Wall clock time and date at job start Tue Mar 31 2020 01:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35945 * 119.61188 * 2 1 4 4 C 1.35266 * 120.82603 * 180.02562 * 3 2 1 5 5 C 1.40195 * 120.03823 * 359.97438 * 4 3 2 6 6 C 1.36821 * 119.23181 * 0.02562 * 5 4 3 7 7 N 1.40147 * 120.40147 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99547 * 121.53344 * 7 6 5 9 9 O 1.21298 * 120.00252 * 355.00720 * 8 7 6 10 10 C 1.50706 * 119.99663 * 174.73648 * 8 7 6 11 11 C 1.53001 * 109.46738 * 180.27324 * 10 8 7 12 12 C 1.53004 * 109.46819 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47103 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47295 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99933 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00261 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99850 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00216 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46738 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46910 * 120.00167 * 18 16 14 21 21 H 1.48503 * 109.47020 * 240.00240 * 18 16 14 22 22 C 1.34671 * 119.62064 * 180.28601 * 2 1 3 23 23 O 1.22059 * 120.02637 * 359.97438 * 22 2 1 24 24 H 1.08993 * 109.47273 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46584 * 120.00282 * 1 2 3 26 26 H 1.08998 * 109.46960 * 239.99641 * 1 2 3 27 27 H 1.08004 * 119.58796 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.98346 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.38076 * 180.02562 * 5 4 3 30 30 H 0.96996 * 120.00264 * 301.53867 * 7 6 5 31 31 H 1.08999 * 109.46920 * 300.27012 * 10 8 7 32 32 H 1.09002 * 109.47159 * 60.27385 * 10 8 7 33 33 H 1.08990 * 109.47252 * 299.99792 * 11 10 8 34 34 H 1.09002 * 109.47246 * 60.00114 * 11 10 8 35 35 H 1.08999 * 109.47184 * 299.99900 * 12 11 10 36 36 H 1.09002 * 109.46814 * 60.00223 * 12 11 10 37 37 H 1.08995 * 109.47419 * 300.00677 * 13 12 11 38 38 H 1.09002 * 109.47064 * 60.00425 * 13 12 11 39 39 H 0.97003 * 119.99478 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1819 0.0000 4 6 3.4891 1.2106 -0.0005 5 6 4.2164 0.0120 -0.0005 6 6 3.5424 -1.1786 -0.0005 7 7 4.2448 -2.3913 -0.0011 8 6 4.0547 -3.2806 0.9937 9 8 3.3457 -2.9947 1.9355 10 6 4.7181 -4.6324 0.9329 11 6 4.3356 -5.4443 2.1720 12 6 5.0086 -6.8170 2.1099 13 6 4.6267 -7.6287 3.3493 14 6 5.2890 -8.9810 3.2879 15 1 5.9197 -9.2358 2.4491 16 6 5.0908 -9.8925 4.3031 17 7 4.3231 -9.5820 5.3249 18 14 5.9124 -11.5684 4.2274 19 1 6.7187 -11.6686 2.9844 20 1 6.7985 -11.7390 5.4068 21 1 4.8735 -12.6296 4.2311 22 6 2.1306 -1.1707 -0.0058 23 8 1.5138 -2.2240 -0.0106 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3633 -0.5139 0.8899 27 1 1.5837 2.1096 -0.0004 28 1 4.0089 2.1573 -0.0001 29 1 5.2963 0.0285 -0.0005 30 1 4.8679 -2.5906 -0.7173 31 1 4.3883 -5.1590 0.0374 32 1 5.8003 -4.5050 0.9018 33 1 4.6654 -4.9178 3.0675 34 1 3.2535 -5.5717 2.2031 35 1 4.6785 -7.3434 1.2144 36 1 6.0908 -6.6899 2.0786 37 1 4.9570 -7.1022 4.2446 38 1 3.5446 -7.7558 3.3811 39 1 4.1833 -10.2235 6.0390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588362275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:07 Heat of formation + Delta-G solvation = -81.148494 kcal Electronic energy + Delta-G solvation = -20682.819891 eV Core-core repulsion = 17396.256776 eV Total energy + Delta-G solvation = -3286.563115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.46368 -40.60363 -37.96843 -36.99829 -36.44200 -34.64303 -34.10434 -31.64652 -30.08754 -28.61439 -27.52813 -25.04346 -23.85750 -23.62191 -21.88088 -21.41458 -18.98706 -18.55232 -18.41019 -18.00474 -17.63879 -16.88276 -16.78910 -16.52695 -16.34856 -15.48701 -15.30413 -15.05340 -14.56452 -14.20599 -13.89197 -13.63053 -13.60744 -13.50711 -13.27443 -13.06202 -12.85285 -12.76484 -12.31979 -12.18694 -12.16975 -11.69135 -11.41135 -11.38158 -11.17660 -11.06812 -10.81108 -10.57082 -10.28479 -8.75284 -8.19652 -6.32315 -0.18475 0.91931 1.39346 1.41147 1.46243 1.54746 1.79746 2.25796 2.41584 2.65630 3.12822 3.59663 3.86486 3.89747 4.02738 4.10740 4.12525 4.22659 4.34354 4.43886 4.61546 4.66055 4.71529 4.78335 4.80247 4.85325 5.08950 5.15272 5.24453 5.31166 5.33682 5.52783 5.55774 5.72376 5.75431 5.86095 6.06195 6.23653 6.46754 6.86094 6.95948 7.31229 7.37353 8.93178 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042444 B = 0.002651 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.527450 B =10559.266808 C =10887.400670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.499 5.499 3 C 0.133 3.867 4 C -0.223 4.223 5 C -0.007 4.007 6 C -0.036 4.036 7 N -0.653 5.653 8 C 0.513 3.487 9 O -0.574 6.574 10 C -0.123 4.123 11 C -0.095 4.095 12 C -0.094 4.094 13 C 0.018 3.982 14 C -0.540 4.540 15 H 0.068 0.932 16 C -0.009 4.009 17 N -0.940 5.940 18 Si 0.973 3.027 19 H -0.256 1.256 20 H -0.277 1.277 21 H -0.279 1.279 22 C 0.489 3.511 23 O -0.596 6.596 24 H 0.143 0.857 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.219 0.781 28 H 0.193 0.807 29 H 0.164 0.836 30 H 0.426 0.574 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.046 0.954 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.067 0.933 37 H -0.014 1.014 38 H -0.020 1.020 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 29.950 -17.652 34.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.209 5.209 3 C 0.007 3.993 4 C -0.246 4.246 5 C -0.031 4.031 6 C -0.132 4.132 7 N -0.303 5.303 8 C 0.302 3.698 9 O -0.452 6.452 10 C -0.163 4.163 11 C -0.133 4.133 12 C -0.131 4.131 13 C -0.019 4.019 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.797 3.203 19 H -0.180 1.180 20 H -0.203 1.203 21 H -0.205 1.205 22 C 0.290 3.710 23 O -0.482 6.482 24 H 0.161 0.839 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.235 0.765 28 H 0.210 0.790 29 H 0.182 0.818 30 H 0.265 0.735 31 H 0.131 0.869 32 H 0.148 0.852 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.004 0.996 38 H -0.002 1.002 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.378 29.375 -16.848 33.892 hybrid contribution 0.035 -1.361 0.292 1.393 sum -1.343 28.014 -16.555 32.568 Atomic orbital electron populations 1.22336 0.75700 1.06722 1.03240 1.45542 1.10362 1.06673 1.58302 1.23023 0.94746 0.89443 0.92099 1.21088 0.92605 0.99661 1.11209 1.21947 1.02506 0.90241 0.88378 1.18338 0.89944 0.88284 1.16678 1.42910 1.44359 1.16357 1.26717 1.21416 0.80130 0.87055 0.81175 1.90670 1.39861 1.79292 1.35375 1.21651 1.03420 0.90525 1.00680 1.21237 0.99302 0.95627 0.97156 1.21441 0.99965 0.93525 0.98200 1.19060 0.94483 0.94632 0.93708 1.21775 1.29357 1.00238 1.06460 0.91429 1.26148 0.95995 1.03539 0.94933 1.70160 1.39763 1.37230 1.10861 0.85279 0.78227 0.78137 0.78654 1.17993 1.20263 1.20497 1.17639 0.89723 0.83657 0.79964 1.90949 1.70622 1.31784 1.54869 0.83884 0.90972 0.92400 0.76474 0.78992 0.81799 0.73464 0.86938 0.85190 0.93553 0.94942 0.92287 0.91416 0.99562 1.00156 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 10.06 127.77 1.28 2.09 16 2 N -0.50 -9.05 2.99 -673.70 -2.01 -11.06 16 3 C 0.13 0.98 10.30 83.37 0.86 1.84 16 4 C -0.22 -1.56 10.00 22.06 0.22 -1.34 16 5 C -0.01 -0.09 10.01 22.41 0.22 0.13 16 6 C -0.04 -0.89 5.71 38.20 0.22 -0.67 16 7 N -0.65 -16.37 5.18 -303.04 -1.57 -17.94 16 8 C 0.51 17.52 7.16 87.66 0.63 18.15 16 9 O -0.57 -26.13 14.95 9.22 0.14 -25.99 16 10 C -0.12 -3.67 5.70 29.85 0.17 -3.50 16 11 C -0.09 -3.91 4.50 30.60 0.14 -3.77 16 12 C -0.09 -4.15 5.15 30.59 0.16 -4.00 16 13 C 0.02 1.06 4.97 29.85 0.15 1.21 16 14 C -0.54 -32.59 9.11 25.60 0.23 -32.35 16 15 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 16 C -0.01 -0.56 5.46 84.65 0.46 -0.10 16 17 N -0.94 -61.10 13.29 21.45 0.28 -60.82 16 18 Si 0.97 46.19 29.54 68.60 2.03 48.21 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 C 0.49 14.60 6.97 84.98 0.59 15.19 16 23 O -0.60 -24.55 15.59 6.80 0.11 -24.44 16 24 H 0.14 0.23 7.72 -2.39 -0.02 0.21 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.22 -0.88 7.82 -2.91 -0.02 -0.91 16 28 H 0.19 -0.28 8.06 -2.91 -0.02 -0.30 16 29 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 30 H 0.43 6.79 8.83 -92.71 -0.82 5.97 16 31 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.05 2.03 8.10 -2.39 -0.02 2.01 16 34 H 0.03 1.51 8.10 -2.39 -0.02 1.49 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 39 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -99.16 335.83 4.53 -94.62 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.23 Total: 4.53 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 5.34 Total: -7.11 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -3.30 Total: -89.82 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: 0.24 Total: -50.43 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -99.16 4.53 -94.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588362275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.475 kcal (2) G-P(sol) polarization free energy of solvation -99.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds