Wall clock time and date at job start Tue Mar 31 2020 00:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47555 * 2 1 4 4 C 1.34777 * 120.00199 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 3 2 7 7 O 1.42899 * 109.46876 * 179.72354 * 6 4 3 8 8 C 1.35897 * 116.99793 * 179.97438 * 7 6 4 9 9 C 1.38819 * 120.01607 * 359.72191 * 8 7 6 10 10 C 1.38182 * 120.08721 * 179.71916 * 9 8 7 11 11 C 1.38150 * 120.13056 * 0.55707 * 10 9 8 12 12 C 1.38938 * 120.03440 * 359.72443 * 11 10 9 13 13 N 1.39671 * 120.04573 * 180.02562 * 12 11 10 14 14 C 1.46502 * 119.99834 * 359.97092 * 13 12 11 15 15 C 1.50706 * 109.47026 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99587 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99934 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00104 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00002 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47013 * 90.00097 * 19 17 15 21 21 H 1.48502 * 109.46686 * 209.99775 * 19 17 15 22 22 H 1.48497 * 109.47292 * 329.99649 * 19 17 15 23 23 C 1.38574 * 120.02031 * 179.97438 * 8 7 6 24 24 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47382 * 300.00439 * 1 2 3 26 26 H 1.09005 * 109.46800 * 60.00640 * 1 2 3 27 27 H 1.08998 * 109.47382 * 239.99561 * 2 1 3 28 28 H 1.09002 * 109.47216 * 119.99998 * 2 1 3 29 29 H 0.97000 * 119.99484 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.46965 * 299.72211 * 6 4 3 31 31 H 1.08994 * 109.46990 * 59.72065 * 6 4 3 32 32 H 1.07997 * 119.95605 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.93230 * 180.27899 * 10 9 8 34 34 H 1.08003 * 119.98633 * 179.73951 * 11 10 9 35 35 H 0.96993 * 119.99972 * 179.97438 * 13 12 11 36 36 H 1.08996 * 109.47226 * 300.00573 * 14 13 12 37 37 H 1.09000 * 109.47085 * 60.00793 * 14 13 12 38 38 H 0.96999 * 120.00779 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.06111 * 359.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1315 0.7055 -0.0005 6 6 3.8459 3.0482 0.0057 7 8 5.2749 3.0481 0.0104 8 6 5.8919 4.2589 0.0158 9 6 5.1362 5.4234 0.0108 10 6 5.7620 6.6553 0.0221 11 6 7.1413 6.7324 0.0269 12 6 7.9028 5.5703 0.0260 13 7 9.2974 5.6480 0.0314 14 6 9.9581 6.9556 0.0372 15 6 11.4528 6.7631 0.0416 16 1 11.8689 5.7664 0.0398 17 6 12.2890 7.8592 0.0469 18 7 13.5934 7.6913 0.0502 19 14 11.5693 9.5831 0.0494 20 1 11.3746 10.0361 1.4501 21 1 12.4995 10.5088 -0.6455 22 1 10.2618 9.5746 -0.6545 23 6 7.2757 4.3318 0.0210 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3881 2.1184 -0.0004 30 1 3.4855 3.5649 -0.8838 31 1 3.4796 3.5591 0.8961 32 1 4.0578 5.3664 0.0030 33 1 5.1716 7.5596 0.0227 34 1 7.6281 7.6966 0.0315 35 1 9.8283 4.8363 0.0312 36 1 9.6666 7.5140 -0.8523 37 1 9.6602 7.5092 0.9277 38 1 14.1818 8.4624 0.0543 39 1 7.8651 3.4268 0.0212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574912682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:16 Heat of formation + Delta-G solvation = -49.821576 kcal Electronic energy + Delta-G solvation = -20213.139939 eV Core-core repulsion = 16927.935261 eV Total energy + Delta-G solvation = -3285.204678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38449 -39.39677 -37.61516 -35.63276 -34.72458 -32.55409 -31.56153 -30.41291 -29.17296 -27.96534 -26.66736 -23.43867 -22.76546 -22.09104 -21.07634 -20.40692 -18.19642 -17.60857 -16.87308 -16.58744 -16.34808 -15.60283 -15.45623 -15.44230 -15.06914 -14.39160 -14.03797 -13.91178 -13.45127 -13.31930 -13.15324 -12.98518 -12.61741 -12.39608 -12.32094 -12.28819 -11.91812 -11.32775 -11.18666 -10.86499 -10.77909 -10.71265 -10.07199 -10.00882 -9.51110 -9.50218 -9.48281 -8.73006 -8.01283 -6.80569 -6.23404 -4.25659 1.83966 2.01371 2.28711 2.35891 3.20607 3.27915 3.29729 3.51952 4.26011 4.26937 4.30082 4.41417 4.55648 4.61185 4.76494 4.84730 4.86252 5.10666 5.18180 5.33979 5.38264 5.43355 5.55371 5.69555 5.75150 5.92991 5.98600 6.22864 6.58802 6.63630 6.72547 6.91118 6.91987 6.97408 7.05865 7.34429 7.62035 7.86295 7.91547 8.37165 8.54897 8.79582 9.35275 10.89016 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.051451 B = 0.002607 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.079629 B =10737.332984 C =11250.349994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.732 5.732 4 C 0.514 3.486 5 O -0.513 6.513 6 C 0.045 3.955 7 O -0.294 6.294 8 C 0.169 3.831 9 C -0.288 4.288 10 C -0.034 4.034 11 C -0.236 4.236 12 C 0.267 3.733 13 N -0.716 5.716 14 C 0.222 3.778 15 C -0.542 4.542 16 H 0.079 0.921 17 C 0.076 3.924 18 N -0.891 5.891 19 Si 0.879 3.121 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.263 1.263 23 C -0.240 4.240 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.402 0.598 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.399 0.601 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.268 0.732 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.743 -8.130 -0.114 28.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.388 5.388 4 C 0.299 3.701 5 O -0.387 6.387 6 C -0.034 4.034 7 O -0.206 6.206 8 C 0.123 3.877 9 C -0.310 4.310 10 C -0.053 4.053 11 C -0.259 4.259 12 C 0.156 3.844 13 N -0.338 5.338 14 C 0.100 3.900 15 C -0.580 4.580 16 H 0.097 0.903 17 C -0.128 4.128 18 N -0.529 5.529 19 Si 0.706 3.294 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.264 4.264 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.236 0.764 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.234 0.766 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.713 -8.705 -0.115 28.096 hybrid contribution -0.507 1.191 0.018 1.295 sum -27.220 -7.513 -0.097 28.238 Atomic orbital electron populations 1.22010 0.94214 1.03415 1.02613 1.21320 0.94278 0.82494 1.02727 1.45882 1.06565 1.09306 1.77010 1.20241 0.82457 0.90808 0.76617 1.90770 1.55059 1.45944 1.46945 1.22325 0.82431 0.94766 1.03847 1.86105 1.17775 1.27713 1.89055 1.18538 0.91553 0.82920 0.94656 1.20706 0.98725 0.92320 1.19217 1.20544 0.93789 0.96408 0.94558 1.20635 0.93631 0.97430 1.14173 1.17672 0.84917 0.92458 0.89350 1.45258 1.01339 1.10271 1.76913 1.19531 0.93529 0.81224 0.95753 1.21071 0.88133 0.95702 1.53077 0.90268 1.24827 0.94678 0.99282 0.94012 1.69879 1.02482 1.31150 1.49344 0.86795 0.79609 0.84155 0.78885 1.19844 1.20848 1.18754 1.19616 0.91412 0.96917 1.18459 0.90628 0.91862 0.91872 0.91298 0.91293 0.76420 0.89053 0.89043 0.86704 0.86469 0.86005 0.76628 0.96226 0.96681 0.92232 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 10.03 37.16 0.37 -0.16 16 2 C 0.11 0.73 6.39 -4.04 -0.03 0.70 16 3 N -0.73 -4.97 5.56 -60.29 -0.33 -5.31 16 4 C 0.51 5.69 7.91 -10.98 -0.09 5.60 16 5 O -0.51 -8.31 16.50 -14.35 -0.24 -8.54 16 6 C 0.05 0.46 5.22 36.01 0.19 0.65 16 7 O -0.29 -4.50 9.67 -39.33 -0.38 -4.88 16 8 C 0.17 2.69 6.68 -39.24 -0.26 2.43 16 9 C -0.29 -3.97 9.04 -39.39 -0.36 -4.33 16 10 C -0.03 -0.49 10.03 -39.63 -0.40 -0.89 16 11 C -0.24 -4.16 9.31 -39.35 -0.37 -4.52 16 12 C 0.27 5.07 6.65 -83.81 -0.56 4.51 16 13 N -0.72 -14.98 5.72 -59.82 -0.34 -15.32 16 14 C 0.22 5.25 3.73 -5.19 -0.02 5.23 16 15 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 16 H 0.08 2.33 7.84 -52.49 -0.41 1.92 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 19 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 23 C -0.24 -4.26 9.83 -39.24 -0.39 -4.65 16 24 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.40 1.36 8.47 -40.82 -0.35 1.01 16 30 H 0.09 0.70 7.65 -51.93 -0.40 0.30 16 31 H 0.09 0.70 7.67 -51.93 -0.40 0.30 16 32 H 0.12 1.17 6.29 -52.49 -0.33 0.84 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 2.19 6.73 -52.48 -0.35 1.84 16 35 H 0.40 8.05 8.33 -40.82 -0.34 7.71 16 36 H 0.02 0.47 7.00 -51.93 -0.36 0.11 16 37 H 0.02 0.36 7.37 -51.93 -0.38 -0.02 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -33.92 332.24 -7.97 -41.88 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.45 Total: 5.58 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.33 Total: -8.68 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.10 Total: -46.40 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.62 Total: -13.42 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.92 -7.97 -41.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574912682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.940 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds