Wall clock time and date at job start Tue Mar 31 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34640 * 116.99900 * 2 1 4 4 O 1.21512 * 120.00132 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99808 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00053 * 0.02562 * 5 3 2 7 7 C 1.46502 * 119.99729 * 180.02562 * 5 3 2 8 8 C 1.50697 * 109.47332 * 269.99684 * 7 5 3 9 9 C 1.38292 * 119.92114 * 89.99949 * 8 7 5 10 10 C 1.38103 * 120.06781 * 179.97438 * 9 8 7 11 11 C 1.38907 * 119.93251 * 359.97438 * 10 9 8 12 12 N 1.39668 * 120.07688 * 179.97438 * 11 10 9 13 13 C 1.46506 * 120.00181 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47289 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99399 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00144 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46762 * 60.00562 * 18 16 14 20 20 H 1.48506 * 109.46725 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00217 * 18 16 14 22 22 C 1.38907 * 119.84667 * 0.25939 * 11 10 9 23 23 C 1.38108 * 119.92754 * 359.48722 * 22 11 10 24 24 H 1.08999 * 109.47577 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47371 * 299.99999 * 1 2 3 26 26 H 1.09005 * 109.47087 * 59.99999 * 1 2 3 27 27 H 1.09005 * 109.47049 * 270.00204 * 6 5 3 28 28 H 1.08996 * 109.47149 * 29.99874 * 6 5 3 29 29 H 1.09001 * 109.47175 * 150.00331 * 6 5 3 30 30 H 1.09008 * 109.47024 * 149.99899 * 7 5 3 31 31 H 1.08997 * 109.47471 * 30.00164 * 7 5 3 32 32 H 1.07994 * 119.96476 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.03201 * 179.97438 * 10 9 8 34 34 H 0.97001 * 120.00568 * 0.02562 * 12 11 10 35 35 H 1.09001 * 109.47060 * 300.00571 * 13 12 11 36 36 H 1.09004 * 109.47073 * 60.00060 * 13 12 11 37 37 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.03686 * 179.72396 * 22 11 10 39 39 H 1.07998 * 119.96672 * 180.25929 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.2070 0.0416 0.0005 7 6 4.0742 2.5755 0.0011 8 6 4.3028 3.0235 -1.4195 9 6 3.3395 3.7726 -2.0701 10 6 3.5462 4.1852 -3.3718 11 6 4.7233 3.8474 -4.0273 12 7 4.9352 4.2625 -5.3439 13 6 6.1770 3.9048 -6.0340 14 6 6.1567 4.4707 -7.4306 15 1 5.3041 5.0402 -7.7700 16 6 7.2268 4.2623 -8.2745 17 7 8.2652 3.5692 -7.8609 18 14 7.2012 4.9631 -10.0059 19 1 7.0793 6.4416 -9.9396 20 1 8.4601 4.6005 -10.7053 21 1 6.0438 4.4037 -10.7493 22 6 5.6866 3.0906 -3.3725 23 6 5.4760 2.6857 -2.0690 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.4045 -0.2634 1.0282 28 1 3.6587 -0.7477 -0.5137 29 1 5.1515 0.2217 -0.5129 30 1 5.0320 2.4951 0.5153 31 1 3.4460 3.3032 0.5149 32 1 2.4251 4.0360 -1.5594 33 1 2.7933 4.7699 -3.8794 34 1 4.2601 4.7877 -5.8015 35 1 7.0269 4.3150 -5.4885 36 1 6.2661 2.8195 -6.0826 37 1 9.0179 3.4222 -8.4548 38 1 6.6011 2.8225 -3.8808 39 1 6.2264 2.1009 -1.5578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496097652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:31 Heat of formation + Delta-G solvation = -73.625526 kcal Electronic energy + Delta-G solvation = -20925.226972 eV Core-core repulsion = 17638.990077 eV Total energy + Delta-G solvation = -3286.236895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55233 -40.30448 -38.07569 -36.93277 -36.23939 -34.62059 -31.89043 -31.59157 -29.22346 -28.56395 -27.51647 -25.95807 -24.78582 -23.20155 -22.14628 -21.19786 -19.14781 -18.98434 -18.15173 -17.81577 -17.46031 -16.99737 -16.40174 -16.02533 -15.81276 -15.09835 -15.04987 -14.96726 -14.60852 -14.35716 -14.21828 -13.94653 -13.74455 -13.43597 -13.21911 -12.95225 -12.88906 -12.75278 -12.68758 -12.47913 -12.15621 -11.75145 -11.73555 -11.57473 -11.45586 -11.04159 -10.54058 -9.78240 -9.76065 -8.32687 -8.15289 -6.46708 0.60345 0.61604 1.39366 1.39518 1.42412 1.50623 1.77849 2.32509 2.88281 2.93978 3.02486 3.20110 3.97898 4.06094 4.21208 4.30651 4.34873 4.37808 4.38543 4.59017 4.67747 4.69755 4.78813 4.83411 4.87852 5.00381 5.07597 5.22725 5.27655 5.28068 5.44932 5.47944 5.54385 5.58832 5.81117 5.85492 6.14405 6.31821 6.46087 6.73095 7.11438 7.25583 7.26887 8.78873 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031524 B = 0.003090 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.996146 B = 9057.967511 C = 9227.027148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.375 6.375 3 C 0.638 3.362 4 O -0.603 6.603 5 N -0.591 5.591 6 C 0.079 3.921 7 C 0.186 3.814 8 C -0.189 4.189 9 C -0.049 4.049 10 C -0.221 4.221 11 C 0.211 3.789 12 N -0.736 5.736 13 C 0.274 3.726 14 C -0.562 4.562 15 H 0.069 0.931 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.977 3.023 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.227 4.227 23 C -0.042 4.042 24 H 0.134 0.866 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.396 0.604 35 H -0.007 1.007 36 H -0.008 1.008 37 H 0.270 0.730 38 H 0.102 0.898 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.950 -7.529 17.770 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.289 6.289 3 C 0.392 3.608 4 O -0.495 6.495 5 N -0.330 5.330 6 C -0.063 4.063 7 C 0.065 3.935 8 C -0.192 4.192 9 C -0.068 4.068 10 C -0.244 4.244 11 C 0.104 3.896 12 N -0.362 5.362 13 C 0.151 3.849 14 C -0.600 4.600 15 H 0.087 0.913 16 C -0.189 4.189 17 N -0.563 5.563 18 Si 0.801 3.199 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.250 4.250 23 C -0.061 4.061 24 H 0.152 0.848 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.230 0.770 35 H 0.011 0.989 36 H 0.009 0.991 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.826 -7.409 17.621 21.493 hybrid contribution -0.163 0.599 -1.467 1.593 sum -9.988 -6.810 16.154 20.177 Atomic orbital electron populations 1.23436 0.73251 1.05385 1.02306 1.86243 1.25437 1.30379 1.86818 1.18405 0.83979 0.82135 0.76232 1.90939 1.65161 1.35942 1.57432 1.46975 1.01722 1.09457 1.74839 1.21979 0.96314 0.84643 1.03377 1.20330 0.98685 0.82222 0.92227 1.19968 0.95854 1.05063 0.98331 1.20913 0.98019 0.94834 0.93041 1.20674 0.97555 1.09170 0.96960 1.18372 0.94005 0.92161 0.85041 1.45229 1.21599 1.58376 1.10956 1.18552 0.81711 0.93577 0.91039 1.21562 1.04493 1.35553 0.98372 0.91337 1.25903 0.94470 0.95056 1.03509 1.70061 1.07634 1.40137 1.38459 0.85323 0.77794 0.78947 0.77885 1.19133 1.20437 1.19175 1.20779 1.00227 1.06540 0.97427 1.20941 0.96594 0.96240 0.92364 0.84786 0.91825 0.92834 0.90285 0.90965 0.89473 0.85930 0.89766 0.85941 0.86016 0.77044 0.98928 0.99058 0.92112 0.87960 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 10.56 113.37 1.20 2.00 16 2 O -0.38 -8.34 9.39 -55.49 -0.52 -8.86 16 3 C 0.64 16.80 8.39 129.79 1.09 17.89 16 4 O -0.60 -19.22 15.23 19.80 0.30 -18.92 16 5 N -0.59 -12.82 2.86 -981.65 -2.80 -15.62 16 6 C 0.08 1.17 10.44 127.77 1.33 2.51 16 7 C 0.19 3.91 5.53 85.63 0.47 4.38 16 8 C -0.19 -5.23 5.46 -19.84 -0.11 -5.34 16 9 C -0.05 -1.55 9.69 22.25 0.22 -1.33 16 10 C -0.22 -7.78 9.90 22.40 0.22 -7.56 16 11 C 0.21 8.54 6.65 38.21 0.25 8.79 16 12 N -0.74 -33.10 5.73 -343.12 -1.96 -35.07 16 13 C 0.27 14.66 4.67 85.63 0.40 15.06 16 14 C -0.56 -31.27 9.28 25.60 0.24 -31.03 16 15 H 0.07 3.62 7.60 -2.91 -0.02 3.59 16 16 C 0.01 0.60 5.46 84.65 0.46 1.06 16 17 N -0.92 -54.20 13.29 21.45 0.28 -53.91 16 18 Si 0.98 42.86 29.54 68.60 2.03 44.89 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 C -0.23 -8.66 9.31 22.40 0.21 -8.45 16 23 C -0.04 -1.24 9.69 22.25 0.22 -1.02 16 24 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.07 1.14 7.37 -2.39 -0.02 1.12 16 29 H 0.09 1.12 8.07 -2.39 -0.02 1.10 16 30 H 0.12 1.73 8.01 -2.38 -0.02 1.71 16 31 H 0.08 1.90 7.36 -2.39 -0.02 1.88 16 32 H 0.12 3.79 7.57 -2.91 -0.02 3.77 16 33 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.40 16.53 8.33 -92.71 -0.77 15.76 16 35 H -0.01 -0.41 7.96 -2.39 -0.02 -0.43 16 36 H -0.01 -0.49 7.94 -2.38 -0.02 -0.50 16 37 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.10 4.32 6.73 -2.91 -0.02 4.30 16 39 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -69.39 336.31 3.80 -65.59 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.28 Total: 24.94 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 6.20 Total: -3.05 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.48 Total: -104.60 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.22 Total: -27.78 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -69.39 3.80 -65.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496097652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.033 kcal (2) G-P(sol) polarization free energy of solvation -69.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds