Wall clock time and date at job start Tue Mar 31 2020 00:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42902 * 109.47313 * 2 1 4 4 C 1.35971 * 117.00088 * 179.97438 * 3 2 1 5 5 C 1.38725 * 119.98394 * 359.72801 * 4 3 2 6 6 C 1.38093 * 120.01138 * 179.72558 * 5 4 3 7 7 C 1.38851 * 119.98510 * 0.57060 * 6 5 4 8 8 N 1.40104 * 120.01278 * 179.68339 * 7 6 5 9 9 C 1.34779 * 119.99680 * 213.31913 * 8 7 6 10 10 O 1.21288 * 119.99932 * 5.27189 * 9 8 7 11 11 C 1.50706 * 119.99821 * 185.27618 * 9 8 7 12 12 N 1.46896 * 109.46830 * 179.97438 * 11 9 8 13 13 C 1.46905 * 110.99792 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47089 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00416 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00282 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00309 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47144 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47087 * 120.00637 * 18 16 14 21 21 H 1.48506 * 109.47078 * 239.99833 * 18 16 14 22 22 C 1.38846 * 119.96857 * 359.70263 * 7 6 5 23 23 C 1.38085 * 119.98693 * 0.02562 * 22 7 6 24 24 H 1.09000 * 109.47371 * 300.00269 * 1 2 3 25 25 H 1.09001 * 109.46776 * 60.00071 * 1 2 3 26 26 H 1.08998 * 109.47378 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47371 * 239.99731 * 2 1 3 28 28 H 1.09005 * 109.47488 * 120.00072 * 2 1 3 29 29 H 1.07998 * 119.99413 * 359.97438 * 5 4 3 30 30 H 1.08004 * 120.00551 * 180.27206 * 6 5 4 31 31 H 0.97003 * 120.00371 * 33.31572 * 8 7 6 32 32 H 1.09002 * 109.47085 * 300.00050 * 11 9 8 33 33 H 1.08996 * 109.47081 * 59.99712 * 11 9 8 34 34 H 1.00899 * 111.00561 * 56.04668 * 12 11 9 35 35 H 1.09000 * 109.47237 * 299.99996 * 13 12 11 36 36 H 1.09000 * 109.47128 * 59.99633 * 13 12 11 37 37 H 0.96996 * 120.00323 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.00582 * 179.97438 * 22 7 6 39 39 H 1.07998 * 119.99197 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 0.0005 5 6 4.1990 0.4250 0.0068 6 6 5.5681 0.6052 0.0016 7 6 6.0992 1.8882 0.0021 8 7 7.4881 2.0717 0.0036 9 6 8.0277 3.1269 0.6453 10 8 7.3218 3.8637 1.3010 11 6 9.5082 3.3914 0.5481 12 7 9.8439 4.5894 1.3291 13 6 11.2825 4.8783 1.2578 14 6 11.5880 6.1113 2.0684 15 1 10.7931 6.6285 2.5852 16 6 12.8825 6.5787 2.1513 17 7 13.8506 5.9487 1.5224 18 14 13.2613 8.1068 3.1567 19 1 12.0079 8.6246 3.7615 20 1 14.2254 7.7647 4.2331 21 1 13.8520 9.1456 2.2750 22 6 5.2531 2.9891 0.0016 23 6 3.8842 2.8074 0.0011 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.7858 -0.5728 0.0116 30 1 6.2257 -0.2516 0.0020 31 1 8.0615 1.4393 -0.4572 32 1 10.0568 2.5354 0.9413 33 1 9.7813 3.5498 -0.4951 34 1 9.5417 4.4932 2.2869 35 1 11.8430 4.0328 1.6566 36 1 11.5684 5.0464 0.2195 37 1 14.7612 6.2776 1.5803 38 1 5.6655 3.9872 0.0025 39 1 3.2260 3.6637 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000551341471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:56 Heat of formation + Delta-G solvation = -70.810353 kcal Electronic energy + Delta-G solvation = -20203.220616 eV Core-core repulsion = 16917.105796 eV Total energy + Delta-G solvation = -3286.114820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64797 -40.60154 -38.49363 -36.75514 -35.47360 -34.46927 -32.67871 -31.90258 -30.52041 -29.06588 -26.63811 -25.09017 -23.70705 -23.30646 -22.74752 -21.27759 -19.34366 -18.98945 -18.34097 -17.93276 -17.04467 -16.93932 -16.75836 -16.43633 -15.88607 -15.52271 -14.90127 -14.77808 -14.61189 -14.36003 -14.27987 -14.24139 -13.79053 -13.33819 -13.27042 -13.19241 -13.01096 -12.68727 -12.64144 -12.62718 -12.08530 -11.91815 -11.70517 -11.40902 -10.98685 -10.76392 -10.66688 -10.01048 -9.16803 -8.70981 -8.23990 -6.33707 0.28835 0.32546 1.40902 1.41771 1.55934 1.57861 1.96705 2.30074 2.41025 2.78255 3.09650 3.60587 3.72192 3.84541 3.91218 4.09773 4.17641 4.27504 4.39264 4.40838 4.41663 4.43844 4.58020 4.73088 4.96974 4.99592 5.01263 5.04411 5.21120 5.24268 5.32007 5.33898 5.45495 5.59672 5.84708 5.98559 6.34274 6.42885 6.47788 6.66343 6.84457 7.16701 7.36619 8.87449 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.053589 B = 0.002429 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.366025 B =11524.538557 C =11915.990414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.335 6.335 4 C 0.105 3.895 5 C -0.184 4.184 6 C -0.098 4.098 7 C 0.098 3.902 8 N -0.659 5.659 9 C 0.517 3.483 10 O -0.548 6.548 11 C 0.044 3.956 12 N -0.685 5.685 13 C 0.210 3.790 14 C -0.539 4.539 15 H 0.057 0.943 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.971 3.029 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.276 1.276 22 C -0.101 4.101 23 C -0.148 4.148 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.428 0.572 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.337 0.663 35 H -0.026 1.026 36 H 0.012 0.988 37 H 0.266 0.734 38 H 0.117 0.883 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.101 -18.238 -6.027 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.250 6.250 4 C 0.060 3.940 5 C -0.203 4.203 6 C -0.118 4.118 7 C 0.004 3.996 8 N -0.307 5.307 9 C 0.305 3.695 10 O -0.424 6.424 11 C -0.088 4.088 12 N -0.317 5.317 13 C 0.082 3.918 14 C -0.577 4.577 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.795 3.205 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.202 1.202 22 C -0.121 4.121 23 C -0.167 4.167 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.179 0.821 30 H 0.179 0.821 31 H 0.267 0.733 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.154 0.846 35 H -0.008 1.008 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.676 -17.111 -6.114 29.058 hybrid contribution 1.243 -0.106 0.738 1.450 sum -21.433 -17.217 -5.375 28.012 Atomic orbital electron populations 1.21812 0.91780 1.04166 1.03021 1.23090 0.96749 0.80727 1.02519 1.86075 1.18590 1.31484 1.88815 1.19051 0.82973 0.94076 0.97927 1.21336 0.93180 0.98942 1.06862 1.20996 0.95441 0.95256 1.00087 1.17858 0.83120 0.94232 1.04365 1.43345 1.05392 1.28125 1.53846 1.21036 0.90873 0.79853 0.77713 1.90692 1.63353 1.47585 1.40739 1.21850 0.90602 0.94226 1.02150 1.60279 1.18458 1.35775 1.17156 1.19270 0.82213 0.94395 0.95891 1.21541 0.93602 1.11818 1.30736 0.92451 1.25870 0.95890 1.00668 0.96949 1.70060 1.00987 1.41708 1.44153 0.85313 0.78173 0.78675 0.78307 1.19303 1.20040 1.20182 1.20946 0.92646 0.98944 0.99563 1.20383 0.94343 0.95951 1.06005 0.92193 0.91955 0.88051 0.90601 0.91014 0.82142 0.82130 0.73291 0.90673 0.87000 0.84561 1.00848 0.97037 0.92486 0.86474 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 71.98 0.74 -0.57 16 2 C 0.04 0.51 5.46 71.98 0.39 0.90 16 3 O -0.33 -6.77 10.14 -93.23 -0.95 -7.72 16 4 C 0.11 2.32 6.69 22.50 0.15 2.47 16 5 C -0.18 -3.15 9.03 22.35 0.20 -2.95 16 6 C -0.10 -1.74 9.96 22.38 0.22 -1.51 16 7 C 0.10 2.39 6.28 38.11 0.24 2.63 16 8 N -0.66 -15.14 5.35 -303.39 -1.62 -16.76 16 9 C 0.52 16.46 7.61 87.66 0.67 17.12 16 10 O -0.55 -22.20 13.89 -3.06 -0.04 -22.25 16 11 C 0.04 1.46 6.17 85.56 0.53 1.98 16 12 N -0.68 -30.72 6.11 -521.99 -3.19 -33.91 16 13 C 0.21 11.11 5.44 85.55 0.47 11.58 16 14 C -0.54 -31.37 9.32 25.60 0.24 -31.13 16 15 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 16 C 0.00 0.28 5.46 84.65 0.46 0.74 16 17 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 18 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 C -0.10 -2.89 8.65 22.38 0.19 -2.69 16 23 C -0.15 -3.80 9.98 22.35 0.22 -3.58 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.08 0.65 7.67 -2.39 -0.02 0.63 16 28 H 0.07 0.68 7.65 -2.38 -0.02 0.66 16 29 H 0.16 1.67 6.29 -2.91 -0.02 1.65 16 30 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.43 6.29 8.82 -92.71 -0.82 5.48 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.34 15.35 8.42 -89.69 -0.76 14.60 16 35 H -0.03 -1.44 8.14 -2.39 -0.02 -1.45 16 36 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.12 3.95 6.41 -2.91 -0.02 3.93 16 39 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -73.81 334.44 0.73 -73.08 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.50 Total: 20.65 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 4.72 Total: -5.02 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.53 Total: -105.78 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.99 Total: -29.96 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.81 0.73 -73.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551341471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.266 kcal (2) G-P(sol) polarization free energy of solvation -73.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds