * 179.97438 * 10 9 8 34 34 H 0.97001 * 120.00568 * 0.02562 * 12 11 10 35 35 H 1.09001 * 109.47060 * 300.00571 * 13 12 11 36 36 H 1.09004 * 109.47073 * 60.00060 * 13 12 11 37 37 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.03686 * 179.72396 * 22 11 10 39 39 H 1.07998 * 119.96672 * 180.25929 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.2070 0.0416 0.0005 7 6 4.0742 2.5755 0.0011 8 6 4.3028 3.0235 -1.4195 9 6 3.3395 3.7726 -2.0701 10 6 3.5462 4.1852 -3.3718 11 6 4.7233 3.8474 -4.0273 12 7 4.9352 4.2625 -5.3439 13 6 6.1770 3.9048 -6.0340 14 6 6.1567 4.4707 -7.4306 15 1 5.3041 5.0402 -7.7700 16 6 7.2268 4.2623 -8.2745 17 7 8.2652 3.5692 -7.8609 18 14 7.2012 4.9631 -10.0059 19 1 7.0793 6.4416 -9.9396 20 1 8.4601 4.6005 -10.7053 21 1 6.0438 4.4037 -10.7493 22 6 5.6866 3.0906 -3.3725 23 6 5.4760 2.6857 -2.0690 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.4045 -0.2634 1.0282 28 1 3.6587 -0.7477 -0.5137 29 1 5.1515 0.2217 -0.5129 30 1 5.0320 2.4951 0.5153 31 1 3.4460 3.3032 0.5149 32 1 2.4251 4.0360 -1.5594 33 1 2.7933 4.7699 -3.8794 34 1 4.2601 4.7877 -5.8015 35 1 7.0269 4.3150 -5.4885 36 1 6.2661 2.8195 -6.0826 37 1 9.0179 3.4222 -8.4548 38 1 6.6011 2.8225 -3.8808 39 1 6.2264 2.1009 -1.5578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496097652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:33 Heat of formation + Delta-G solvation = -54.048777 kcal Electronic energy + Delta-G solvation = -20924.378061 eV Core-core repulsion = 17638.990077 eV Total energy + Delta-G solvation = -3285.387983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54738 -38.94700 -37.02135 -35.72109 -34.78942 -32.69931 -30.47365 -30.23121 -27.95991 -27.48804 -26.34154 -24.67847 -23.06615 -21.75128 -20.88390 -19.97565 -18.04401 -17.32857 -17.13169 -16.76294 -15.85463 -15.26216 -15.08572 -14.93702 -14.44028 -14.01990 -13.92724 -13.26468 -13.21171 -12.97978 -12.97030 -12.80520 -12.48289 -12.16594 -12.04967 -11.77675 -11.64614 -11.35880 -10.95028 -10.90172 -10.83432 -10.58964 -10.39551 -10.12583 -9.43798 -9.39853 -8.81124 -8.56381 -8.38530 -6.56590 -6.23545 -4.28967 1.83076 2.00272 2.43856 2.82013 3.22521 3.27063 3.29109 3.89686 4.23304 4.46549 4.56213 5.00041 5.02304 5.08200 5.10618 5.13626 5.17316 5.33723 5.40768 5.49144 5.55878 5.66099 5.72599 5.94674 6.09298 6.24695 6.35617 6.37608 6.57562 6.90404 6.96886 7.10269 7.12372 7.30598 7.39286 7.45754 7.64565 7.92066 8.25840 8.26643 8.63881 8.87167 9.37519 10.87032 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031524 B = 0.003090 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.996146 B = 9057.967511 C = 9227.027148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.374 6.374 3 C 0.647 3.353 4 O -0.571 6.571 5 N -0.591 5.591 6 C 0.083 3.917 7 C 0.185 3.815 8 C -0.206 4.206 9 C -0.042 4.042 10 C -0.222 4.222 11 C 0.241 3.759 12 N -0.728 5.728 13 C 0.251 3.749 14 C -0.541 4.541 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.208 4.208 23 C -0.052 4.052 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.391 0.609 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.267 0.733 38 H 0.124 0.876 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 -6.929 16.683 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.287 6.287 3 C 0.401 3.599 4 O -0.460 6.460 5 N -0.331 5.331 6 C -0.060 4.060 7 C 0.065 3.935 8 C -0.210 4.210 9 C -0.062 4.062 10 C -0.245 4.245 11 C 0.131 3.869 12 N -0.349 5.349 13 C 0.130 3.870 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.731 3.269 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.231 4.231 23 C -0.071 4.071 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.225 0.775 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.306 -6.779 16.484 20.107 hybrid contribution -0.243 0.503 -1.318 1.431 sum -9.549 -6.276 15.166 18.989 Atomic orbital electron populations 1.23145 0.74831 1.03176 1.02641 1.86235 1.23867 1.31465 1.87176 1.18114 0.83387 0.82009 0.76421 1.90965 1.64291 1.34849 1.55903 1.46889 1.01995 1.08537 1.75657 1.21762 0.96521 0.86035 1.01645 1.20238 0.96909 0.82057 0.94291 1.19581 0.97047 1.07294 0.97046 1.20720 0.97338 0.94629 0.93500 1.20539 0.98171 1.09364 0.96430 1.18133 0.92648 0.90645 0.85523 1.45582 1.22573 1.56784 1.09998 1.19114 0.80807 0.95751 0.91362 1.21167 1.03988 1.35272 0.97486 0.92039 1.24928 0.95031 0.94925 0.99052 1.69934 1.06922 1.39040 1.36788 0.86462 0.77508 0.79483 0.83431 1.20035 1.21002 1.20049 1.20701 1.00923 1.05631 0.95822 1.20645 0.95697 0.96953 0.93817 0.88244 0.92052 0.91885 0.92668 0.90692 0.90565 0.89631 0.89427 0.86488 0.86985 0.77541 0.96105 0.96159 0.92378 0.85791 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -4.49 9.39 -40.32 -0.38 -4.87 16 3 C 0.65 9.07 8.39 54.06 0.45 9.52 16 4 O -0.57 -9.39 15.23 -19.28 -0.29 -9.69 16 5 N -0.59 -7.22 2.86 -188.80 -0.54 -7.76 16 6 C 0.08 0.76 10.44 59.84 0.62 1.38 16 7 C 0.19 2.24 5.53 -5.19 -0.03 2.21 16 8 C -0.21 -3.07 5.46 -104.59 -0.57 -3.65 16 9 C -0.04 -0.70 9.69 -39.61 -0.38 -1.08 16 10 C -0.22 -3.92 9.90 -39.38 -0.39 -4.31 16 11 C 0.24 4.75 6.65 -83.79 -0.56 4.19 16 12 N -0.73 -15.69 5.73 -59.80 -0.34 -16.04 16 13 C 0.25 6.38 4.67 -5.19 -0.02 6.35 16 14 C -0.54 -14.69 9.28 -34.44 -0.32 -15.00 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 18 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.21 -3.90 9.31 -39.38 -0.37 -4.26 16 23 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.69 7.37 -51.93 -0.38 0.31 16 29 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.09 0.80 8.01 -51.92 -0.42 0.39 16 31 H 0.09 1.10 7.36 -51.93 -0.38 0.72 16 32 H 0.12 1.87 7.57 -52.49 -0.40 1.48 16 33 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 34 H 0.39 7.90 8.33 -40.82 -0.34 7.56 16 35 H 0.02 0.57 7.96 -51.93 -0.41 0.16 16 36 H 0.02 0.56 7.94 -51.93 -0.41 0.14 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.12 2.47 6.73 -52.48 -0.35 2.12 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -31.33 336.31 -7.33 -38.67 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.59 Total: 6.11 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.98 Total: -2.60 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.15 Total: -48.53 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.67 Total: -14.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.33 -7.33 -38.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496097652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.381 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds