Wall clock time and date at job start Tue Mar 31 2020 00:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47555 * 2 1 4 4 C 1.34777 * 120.00199 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 3 2 7 7 O 1.42899 * 109.46876 * 179.72354 * 6 4 3 8 8 C 1.35897 * 116.99793 * 179.97438 * 7 6 4 9 9 C 1.38819 * 120.01607 * 359.72191 * 8 7 6 10 10 C 1.38182 * 120.08721 * 179.71916 * 9 8 7 11 11 C 1.38150 * 120.13056 * 0.55707 * 10 9 8 12 12 C 1.38938 * 120.03440 * 359.72443 * 11 10 9 13 13 N 1.39671 * 120.04573 * 180.02562 * 12 11 10 14 14 C 1.46502 * 119.99834 * 359.97092 * 13 12 11 15 15 C 1.50706 * 109.47026 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99587 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99934 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00104 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00002 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47013 * 90.00097 * 19 17 15 21 21 H 1.48502 * 109.46686 * 209.99775 * 19 17 15 22 22 H 1.48497 * 109.47292 * 329.99649 * 19 17 15 23 23 C 1.38574 * 120.02031 * 179.97438 * 8 7 6 24 24 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47382 * 300.00439 * 1 2 3 26 26 H 1.09005 * 109.46800 * 60.00640 * 1 2 3 27 27 H 1.08998 * 109.47382 * 239.99561 * 2 1 3 28 28 H 1.09002 * 109.47216 * 119.99998 * 2 1 3 29 29 H 0.97000 * 119.99484 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.46965 * 299.72211 * 6 4 3 31 31 H 1.08994 * 109.46990 * 59.72065 * 6 4 3 32 32 H 1.07997 * 119.95605 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.93230 * 180.27899 * 10 9 8 34 34 H 1.08003 * 119.98633 * 179.73951 * 11 10 9 35 35 H 0.96993 * 119.99972 * 179.97438 * 13 12 11 36 36 H 1.08996 * 109.47226 * 300.00573 * 14 13 12 37 37 H 1.09000 * 109.47085 * 60.00793 * 14 13 12 38 38 H 0.96999 * 120.00779 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.06111 * 359.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1315 0.7055 -0.0005 6 6 3.8459 3.0482 0.0057 7 8 5.2749 3.0481 0.0104 8 6 5.8919 4.2589 0.0158 9 6 5.1362 5.4234 0.0108 10 6 5.7620 6.6553 0.0221 11 6 7.1413 6.7324 0.0269 12 6 7.9028 5.5703 0.0260 13 7 9.2974 5.6480 0.0314 14 6 9.9581 6.9556 0.0372 15 6 11.4528 6.7631 0.0416 16 1 11.8689 5.7664 0.0398 17 6 12.2890 7.8592 0.0469 18 7 13.5934 7.6913 0.0502 19 14 11.5693 9.5831 0.0494 20 1 11.3746 10.0361 1.4501 21 1 12.4995 10.5088 -0.6455 22 1 10.2618 9.5746 -0.6545 23 6 7.2757 4.3318 0.0210 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3881 2.1184 -0.0004 30 1 3.4855 3.5649 -0.8838 31 1 3.4796 3.5591 0.8961 32 1 4.0578 5.3664 0.0030 33 1 5.1716 7.5596 0.0227 34 1 7.6281 7.6966 0.0315 35 1 9.8283 4.8363 0.0312 36 1 9.6666 7.5140 -0.8523 37 1 9.6602 7.5092 0.9277 38 1 14.1818 8.4624 0.0543 39 1 7.8651 3.4268 0.0212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574912682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:16 Heat of formation + Delta-G solvation = -74.533935 kcal Electronic energy + Delta-G solvation = -20214.211548 eV Core-core repulsion = 16927.935261 eV Total energy + Delta-G solvation = -3286.276287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38637 -40.44406 -38.85278 -36.42031 -36.21902 -34.53640 -32.30675 -31.60644 -30.58886 -28.87292 -28.27654 -24.52048 -23.91076 -23.35538 -22.19010 -21.51858 -19.61069 -18.87465 -18.21518 -17.42334 -17.31847 -17.06251 -16.64731 -16.31914 -16.12269 -15.94385 -15.29507 -15.22496 -14.75721 -14.68731 -14.39105 -14.29603 -13.69767 -13.48746 -13.33320 -12.94155 -12.73314 -12.69080 -12.40852 -12.39023 -12.10136 -11.97127 -11.83696 -11.59298 -10.98895 -10.98609 -10.71573 -10.19256 -9.25136 -8.38836 -8.26432 -6.47600 0.59399 0.76310 1.35837 1.37567 1.46275 1.49019 1.55993 2.29802 2.55778 2.94760 2.96028 3.01305 3.64034 4.01193 4.12728 4.13933 4.14941 4.24421 4.34585 4.41732 4.50439 4.52533 4.63144 4.71971 4.93537 5.02113 5.06466 5.07937 5.28274 5.29488 5.37980 5.41934 5.44924 5.67751 5.71851 6.00133 6.39583 6.50495 6.56709 6.64798 6.96842 7.15323 7.20048 8.77135 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.051451 B = 0.002607 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.079629 B =10737.332984 C =11250.349994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.109 3.891 3 N -0.709 5.709 4 C 0.510 3.490 5 O -0.578 6.578 6 C 0.037 3.963 7 O -0.323 6.323 8 C 0.167 3.833 9 C -0.267 4.267 10 C -0.025 4.025 11 C -0.255 4.255 12 C 0.242 3.758 13 N -0.732 5.732 14 C 0.240 3.760 15 C -0.554 4.554 16 H 0.040 0.960 17 C 0.015 3.985 18 N -0.940 5.940 19 Si 0.952 3.048 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.243 1.243 23 C -0.260 4.260 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.422 0.578 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.395 0.605 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.272 0.728 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.524 -6.083 -0.120 33.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.364 5.364 4 C 0.296 3.704 5 O -0.457 6.457 6 C -0.040 4.040 7 O -0.236 6.236 8 C 0.121 3.879 9 C -0.288 4.288 10 C -0.043 4.043 11 C -0.278 4.278 12 C 0.135 3.865 13 N -0.357 5.357 14 C 0.116 3.884 15 C -0.592 4.592 16 H 0.058 0.942 17 C -0.184 4.184 18 N -0.579 5.579 19 Si 0.774 3.226 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.166 1.166 23 C -0.284 4.284 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.260 0.740 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.134 0.866 35 H 0.229 0.771 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -31.615 -6.659 -0.121 32.309 hybrid contribution 0.803 0.367 0.020 0.883 sum -30.812 -6.291 -0.102 31.448 Atomic orbital electron populations 1.21955 0.91306 1.04295 1.03640 1.21418 0.96522 0.81972 1.01469 1.45763 1.05558 1.10379 1.74742 1.20606 0.83239 0.90779 0.75786 1.90753 1.56865 1.47726 1.50341 1.22745 0.79735 0.94565 1.06981 1.86075 1.20944 1.27665 1.88889 1.18617 0.91005 0.84148 0.94095 1.21209 1.00972 0.90793 1.15798 1.20989 0.92589 0.98373 0.92386 1.20818 0.95265 0.96453 1.15253 1.17856 0.83852 0.93648 0.91122 1.45045 1.02473 1.08937 1.79249 1.19162 0.90875 0.82660 0.95686 1.21359 0.90716 0.94280 1.52870 0.94182 1.25854 0.94915 1.04346 0.93322 1.70030 1.04228 1.32786 1.50811 0.85643 0.79549 0.77759 0.79638 1.18656 1.20342 1.16611 1.19674 0.92926 0.96170 1.19635 0.89914 0.90775 0.90783 0.92677 0.92674 0.73982 0.85648 0.85639 0.81900 0.82475 0.86630 0.77136 0.96182 0.96321 0.91922 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 10.03 71.98 0.72 0.15 16 2 C 0.11 1.24 6.39 86.38 0.55 1.79 16 3 N -0.71 -7.82 5.56 -463.06 -2.57 -10.40 16 4 C 0.51 10.43 7.91 87.66 0.69 11.12 16 5 O -0.58 -18.99 16.50 16.00 0.26 -18.73 16 6 C 0.04 0.62 5.22 71.24 0.37 0.99 16 7 O -0.32 -9.35 9.67 -73.35 -0.71 -10.06 16 8 C 0.17 4.99 6.68 22.49 0.15 5.14 16 9 C -0.27 -6.06 9.04 22.40 0.20 -5.86 16 10 C -0.02 -0.61 10.03 22.24 0.22 -0.39 16 11 C -0.25 -8.53 9.31 22.42 0.21 -8.32 16 12 C 0.24 9.28 6.65 38.20 0.25 9.53 16 13 N -0.73 -31.94 5.72 -343.17 -1.96 -33.91 16 14 C 0.24 11.51 3.73 85.63 0.32 11.83 16 15 C -0.55 -31.85 9.83 25.60 0.25 -31.60 16 16 H 0.04 2.53 7.84 -2.91 -0.02 2.51 16 17 C 0.01 0.85 5.47 84.65 0.46 1.31 16 18 N -0.94 -57.85 13.96 21.44 0.30 -57.55 16 19 Si 0.95 42.61 27.47 68.60 1.88 44.49 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 23 C -0.26 -9.36 9.83 22.49 0.22 -9.14 16 24 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.42 1.12 8.47 -92.71 -0.79 0.34 16 30 H 0.13 1.23 7.65 -2.38 -0.02 1.21 16 31 H 0.13 1.23 7.67 -2.39 -0.02 1.21 16 32 H 0.16 2.11 6.29 -2.91 -0.02 2.09 16 33 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.12 3.96 6.73 -2.91 -0.02 3.94 16 35 H 0.39 17.24 8.33 -92.71 -0.77 16.46 16 36 H 0.02 0.97 7.00 -2.39 -0.02 0.95 16 37 H 0.02 0.89 7.37 -2.39 -0.02 0.87 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -79.08 332.24 1.29 -77.78 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.54 Total: 21.80 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 4.63 Total: -13.44 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -4.24 Total: -101.85 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.45 Total: -28.78 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Total: -79.08 1.29 -77.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574912682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.250 kcal (2) G-P(sol) polarization free energy of solvation -79.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds