Wall clock time and date at job start Tue Mar 31 2020 01:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35945 * 119.61188 * 2 1 4 4 C 1.35266 * 120.82603 * 180.02562 * 3 2 1 5 5 C 1.40195 * 120.03823 * 359.97438 * 4 3 2 6 6 C 1.36821 * 119.23181 * 0.02562 * 5 4 3 7 7 N 1.40147 * 120.40147 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99547 * 121.53344 * 7 6 5 9 9 O 1.21298 * 120.00252 * 355.00720 * 8 7 6 10 10 C 1.50706 * 119.99663 * 174.73648 * 8 7 6 11 11 C 1.53001 * 109.46738 * 180.27324 * 10 8 7 12 12 C 1.53004 * 109.46819 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47103 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47295 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99933 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00261 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99850 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00216 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46738 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46910 * 120.00167 * 18 16 14 21 21 H 1.48503 * 109.47020 * 240.00240 * 18 16 14 22 22 C 1.34671 * 119.62064 * 180.28601 * 2 1 3 23 23 O 1.22059 * 120.02637 * 359.97438 * 22 2 1 24 24 H 1.08993 * 109.47273 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46584 * 120.00282 * 1 2 3 26 26 H 1.08998 * 109.46960 * 239.99641 * 1 2 3 27 27 H 1.08004 * 119.58796 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.98346 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.38076 * 180.02562 * 5 4 3 30 30 H 0.96996 * 120.00264 * 301.53867 * 7 6 5 31 31 H 1.08999 * 109.46920 * 300.27012 * 10 8 7 32 32 H 1.09002 * 109.47159 * 60.27385 * 10 8 7 33 33 H 1.08990 * 109.47252 * 299.99792 * 11 10 8 34 34 H 1.09002 * 109.47246 * 60.00114 * 11 10 8 35 35 H 1.08999 * 109.47184 * 299.99900 * 12 11 10 36 36 H 1.09002 * 109.46814 * 60.00223 * 12 11 10 37 37 H 1.08995 * 109.47419 * 300.00677 * 13 12 11 38 38 H 1.09002 * 109.47064 * 60.00425 * 13 12 11 39 39 H 0.97003 * 119.99478 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1819 0.0000 4 6 3.4891 1.2106 -0.0005 5 6 4.2164 0.0120 -0.0005 6 6 3.5424 -1.1786 -0.0005 7 7 4.2448 -2.3913 -0.0011 8 6 4.0547 -3.2806 0.9937 9 8 3.3457 -2.9947 1.9355 10 6 4.7181 -4.6324 0.9329 11 6 4.3356 -5.4443 2.1720 12 6 5.0086 -6.8170 2.1099 13 6 4.6267 -7.6287 3.3493 14 6 5.2890 -8.9810 3.2879 15 1 5.9197 -9.2358 2.4491 16 6 5.0908 -9.8925 4.3031 17 7 4.3231 -9.5820 5.3249 18 14 5.9124 -11.5684 4.2274 19 1 6.7187 -11.6686 2.9844 20 1 6.7985 -11.7390 5.4068 21 1 4.8735 -12.6296 4.2311 22 6 2.1306 -1.1707 -0.0058 23 8 1.5138 -2.2240 -0.0106 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3633 -0.5139 0.8899 27 1 1.5837 2.1096 -0.0004 28 1 4.0089 2.1573 -0.0001 29 1 5.2963 0.0285 -0.0005 30 1 4.8679 -2.5906 -0.7173 31 1 4.3883 -5.1590 0.0374 32 1 5.8003 -4.5050 0.9018 33 1 4.6654 -4.9178 3.0675 34 1 3.2535 -5.5717 2.2031 35 1 4.6785 -7.3434 1.2144 36 1 6.0908 -6.6899 2.0786 37 1 4.9570 -7.1022 4.2446 38 1 3.5446 -7.7558 3.3811 39 1 4.1833 -10.2235 6.0390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588362275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:08 Heat of formation + Delta-G solvation = -51.652417 kcal Electronic energy + Delta-G solvation = -20681.540845 eV Core-core repulsion = 17396.256776 eV Total energy + Delta-G solvation = -3285.284069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.66255 -39.46063 -37.05996 -35.92462 -34.73732 -33.30615 -32.51975 -30.08358 -29.00687 -27.97381 -25.73926 -23.85730 -23.05907 -22.15621 -20.36874 -19.88434 -18.16482 -17.71581 -17.10553 -16.71110 -16.12113 -16.02998 -15.57153 -15.41249 -14.70972 -14.40662 -13.86914 -13.76678 -13.35875 -13.12207 -12.91868 -12.56225 -12.51118 -12.13294 -12.01752 -11.61707 -11.52967 -10.94360 -10.74188 -10.45004 -10.43389 -10.33283 -10.20436 -9.75480 -9.53669 -9.37412 -9.15624 -8.90888 -8.25231 -7.97034 -5.89867 -3.92094 0.48383 1.63374 2.24176 2.85694 3.18196 3.36982 3.42074 3.43821 3.48163 4.22670 4.26596 4.53660 4.63475 4.77191 4.93363 4.94717 5.02817 5.26806 5.36801 5.43372 5.45161 5.48298 5.69104 5.82305 5.95866 6.14793 6.23717 6.39282 6.50104 6.64324 6.79241 6.93519 7.11562 7.27702 7.41979 7.80945 7.83165 7.97617 8.12474 8.38252 8.54133 9.16000 9.71250 11.21580 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042444 B = 0.002651 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.527450 B =10559.266808 C =10887.400670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.499 5.499 3 C 0.121 3.879 4 C -0.220 4.220 5 C -0.042 4.042 6 C 0.033 3.967 7 N -0.673 5.673 8 C 0.518 3.482 9 O -0.512 6.512 10 C -0.134 4.134 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.019 3.981 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.513 3.487 23 O -0.523 6.523 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.162 0.838 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.408 0.592 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 27.428 -15.574 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.211 5.211 3 C -0.005 4.005 4 C -0.244 4.244 5 C -0.066 4.066 6 C -0.065 4.065 7 N -0.323 5.323 8 C 0.307 3.693 9 O -0.385 6.385 10 C -0.174 4.174 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.018 4.018 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.147 4.147 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.311 3.689 23 O -0.402 6.402 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.180 0.820 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.245 0.755 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.490 26.771 -14.700 30.740 hybrid contribution 0.731 -0.854 -0.352 1.178 sum -2.759 25.917 -15.051 30.097 Atomic orbital electron populations 1.22126 0.76886 1.03757 1.04771 1.45384 1.09226 1.06495 1.60031 1.21982 0.93950 0.89259 0.95355 1.20459 0.92396 0.98976 1.12532 1.21473 1.00962 0.90952 0.93172 1.18145 0.90312 0.87263 1.10751 1.43264 1.44850 1.16601 1.27611 1.21224 0.80851 0.86149 0.81110 1.90705 1.37020 1.78038 1.32736 1.21766 1.01215 0.91612 1.02799 1.21458 1.01615 0.96000 0.95080 1.21644 0.98696 0.93413 1.00963 1.19104 0.96868 0.93909 0.91929 1.21330 1.29009 0.99430 1.05864 0.92697 1.25052 0.95463 0.98581 0.95571 1.69997 1.38260 1.35364 1.09900 0.86554 0.79278 0.84390 0.77874 1.19783 1.21084 1.21073 1.17129 0.88656 0.83175 0.79935 1.91012 1.69322 1.29262 1.50586 0.89324 0.90132 0.89925 0.82029 0.83423 0.84513 0.75473 0.88888 0.89053 0.91834 0.91717 0.93441 0.93473 0.96588 0.96567 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.06 59.85 0.60 1.06 16 2 N -0.50 -4.78 2.99 -126.96 -0.38 -5.16 16 3 C 0.12 0.71 10.30 -16.79 -0.17 0.53 16 4 C -0.22 -1.29 10.00 -39.91 -0.40 -1.69 16 5 C -0.04 -0.35 10.01 -39.36 -0.39 -0.74 16 6 C 0.03 0.41 5.71 -83.45 -0.48 -0.07 16 7 N -0.67 -8.39 5.18 -9.72 -0.05 -8.44 16 8 C 0.52 8.51 7.16 -10.98 -0.08 8.43 16 9 O -0.51 -10.83 14.95 -7.33 -0.11 -10.94 16 10 C -0.13 -2.00 5.70 -27.88 -0.16 -2.16 16 11 C -0.10 -2.03 4.50 -26.73 -0.12 -2.15 16 12 C -0.11 -2.39 5.15 -26.73 -0.14 -2.52 16 13 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 14 C -0.52 -15.38 9.11 -34.44 -0.31 -15.69 16 15 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -28.24 13.29 55.43 0.74 -27.51 16 18 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 22 C 0.51 7.34 6.97 -15.19 -0.11 7.23 16 23 O -0.52 -9.81 15.59 -8.01 -0.12 -9.94 16 24 H 0.09 0.23 7.72 -51.93 -0.40 -0.17 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.16 0.23 7.82 -52.48 -0.41 -0.18 16 28 H 0.15 0.41 8.06 -52.48 -0.42 -0.02 16 29 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 30 H 0.41 3.46 8.83 -40.82 -0.36 3.10 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -40.73 335.83 -7.66 -48.39 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.78 Total: -3.00 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.99 Total: -5.86 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.31 Total: -41.11 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.23 Total: -20.87 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -40.73 -7.66 -48.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588362275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.257 kcal (2) G-P(sol) polarization free energy of solvation -40.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds