Wall clock time and date at job start Tue Mar 31 2020 01:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46784 * 90.00060 * 7 6 5 9 9 C 1.46497 * 119.99962 * 269.99977 * 8 7 6 10 10 C 1.34775 * 120.00029 * 90.00155 * 8 7 6 11 11 O 1.21284 * 119.99911 * 359.97438 * 10 8 7 12 12 C 1.50700 * 120.00113 * 179.97438 * 10 8 7 13 13 C 1.52994 * 109.46906 * 179.97438 * 12 10 8 14 14 C 1.50700 * 109.46906 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00172 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99937 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00089 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47257 * 60.00317 * 18 16 14 20 20 H 1.48503 * 109.46840 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47437 * 300.00165 * 18 16 14 22 22 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 23 23 N 1.31967 * 120.83264 * 0.02562 * 22 6 5 24 24 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 25 25 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 27 27 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 28 28 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 30 30 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 31 31 H 1.08995 * 109.47267 * 89.99849 * 9 8 7 32 32 H 1.09000 * 109.47069 * 210.00404 * 9 8 7 33 33 H 1.09002 * 109.47041 * 330.00406 * 9 8 7 34 34 H 1.08994 * 109.47171 * 299.99920 * 12 10 8 35 35 H 1.09001 * 109.46981 * 60.00098 * 12 10 8 36 36 H 1.08998 * 109.47766 * 300.00219 * 13 12 10 37 37 H 1.09006 * 109.47473 * 60.00210 * 13 12 10 38 38 H 0.97002 * 119.99915 * 180.02562 * 17 16 14 39 39 H 1.07994 * 119.58392 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0793 5.4642 -1.3797 9 6 5.3344 5.1590 -2.0709 10 6 3.1108 6.1537 -2.0145 11 8 2.0716 6.4059 -1.4424 12 6 3.3192 6.6113 -3.4352 13 6 2.0774 7.3648 -3.9155 14 6 2.2860 7.8230 -5.3359 15 1 3.2119 7.5994 -5.8450 16 6 1.2952 8.5285 -5.9853 17 7 0.1684 8.8020 -5.3650 18 14 1.5542 9.0970 -7.7458 19 1 1.7852 7.9174 -8.6180 20 1 0.3493 9.8294 -8.2117 21 1 2.7341 9.9965 -7.8071 22 6 1.8772 3.5097 0.0021 23 7 1.3187 2.3141 0.0026 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0229 0.3694 -0.0035 28 1 5.1255 2.5946 0.0011 29 1 3.2187 5.7201 0.5158 30 1 4.8376 4.9803 0.5150 31 1 5.2429 4.2022 -2.5847 32 1 5.5489 5.9427 -2.7974 33 1 6.1454 5.1052 -1.3445 34 1 4.1854 7.2712 -3.4809 35 1 3.4882 5.7450 -4.0748 36 1 1.2113 6.7046 -3.8698 37 1 1.9079 8.2311 -3.2759 38 1 -0.5288 9.2980 -5.8220 39 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589707959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:56 Heat of formation + Delta-G solvation = -42.122406 kcal Electronic energy + Delta-G solvation = -21118.261139 eV Core-core repulsion = 17833.390322 eV Total energy + Delta-G solvation = -3284.870817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.76608 -39.41422 -37.97791 -35.39130 -33.51965 -32.68303 -31.76215 -30.67725 -27.99813 -26.79267 -26.35233 -24.85643 -23.47271 -22.36335 -21.10631 -18.58396 -18.48251 -17.29009 -16.73130 -16.14547 -16.08817 -15.85344 -15.50424 -14.74599 -14.46296 -14.39988 -14.31756 -13.52446 -13.32813 -13.13975 -12.91628 -12.47160 -12.25635 -12.21699 -12.11049 -11.87982 -11.70214 -11.25815 -11.10958 -10.90719 -10.60539 -10.00589 -9.94297 -9.69858 -9.61305 -9.21258 -9.05427 -8.57042 -8.39884 -8.30682 -5.95181 -3.99650 1.06531 1.15924 2.98215 3.18439 3.28315 3.34816 3.39684 3.41421 3.81262 4.29203 4.47637 4.69793 4.74178 4.89415 5.05645 5.13009 5.17208 5.20898 5.23093 5.39684 5.46760 5.49235 5.53076 5.64753 5.74575 5.80754 5.84004 6.17564 6.22145 6.23930 6.37155 6.68603 6.88851 7.11955 7.68617 7.74761 7.81183 7.87111 8.07854 8.39097 8.71374 9.08476 9.63784 11.15707 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.003708 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.990416 B = 7550.055110 C = 8278.422642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.312 6.312 3 C 0.316 3.684 4 C -0.197 4.197 5 C -0.030 4.030 6 C -0.193 4.193 7 C 0.164 3.836 8 N -0.627 5.627 9 C 0.082 3.918 10 C 0.512 3.488 11 O -0.530 6.530 12 C -0.128 4.128 13 C 0.038 3.962 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.167 3.833 23 N -0.539 5.539 24 H 0.060 0.940 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 -14.987 12.575 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.137 3.863 4 C -0.217 4.217 5 C -0.056 4.056 6 C -0.196 4.196 7 C 0.041 3.959 8 N -0.362 5.362 9 C -0.062 4.062 10 C 0.303 3.697 11 O -0.405 6.405 12 C -0.168 4.168 13 C 0.000 4.000 14 C -0.567 4.567 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.011 3.989 23 N -0.262 5.262 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.443 -15.093 12.850 21.545 hybrid contribution 0.804 0.344 -1.081 1.390 sum 9.247 -14.749 11.769 21.013 Atomic orbital electron populations 1.22857 0.77181 1.02752 1.02743 1.86206 1.23006 1.24764 1.87911 1.19920 0.89473 0.84842 0.92042 1.20992 0.91985 0.99381 1.09368 1.21270 1.00173 0.90773 0.93381 1.21169 0.95155 0.96995 1.06329 1.20110 1.00686 0.91056 0.84094 1.48147 1.17589 1.56858 1.13625 1.21754 0.85227 1.01478 0.97710 1.21612 0.82417 0.76008 0.89701 1.90638 1.26524 1.55522 1.67859 1.21887 1.03920 1.01269 0.89689 1.18895 0.90544 0.95259 0.95282 1.21182 1.01591 1.35573 0.98309 0.92713 1.25015 0.95207 0.96073 0.98001 1.69983 1.05887 1.39850 1.37066 0.86663 0.77501 0.78826 0.85001 1.20266 1.21272 1.20248 1.22593 0.92661 0.93605 0.90059 1.67412 1.40856 0.98805 1.19158 0.92104 0.88753 0.92284 0.84321 0.84351 0.88888 0.89964 0.93101 0.90342 0.91621 0.90235 0.90407 0.95900 0.95815 0.92896 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.45 16 2 O -0.31 -3.94 10.48 -18.72 -0.20 -4.14 16 3 C 0.32 4.31 7.49 -17.12 -0.13 4.19 16 4 C -0.20 -2.21 10.04 -39.27 -0.39 -2.60 16 5 C -0.03 -0.31 9.85 -39.31 -0.39 -0.70 16 6 C -0.19 -2.40 5.48 -104.47 -0.57 -2.97 16 7 C 0.16 1.93 5.60 -5.19 -0.03 1.90 16 8 N -0.63 -8.71 2.86 -182.95 -0.52 -9.23 16 9 C 0.08 0.83 10.29 59.85 0.62 1.44 16 10 C 0.51 9.71 7.67 -10.99 -0.08 9.63 16 11 O -0.53 -11.94 15.11 5.55 0.08 -11.86 16 12 C -0.13 -2.60 4.19 -27.89 -0.12 -2.71 16 13 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 14 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.17 2.48 10.85 -17.56 -0.19 2.29 16 23 N -0.54 -8.18 9.22 -13.33 -0.12 -8.30 16 24 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.09 1.22 7.37 -51.93 -0.38 0.83 16 30 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 33 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 34 H 0.08 1.46 7.40 -51.93 -0.38 1.08 16 35 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.25 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.17 2.64 7.60 -52.49 -0.40 2.24 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -34.92 335.99 -6.40 -41.33 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.65 Total: -1.90 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.77 Total: -0.90 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.09 Total: -44.28 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.11 Total: -16.00 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.92 -6.40 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589707959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.797 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds