Wall clock time and date at job start Tue Mar 31 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00295 * 2 1 4 4 C 1.50707 * 109.46804 * 269.99915 * 3 2 1 5 5 C 1.38289 * 119.96864 * 269.97669 * 4 3 2 6 6 C 1.38240 * 120.10976 * 180.02562 * 5 4 3 7 7 C 1.38174 * 120.05836 * 359.67645 * 6 5 4 8 8 C 1.38709 * 119.93612 * 0.62068 * 7 6 5 9 9 O 1.35905 * 120.05346 * 179.68169 * 8 7 6 10 10 C 1.38116 * 119.97322 * 90.00002 * 4 3 2 11 11 C 1.34781 * 119.99927 * 179.97438 * 2 1 3 12 12 O 1.21583 * 119.99827 * 179.97438 * 11 2 1 13 13 N 1.34770 * 120.00153 * 0.02562 * 11 2 1 14 14 C 1.46498 * 120.00415 * 179.97438 * 13 11 2 15 15 C 1.52997 * 109.47186 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47010 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00118 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00264 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00036 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00339 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47099 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47082 * 120.00520 * 20 18 16 23 23 H 1.48502 * 109.47075 * 240.00396 * 20 18 16 24 24 H 1.09003 * 109.46791 * 90.00114 * 1 2 3 25 25 H 1.08998 * 109.47197 * 210.00876 * 1 2 3 26 26 H 1.09002 * 109.47165 * 330.00437 * 1 2 3 27 27 H 1.09002 * 109.47626 * 149.99579 * 3 2 1 28 28 H 1.09000 * 109.47168 * 29.99121 * 3 2 1 29 29 H 1.08002 * 119.94362 * 359.97438 * 5 4 3 30 30 H 1.08006 * 119.97243 * 179.97438 * 6 5 4 31 31 H 1.07996 * 120.03053 * 180.29714 * 7 6 5 32 32 H 0.96705 * 113.99576 * 269.72355 * 9 8 7 33 33 H 1.08003 * 120.03068 * 0.02562 * 10 4 3 34 34 H 0.97013 * 119.99861 * 359.97438 * 13 11 2 35 35 H 1.09004 * 109.46868 * 300.00045 * 14 13 11 36 36 H 1.09001 * 109.46969 * 59.99345 * 14 13 11 37 37 H 1.09004 * 109.47332 * 299.99857 * 15 14 13 38 38 H 1.09001 * 109.47623 * 59.99842 * 15 14 13 39 39 H 0.96996 * 120.00414 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 3.6015 1.3044 -2.0720 6 6 3.8351 1.7021 -3.3752 7 6 2.9137 2.4944 -4.0327 8 6 1.7595 2.9012 -3.3797 9 8 0.8547 3.6859 -4.0220 10 6 1.5276 2.5011 -2.0715 11 6 2.1389 -1.1672 0.0005 12 8 3.3547 -1.1672 0.0001 13 7 1.4650 -2.3344 0.0005 14 6 2.1974 -3.6031 0.0005 15 6 1.2032 -4.7660 0.0012 16 6 1.9566 -6.0711 0.0018 17 1 3.0367 -6.0712 0.0022 18 6 1.2673 -7.2652 0.0030 19 7 -0.0479 -7.2652 0.0030 20 14 2.2012 -8.8829 0.0030 21 1 3.6612 -8.6116 0.0023 22 1 1.8433 -9.6610 1.2162 23 1 1.8415 -9.6622 -1.2088 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5140 26 1 -0.3633 0.8900 0.5138 27 1 3.1500 1.1384 0.5139 28 1 1.6084 2.0284 0.5137 29 1 4.3210 0.6815 -1.5613 30 1 4.7365 1.3893 -3.8815 31 1 3.0943 2.8008 -5.0524 32 1 1.0093 4.6343 -3.9135 33 1 0.6278 2.8133 -1.5623 34 1 0.4949 -2.3344 0.0005 35 1 2.8241 -3.6609 -0.8895 36 1 2.8242 -3.6608 0.8905 37 1 0.5768 -4.7081 0.8914 38 1 0.5761 -4.7085 -0.8885 39 1 -0.5329 -8.1052 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543378276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:23 Heat of formation + Delta-G solvation = -73.203796 kcal Electronic energy + Delta-G solvation = -20934.335353 eV Core-core repulsion = 17648.116746 eV Total energy + Delta-G solvation = -3286.218607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.37406 -40.46394 -37.94756 -36.72231 -36.33591 -34.83531 -32.80420 -31.29180 -30.72183 -28.25148 -27.34033 -25.91714 -23.53885 -23.10379 -22.49715 -21.01563 -19.12288 -18.95271 -18.48569 -17.43520 -17.28576 -16.83732 -16.62140 -16.45921 -16.05804 -15.52008 -15.26541 -14.92833 -14.72025 -14.28223 -14.22617 -13.79642 -13.49391 -13.34185 -13.16811 -13.02540 -12.94527 -12.61973 -12.51064 -12.29982 -12.24681 -11.65514 -11.49043 -11.45446 -11.15345 -10.60998 -10.14564 -9.88800 -9.62177 -9.47500 -8.24231 -6.34529 0.22341 0.34112 1.41185 1.41915 1.55274 1.76056 2.16090 2.40808 2.70627 3.10520 3.11650 3.29100 3.82680 3.90465 4.18792 4.23818 4.30323 4.40093 4.46887 4.51029 4.57171 4.62316 4.76502 4.85596 4.88514 4.92407 5.04354 5.29717 5.40472 5.45501 5.48404 5.53835 5.58339 5.64216 5.78636 5.88768 5.94036 6.16890 6.78563 6.88410 6.99578 7.34805 7.57846 8.88005 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.003149 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.778183 B = 8890.417555 C = 9050.447048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.626 5.626 3 C 0.171 3.829 4 C -0.096 4.096 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.150 4.150 8 C 0.095 3.905 9 O -0.508 6.508 10 C -0.130 4.130 11 C 0.696 3.304 12 O -0.630 6.630 13 N -0.736 5.736 14 C 0.161 3.839 15 C 0.025 3.975 16 C -0.545 4.545 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.410 0.590 33 H 0.149 0.851 34 H 0.404 0.596 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.009 0.991 38 H 0.006 0.994 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 24.591 -3.517 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.362 5.362 3 C 0.049 3.951 4 C -0.098 4.098 5 C -0.143 4.143 6 C -0.133 4.133 7 C -0.169 4.169 8 C 0.051 3.949 9 O -0.321 6.321 10 C -0.149 4.149 11 C 0.397 3.603 12 O -0.512 6.512 13 N -0.392 5.392 14 C 0.037 3.963 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.202 1.202 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.128 0.872 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.269 0.731 33 H 0.167 0.833 34 H 0.241 0.759 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.024 0.976 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.687 23.944 -3.661 24.232 hybrid contribution 0.121 -0.750 -0.023 0.760 sum 0.808 23.194 -3.684 23.499 Atomic orbital electron populations 1.21990 0.77583 1.04804 1.02549 1.47095 1.07620 1.03729 1.77763 1.20381 0.98492 0.84013 0.92211 1.20275 0.94376 0.97479 0.97675 1.21320 0.98133 0.99171 0.95676 1.21258 1.00003 0.97561 0.94430 1.21654 0.93617 1.00348 1.01270 1.18547 0.89223 0.96348 0.90821 1.84794 1.51100 1.22558 1.73665 1.21452 0.99817 0.99633 0.93978 1.16163 0.85109 0.81282 0.77731 1.90825 1.13329 1.86971 1.60077 1.45410 1.10407 1.04596 1.78776 1.21051 0.94601 0.81201 0.99448 1.19119 0.94211 0.91731 0.96224 1.21483 0.93581 0.91865 1.51447 0.92331 1.25876 0.95815 1.03100 0.94395 1.70063 1.07530 1.27946 1.51067 0.85382 0.78960 0.78700 0.77918 1.18977 1.20120 1.20223 0.92512 0.91202 0.87304 0.90523 0.85797 0.87161 0.84497 0.83996 0.73056 0.83324 0.75897 0.94169 0.93747 0.97270 0.97564 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 10.25 127.77 1.31 2.61 16 2 N -0.63 -16.10 2.86 -869.30 -2.48 -18.58 16 3 C 0.17 3.66 5.57 85.64 0.48 4.14 16 4 C -0.10 -2.18 5.46 -19.88 -0.11 -2.29 16 5 C -0.12 -3.24 9.70 22.28 0.22 -3.03 16 6 C -0.11 -2.57 10.04 22.25 0.22 -2.34 16 7 C -0.15 -2.98 9.99 22.37 0.22 -2.76 16 8 C 0.09 1.83 6.70 22.51 0.15 1.98 16 9 O -0.51 -7.98 13.50 -92.48 -1.25 -9.23 16 10 C -0.13 -2.44 9.64 22.36 0.22 -2.22 16 11 C 0.70 25.12 8.28 179.06 1.48 26.60 16 12 O -0.63 -27.25 15.44 -3.98 -0.06 -27.32 16 13 N -0.74 -27.39 5.42 -478.55 -2.59 -29.99 16 14 C 0.16 7.27 5.61 86.38 0.48 7.76 16 15 C 0.02 1.28 5.09 29.85 0.15 1.43 16 16 C -0.55 -30.99 9.11 25.60 0.23 -30.76 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.01 0.39 5.46 84.65 0.46 0.85 16 19 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 20 Si 0.97 44.08 29.54 68.60 2.03 46.10 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.28 6.36 -2.39 -0.02 1.27 16 26 H 0.11 1.15 7.89 -2.39 -0.02 1.13 16 27 H 0.08 1.93 7.36 -2.39 -0.02 1.91 16 28 H 0.12 1.60 7.84 -2.39 -0.02 1.58 16 29 H 0.11 3.35 7.57 -2.91 -0.02 3.33 16 30 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.41 2.08 9.06 -74.05 -0.67 1.40 16 33 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.40 13.09 6.20 -92.70 -0.58 12.51 16 35 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -74.05 335.50 1.27 -72.78 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.18 Total: 18.71 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.52 Total: 1.96 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -4.79 Total: -103.01 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.31 Total: -36.54 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -74.05 1.27 -72.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543378276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.420 kcal (2) G-P(sol) polarization free energy of solvation -74.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds