Wall clock time and date at job start Tue Mar 31 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35944 * 119.60926 * 2 1 4 4 C 1.35881 * 120.59795 * 180.25684 * 3 2 1 5 5 N 1.40383 * 120.08615 * 179.74297 * 4 3 2 6 6 C 1.34780 * 120.00231 * 236.94249 * 5 4 3 7 7 O 1.21297 * 119.99730 * 5.04528 * 6 5 4 8 8 C 1.50692 * 120.00186 * 185.05053 * 6 5 4 9 9 C 1.53008 * 109.46983 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46991 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47075 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47096 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00042 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00086 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00297 * 179.97438 * 14 12 11 16 16 Si 1.86809 * 119.99912 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47359 * 89.99599 * 16 14 12 18 18 H 1.48493 * 109.46983 * 209.99794 * 16 14 12 19 19 H 1.48498 * 109.46898 * 329.99556 * 16 14 12 20 20 C 1.40629 * 119.82563 * 359.47301 * 4 3 2 21 21 C 1.36348 * 119.24364 * 0.24519 * 20 4 3 22 22 C 1.34632 * 119.60618 * 179.70096 * 2 1 3 23 23 O 1.22090 * 119.92790 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47171 * 180.29740 * 1 2 3 25 25 H 1.09005 * 109.47618 * 300.29430 * 1 2 3 26 26 H 1.08996 * 109.47425 * 60.29742 * 1 2 3 27 27 H 1.08002 * 119.70266 * 359.97438 * 3 2 1 28 28 H 0.96998 * 120.00058 * 56.67496 * 5 4 3 29 29 H 1.08999 * 109.47142 * 299.99632 * 8 6 5 30 30 H 1.09000 * 109.47626 * 59.99951 * 8 6 5 31 31 H 1.08994 * 109.47106 * 299.99355 * 9 8 6 32 32 H 1.08997 * 109.47165 * 60.00052 * 9 8 6 33 33 H 1.09004 * 109.47220 * 300.00221 * 10 9 8 34 34 H 1.09000 * 109.47374 * 60.00106 * 10 9 8 35 35 H 1.08999 * 109.46792 * 300.00091 * 11 10 9 36 36 H 1.08997 * 109.47175 * 60.00297 * 11 10 9 37 37 H 0.97002 * 120.00065 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.38365 * 180.27434 * 20 4 3 39 39 H 1.08005 * 120.30714 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1366 1.1819 0.0000 4 6 3.4952 1.2054 -0.0052 5 7 4.1779 2.4320 -0.0106 6 6 5.0582 2.7091 -0.9929 7 8 5.1935 1.9396 -1.9208 8 6 5.8744 3.9746 -0.9383 9 6 6.7880 4.0455 -2.1637 10 6 7.6163 5.3308 -2.1086 11 6 8.5293 5.4020 -3.3342 12 6 9.3447 6.6682 -3.2803 13 1 9.2241 7.3534 -2.4543 14 6 10.2454 6.9515 -4.2850 15 7 10.9567 8.0567 -4.2383 16 14 10.4546 5.7659 -5.7135 17 1 9.5085 6.1274 -6.7994 18 1 11.8471 5.8459 -6.2232 19 1 10.1747 4.3821 -5.2533 20 6 4.2156 -0.0024 0.0005 21 6 3.5351 -1.1839 0.0062 22 6 2.1301 -1.1705 0.0061 23 8 1.5111 -2.2228 0.0111 24 1 -0.3633 -1.0276 0.0053 25 1 -0.3634 0.5184 0.8873 26 1 -0.3634 0.5092 -0.8926 27 1 1.5854 2.1107 -0.0004 28 1 4.0132 3.0818 0.6904 29 1 5.2078 4.8369 -0.9314 30 1 6.4811 3.9771 -0.0327 31 1 7.4547 3.1833 -2.1702 32 1 6.1817 4.0430 -3.0695 33 1 6.9493 6.1929 -2.1023 34 1 8.2226 5.3338 -1.2028 35 1 9.1963 4.5399 -3.3410 36 1 7.9227 5.3992 -4.2398 37 1 11.5901 8.2561 -4.9453 38 1 5.2956 0.0058 0.0009 39 1 4.0711 -2.1215 0.0111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588152590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:04 Heat of formation + Delta-G solvation = -50.017755 kcal Electronic energy + Delta-G solvation = -20332.459447 eV Core-core repulsion = 17047.246261 eV Total energy + Delta-G solvation = -3285.213185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76036 -40.00102 -37.37010 -35.70839 -35.01655 -33.81552 -32.59964 -30.48557 -29.36866 -27.90402 -25.99872 -24.19422 -23.33169 -21.94741 -20.47083 -20.07787 -18.45431 -17.93676 -17.04514 -17.00718 -16.58249 -16.29498 -15.84391 -15.59288 -14.59858 -14.37959 -14.16707 -14.03134 -13.69134 -13.47192 -13.05935 -12.72480 -12.68436 -12.39478 -12.20974 -12.03757 -11.79512 -11.16217 -10.79263 -10.60774 -10.57033 -10.33799 -10.17402 -9.89242 -9.79991 -9.68164 -9.49908 -9.14742 -8.51401 -8.14798 -6.02552 -4.00254 0.41567 1.36280 2.10880 2.48333 2.93548 3.26957 3.33838 3.41196 3.46694 4.09741 4.30380 4.48214 4.54179 4.56571 4.73062 4.77254 4.94116 5.12016 5.17550 5.19647 5.32296 5.39646 5.60007 5.67591 5.69717 5.95580 5.97053 6.07716 6.30463 6.37855 6.62522 6.62963 6.76545 6.94746 7.10273 7.34825 7.47590 7.64676 7.82460 8.00349 8.55834 9.02263 9.60776 11.10864 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041806 B = 0.002528 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.601888 B =11072.391726 C =11360.076265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.493 5.493 3 C 0.114 3.886 4 C 0.045 3.955 5 N -0.679 5.679 6 C 0.514 3.486 7 O -0.519 6.519 8 C -0.136 4.136 9 C -0.108 4.108 10 C -0.102 4.102 11 C -0.016 4.016 12 C -0.520 4.520 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.906 5.906 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C -0.004 4.004 21 C -0.231 4.231 22 C 0.512 3.488 23 O -0.555 6.555 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.165 0.835 28 H 0.410 0.590 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.138 0.862 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.917 -12.947 13.212 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.205 5.205 3 C -0.015 4.015 4 C -0.053 4.053 5 N -0.330 5.330 6 C 0.302 3.698 7 O -0.392 6.392 8 C -0.176 4.176 9 C -0.146 4.146 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.558 4.558 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.027 4.027 21 C -0.253 4.253 22 C 0.314 3.686 23 O -0.438 6.438 24 H 0.123 0.877 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.182 0.818 28 H 0.246 0.754 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.155 0.845 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.079 -14.071 12.423 28.225 hybrid contribution 0.178 0.033 -0.442 0.478 sum -20.901 -14.038 11.981 27.883 Atomic orbital electron populations 1.22215 0.76879 1.06392 1.03244 1.45182 1.09292 1.06272 1.59715 1.21730 0.92590 0.90065 0.97159 1.16690 0.89435 0.87039 1.12092 1.43456 1.43597 1.16689 1.29290 1.21348 0.79081 0.88649 0.80686 1.90751 1.65573 1.50085 1.32770 1.21787 0.98850 0.94184 1.02802 1.21510 0.97511 1.00000 0.95538 1.21476 0.97601 0.94620 1.00308 1.19576 0.94795 0.97495 0.93442 1.21173 1.20782 1.04969 1.08871 0.91104 1.25047 0.95384 0.95105 0.98086 1.69919 1.25723 1.24760 1.34078 0.86774 0.77215 0.82440 0.82870 1.20326 1.21455 1.18895 1.21533 1.01288 0.90941 0.88957 1.22029 0.92530 0.99820 1.10890 1.17175 0.89372 0.82763 0.79283 1.90959 1.69792 1.29530 1.53528 0.87746 0.90208 0.90164 0.81759 0.75380 0.88651 0.88526 0.91685 0.91720 0.92816 0.92767 0.96609 0.97063 0.92798 0.84453 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.28 10.58 59.84 0.63 0.91 16 2 N -0.49 -4.05 2.99 -127.01 -0.38 -4.43 16 3 C 0.11 0.75 10.26 -16.57 -0.17 0.58 16 4 C 0.04 0.38 5.70 -83.88 -0.48 -0.10 16 5 N -0.68 -5.02 5.29 -10.01 -0.05 -5.07 16 6 C 0.51 5.73 7.63 -10.99 -0.08 5.65 16 7 O -0.52 -8.14 15.38 5.54 0.09 -8.06 16 8 C -0.14 -1.43 5.70 -27.88 -0.16 -1.59 16 9 C -0.11 -1.65 4.50 -26.73 -0.12 -1.77 16 10 C -0.10 -1.90 5.15 -26.73 -0.14 -2.04 16 11 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 12 C -0.52 -14.83 9.66 -34.44 -0.33 -15.17 16 13 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.91 -28.06 13.96 55.43 0.77 -27.29 16 16 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 20 C 0.00 -0.04 9.05 -39.36 -0.36 -0.40 16 21 C -0.23 -2.39 9.98 -39.41 -0.39 -2.78 16 22 C 0.51 5.91 7.41 -15.47 -0.11 5.80 16 23 O -0.56 -8.20 16.38 4.84 0.08 -8.12 16 24 H 0.10 0.71 6.85 -51.93 -0.36 0.36 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.17 0.51 8.06 -52.49 -0.42 0.08 16 28 H 0.41 1.55 8.83 -40.82 -0.36 1.19 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -37.38 333.33 -6.78 -44.16 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -5.72 Total: -4.03 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.92 Total: -9.59 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.34 Total: -36.79 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.16 Total: -16.18 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.38 -6.78 -44.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588152590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.859 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds