Wall clock time and date at job start Tue Mar 31 2020 01:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46784 * 90.00060 * 7 6 5 9 9 C 1.46497 * 119.99962 * 269.99977 * 8 7 6 10 10 C 1.34775 * 120.00029 * 90.00155 * 8 7 6 11 11 O 1.21284 * 119.99911 * 359.97438 * 10 8 7 12 12 C 1.50700 * 120.00113 * 179.97438 * 10 8 7 13 13 C 1.52994 * 109.46906 * 179.97438 * 12 10 8 14 14 C 1.50700 * 109.46906 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00172 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99937 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00089 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47257 * 60.00317 * 18 16 14 20 20 H 1.48503 * 109.46840 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47437 * 300.00165 * 18 16 14 22 22 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 23 23 N 1.31967 * 120.83264 * 0.02562 * 22 6 5 24 24 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 25 25 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 27 27 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 28 28 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 30 30 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 31 31 H 1.08995 * 109.47267 * 89.99849 * 9 8 7 32 32 H 1.09000 * 109.47069 * 210.00404 * 9 8 7 33 33 H 1.09002 * 109.47041 * 330.00406 * 9 8 7 34 34 H 1.08994 * 109.47171 * 299.99920 * 12 10 8 35 35 H 1.09001 * 109.46981 * 60.00098 * 12 10 8 36 36 H 1.08998 * 109.47766 * 300.00219 * 13 12 10 37 37 H 1.09006 * 109.47473 * 60.00210 * 13 12 10 38 38 H 0.97002 * 119.99915 * 180.02562 * 17 16 14 39 39 H 1.07994 * 119.58392 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0793 5.4642 -1.3797 9 6 5.3344 5.1590 -2.0709 10 6 3.1108 6.1537 -2.0145 11 8 2.0716 6.4059 -1.4424 12 6 3.3192 6.6113 -3.4352 13 6 2.0774 7.3648 -3.9155 14 6 2.2860 7.8230 -5.3359 15 1 3.2119 7.5994 -5.8450 16 6 1.2952 8.5285 -5.9853 17 7 0.1684 8.8020 -5.3650 18 14 1.5542 9.0970 -7.7458 19 1 1.7852 7.9174 -8.6180 20 1 0.3493 9.8294 -8.2117 21 1 2.7341 9.9965 -7.8071 22 6 1.8772 3.5097 0.0021 23 7 1.3187 2.3141 0.0026 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0229 0.3694 -0.0035 28 1 5.1255 2.5946 0.0011 29 1 3.2187 5.7201 0.5158 30 1 4.8376 4.9803 0.5150 31 1 5.2429 4.2022 -2.5847 32 1 5.5489 5.9427 -2.7974 33 1 6.1454 5.1052 -1.3445 34 1 4.1854 7.2712 -3.4809 35 1 3.4882 5.7450 -4.0748 36 1 1.2113 6.7046 -3.8698 37 1 1.9079 8.2311 -3.2759 38 1 -0.5288 9.2980 -5.8220 39 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589707959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:55 Heat of formation + Delta-G solvation = -67.479720 kcal Electronic energy + Delta-G solvation = -21119.360714 eV Core-core repulsion = 17833.390322 eV Total energy + Delta-G solvation = -3285.970393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75669 -40.74015 -38.97489 -36.63868 -35.58960 -33.77082 -33.12345 -32.20662 -28.96951 -27.99925 -27.66811 -26.32601 -24.44249 -23.74576 -22.63328 -19.97098 -19.41194 -18.80777 -18.13313 -17.42300 -17.18241 -17.06932 -16.85086 -16.43565 -15.90061 -15.47155 -15.28201 -14.77366 -14.45408 -14.33211 -14.09803 -14.03597 -13.71539 -13.35494 -13.21792 -12.98120 -12.81503 -12.73892 -12.67545 -12.46287 -12.19335 -11.90491 -11.57536 -11.32050 -10.96888 -10.70602 -10.61245 -10.56166 -9.68208 -9.44040 -8.17971 -6.32430 0.06749 0.25767 1.41466 1.46190 1.53903 1.72687 2.10632 2.15851 2.43290 2.80161 3.14826 3.30103 3.77080 3.81408 4.00825 4.04809 4.20412 4.34980 4.40456 4.41212 4.45044 4.52456 4.56498 4.67798 4.73946 4.78910 4.83265 4.93447 4.98181 5.12954 5.26642 5.45986 5.48055 5.62869 5.66481 5.85056 6.16473 6.17521 6.41975 6.80811 6.86101 7.30838 7.38143 8.94481 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.003708 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.990416 B = 7550.055110 C = 8278.422642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.318 6.318 3 C 0.293 3.707 4 C -0.190 4.190 5 C -0.013 4.013 6 C -0.191 4.191 7 C 0.163 3.837 8 N -0.613 5.613 9 C 0.070 3.930 10 C 0.506 3.494 11 O -0.583 6.583 12 C -0.116 4.116 13 C 0.044 3.956 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.974 3.026 19 H -0.263 1.263 20 H -0.288 1.288 21 H -0.260 1.260 22 C 0.136 3.864 23 N -0.569 5.569 24 H 0.044 0.956 25 H 0.128 0.872 26 H 0.053 0.947 27 H 0.170 0.830 28 H 0.188 0.812 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.095 0.905 36 H -0.024 1.024 37 H -0.017 1.017 38 H 0.263 0.737 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.168 -16.514 11.865 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.114 3.886 4 C -0.210 4.210 5 C -0.039 4.039 6 C -0.195 4.195 7 C 0.041 3.959 8 N -0.345 5.345 9 C -0.071 4.071 10 C 0.296 3.704 11 O -0.462 6.462 12 C -0.156 4.156 13 C 0.007 3.993 14 C -0.583 4.583 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.185 1.185 22 C -0.020 4.020 23 N -0.293 5.293 24 H 0.063 0.937 25 H 0.146 0.854 26 H 0.072 0.928 27 H 0.187 0.813 28 H 0.205 0.795 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.113 0.887 36 H -0.005 1.005 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.677 -16.650 12.151 24.198 hybrid contribution -0.487 0.743 -0.788 1.188 sum 12.190 -15.907 11.363 23.037 Atomic orbital electron populations 1.22993 0.76369 1.04595 1.01699 1.86199 1.23900 1.24414 1.87990 1.20384 0.90796 0.84574 0.92843 1.21446 0.90962 1.01113 1.07473 1.21745 1.02149 0.89078 0.90913 1.21221 0.94060 0.98249 1.05984 1.20331 1.02759 0.90016 0.82808 1.48073 1.17481 1.54675 1.14319 1.22130 0.84157 1.01897 0.98921 1.21353 0.82845 0.76818 0.89336 1.90632 1.28913 1.57940 1.68729 1.21624 1.01171 1.01580 0.91175 1.18666 0.92208 0.93563 0.94899 1.21695 1.02380 1.35278 0.98919 0.90615 1.26145 0.94690 0.96113 1.03449 1.70175 1.07179 1.40929 1.39492 0.85379 0.77760 0.78762 0.78377 1.18782 1.21355 1.18465 1.22385 0.94056 0.92849 0.92661 1.67258 1.42273 0.99445 1.20282 0.93706 0.85417 0.92822 0.81287 0.79470 0.91217 0.84785 0.91991 0.90433 0.87215 0.87690 0.88713 1.00526 0.99868 0.92884 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.38 113.37 1.18 1.97 16 2 O -0.32 -7.88 10.48 -89.90 -0.94 -8.82 16 3 C 0.29 7.86 7.49 84.79 0.63 8.49 16 4 C -0.19 -3.68 10.04 22.47 0.23 -3.45 16 5 C -0.01 -0.22 9.85 22.45 0.22 0.00 16 6 C -0.19 -4.48 5.48 -19.77 -0.11 -4.59 16 7 C 0.16 3.49 5.60 85.63 0.48 3.97 16 8 N -0.61 -15.72 2.86 -851.13 -2.43 -18.15 16 9 C 0.07 1.09 10.29 127.77 1.31 2.41 16 10 C 0.51 19.55 7.67 87.66 0.67 20.22 16 11 O -0.58 -28.18 15.11 -3.04 -0.05 -28.22 16 12 C -0.12 -4.72 4.19 29.85 0.13 -4.59 16 13 C 0.04 2.51 4.26 29.85 0.13 2.64 16 14 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 15 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 16 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 17 N -0.94 -60.33 13.29 21.45 0.28 -60.04 16 18 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 C 0.14 4.28 10.85 84.63 0.92 5.19 16 23 N -0.57 -18.12 9.22 -308.95 -2.85 -20.97 16 24 H 0.04 1.05 8.11 -2.38 -0.02 1.03 16 25 H 0.13 1.69 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 27 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.07 1.85 7.37 -2.39 -0.02 1.84 16 30 H 0.13 1.52 7.85 -2.39 -0.02 1.50 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.27 6.44 -2.39 -0.02 1.25 16 33 H 0.11 0.82 7.89 -2.39 -0.02 0.80 16 34 H 0.11 3.70 7.40 -2.39 -0.02 3.68 16 35 H 0.09 3.50 8.11 -2.39 -0.02 3.49 16 36 H -0.02 -1.54 8.10 -2.39 -0.02 -1.56 16 37 H -0.02 -1.09 8.10 -2.38 -0.02 -1.11 16 38 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.14 4.94 7.60 -2.91 -0.02 4.91 16 Total: -1.00 -83.57 335.99 3.56 -80.01 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.03 Total: 8.38 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 6.48 Total: 1.19 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -4.99 Total: -99.16 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.99 Total: -37.04 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -83.57 3.56 -80.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589707959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.528 kcal (2) G-P(sol) polarization free energy of solvation -83.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds