Wall clock time and date at job start Tue Mar 31 2020 01:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35815 * 116.99659 * 2 1 4 4 C 1.38776 * 119.94087 * 359.71832 * 3 2 1 5 5 C 1.37830 * 120.17296 * 180.27792 * 4 3 2 6 6 C 1.39698 * 120.03598 * 0.02562 * 5 4 3 7 7 C 1.47612 * 120.06148 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00033 * 140.52939 * 7 6 5 9 9 N 1.34781 * 119.99663 * 320.52399 * 7 6 5 10 10 C 1.46498 * 119.99716 * 184.85346 * 9 7 6 11 11 C 1.46500 * 120.00078 * 4.84915 * 9 7 6 12 12 C 1.39716 * 119.87269 * 359.97438 * 6 5 4 13 13 C 1.38305 * 119.83252 * 0.02562 * 12 6 5 14 14 N 1.39989 * 120.02102 * 179.97438 * 13 12 6 15 15 C 1.46497 * 120.00174 * 0.02562 * 14 13 12 16 16 C 1.50697 * 109.47297 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00287 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99974 * 180.02562 * 16 15 14 19 19 N 1.31504 * 120.00066 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99947 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47248 * 89.99751 * 20 18 16 22 22 H 1.48504 * 109.47046 * 210.00030 * 20 18 16 23 23 H 1.48503 * 109.47045 * 329.99577 * 20 18 16 24 24 H 1.08996 * 109.47038 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47115 * 300.00483 * 1 2 3 26 26 H 1.09004 * 109.46776 * 60.00562 * 1 2 3 27 27 H 1.07996 * 119.91100 * 0.27698 * 4 3 2 28 28 H 1.08000 * 119.97736 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.47440 * 89.99741 * 10 9 7 30 30 H 1.09004 * 109.47335 * 210.00243 * 10 9 7 31 31 H 1.09004 * 109.46958 * 329.99503 * 10 9 7 32 32 H 1.08995 * 109.47042 * 85.85519 * 11 9 7 33 33 H 1.09005 * 109.47076 * 205.85233 * 11 9 7 34 34 H 1.08994 * 109.47000 * 325.85145 * 11 9 7 35 35 H 1.08004 * 120.08515 * 180.02562 * 12 6 5 36 36 H 0.97008 * 120.00056 * 180.02562 * 14 13 12 37 37 H 1.08996 * 109.47658 * 300.01087 * 15 14 13 38 38 H 1.09004 * 109.46724 * 60.00355 * 15 14 13 39 39 H 0.97004 * 120.00406 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2885 2.3732 -0.0059 5 6 1.9092 3.6038 -0.0117 6 6 3.3039 3.6835 -0.0122 7 6 3.9693 5.0012 -0.0179 8 8 4.9689 5.1803 0.6506 9 7 3.4686 6.0057 -0.7642 10 6 4.1865 7.2795 -0.8539 11 6 2.2066 5.8235 -1.4856 12 6 4.0678 2.5137 -0.0063 13 6 3.4394 1.2817 -0.0004 14 7 4.2009 0.1070 0.0050 15 6 5.6639 0.1825 0.0051 16 6 6.2388 -1.2105 0.0108 17 1 5.5803 -2.0665 0.0136 18 6 7.6056 -1.3922 0.0124 19 7 8.4075 -0.3500 0.0085 20 14 8.3182 -3.1189 0.0188 21 1 8.5081 -3.5813 -1.3796 22 1 9.6274 -3.1116 0.7198 23 1 7.3858 -4.0367 0.7213 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.2102 2.3138 -0.0060 28 1 1.3170 4.5069 -0.0167 29 1 4.8817 7.2465 -1.6928 30 1 3.4725 8.0891 -1.0054 31 1 4.7394 7.4509 0.0697 32 1 1.3728 6.0571 -0.8237 33 1 2.1825 6.4885 -2.3490 34 1 2.1258 4.7896 -1.8209 35 1 5.1463 2.5713 -0.0062 36 1 3.7598 -0.7570 0.0087 37 1 6.0007 0.7106 -0.8870 38 1 6.0000 0.7183 0.8929 39 1 9.3691 -0.4777 0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591773236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:05 Heat of formation + Delta-G solvation = -32.463382 kcal Electronic energy + Delta-G solvation = -21423.810568 eV Core-core repulsion = 18139.358598 eV Total energy + Delta-G solvation = -3284.451970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30790 -39.25931 -36.97557 -35.55132 -34.88924 -32.62628 -30.29130 -29.55131 -28.18125 -27.15773 -26.34408 -25.85402 -23.07831 -22.36404 -20.76308 -19.56152 -17.91211 -17.25043 -16.76645 -16.15418 -15.87285 -15.51976 -15.39122 -14.83461 -14.57723 -14.12049 -13.76524 -13.54251 -13.29554 -13.08124 -12.74670 -12.65719 -12.63146 -12.22613 -12.05649 -12.01362 -11.82062 -11.46311 -10.98916 -10.94114 -10.77320 -10.62425 -10.10039 -9.68982 -9.49605 -9.34854 -8.66864 -8.51078 -8.18085 -6.44764 -6.15054 -4.20624 1.39085 1.90490 2.98323 3.15550 3.26749 3.32808 3.36003 3.50589 4.21293 4.26979 4.51120 4.72532 4.96937 5.06621 5.17452 5.20173 5.21603 5.22264 5.26684 5.42380 5.52057 5.54633 5.65084 5.70792 5.77539 5.97466 6.18553 6.35168 6.50007 6.52893 6.76500 7.02605 7.19223 7.40061 7.47039 7.54554 7.72167 7.99256 8.28843 8.34782 8.69783 8.94823 9.45344 10.95446 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.004987 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.004777 B = 5612.821037 C = 7328.513758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.317 6.317 3 C 0.054 3.946 4 C -0.169 4.169 5 C -0.142 4.142 6 C -0.115 4.115 7 C 0.564 3.436 8 O -0.531 6.531 9 N -0.623 5.623 10 C 0.086 3.914 11 C 0.076 3.924 12 C -0.123 4.123 13 C 0.212 3.788 14 N -0.720 5.720 15 C 0.249 3.751 16 C -0.538 4.538 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.140 0.860 36 H 0.398 0.602 37 H 0.021 0.979 38 H 0.023 0.977 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.200 10.219 -3.393 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.231 6.231 3 C 0.005 3.995 4 C -0.188 4.188 5 C -0.163 4.163 6 C -0.119 4.119 7 C 0.354 3.646 8 O -0.408 6.408 9 N -0.358 5.358 10 C -0.057 4.057 11 C -0.067 4.067 12 C -0.148 4.148 13 C 0.102 3.898 14 N -0.344 5.344 15 C 0.128 3.872 16 C -0.577 4.577 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.525 5.525 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.158 0.842 36 H 0.233 0.767 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.107 10.167 -3.035 19.288 hybrid contribution -0.029 -0.983 -0.072 0.986 sum -16.136 9.184 -3.107 18.825 Atomic orbital electron populations 1.22936 0.79136 1.03327 1.00819 1.85980 1.20637 1.26867 1.89586 1.18674 0.90537 0.84603 1.05708 1.20730 0.99034 0.91598 1.07455 1.20833 0.92793 0.97183 1.05493 1.19326 0.93555 0.92130 1.06919 1.18481 0.83529 0.84010 0.78600 1.90791 1.25661 1.82667 1.41666 1.47614 1.24484 1.14152 1.49530 1.21616 0.96841 0.84196 1.03014 1.22129 0.84873 1.03699 0.96032 1.20533 1.00567 0.88644 1.05066 1.17297 0.87036 0.88863 0.96604 1.45445 1.07614 1.03971 1.77363 1.19166 0.73291 0.97967 0.96761 1.21170 0.91913 0.91751 1.52826 0.91924 1.24930 0.96783 0.97542 0.94706 1.69953 1.03909 1.29494 1.49149 0.86412 0.78503 0.83804 0.78199 1.20480 1.20994 1.19745 0.88781 0.93085 0.93093 0.85729 0.85685 0.92779 0.91494 0.90419 0.92556 0.91466 0.89706 0.84186 0.76737 0.96111 0.95910 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.95 9.72 -19.16 -0.19 -5.14 16 3 C 0.05 0.91 6.71 -38.89 -0.26 0.65 16 4 C -0.17 -2.32 9.01 -39.53 -0.36 -2.67 16 5 C -0.14 -1.96 7.55 -39.19 -0.30 -2.25 16 6 C -0.12 -1.99 5.23 -104.97 -0.55 -2.54 16 7 C 0.56 9.83 7.34 -12.43 -0.09 9.74 16 8 O -0.53 -11.34 16.47 5.29 0.09 -11.25 16 9 N -0.62 -8.12 3.27 -190.74 -0.62 -8.74 16 10 C 0.09 0.92 10.45 59.85 0.63 1.55 16 11 C 0.08 0.69 8.88 59.85 0.53 1.22 16 12 C -0.12 -2.50 8.89 -39.00 -0.35 -2.85 16 13 C 0.21 4.25 6.66 -83.61 -0.56 3.69 16 14 N -0.72 -16.10 5.72 -59.71 -0.34 -16.44 16 15 C 0.25 6.58 4.67 -5.20 -0.02 6.55 16 16 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 17 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 18 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -26.29 13.28 55.43 0.74 -25.56 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 26 H 0.05 0.44 7.65 -51.93 -0.40 0.05 16 27 H 0.12 1.30 6.27 -52.49 -0.33 0.97 16 28 H 0.13 1.34 5.32 -52.49 -0.28 1.06 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.08 0.95 7.36 -51.93 -0.38 0.57 16 32 H 0.06 0.42 6.91 -51.93 -0.36 0.06 16 33 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 34 H 0.08 0.85 5.80 -51.93 -0.30 0.54 16 35 H 0.14 3.20 6.72 -52.48 -0.35 2.84 16 36 H 0.40 8.57 7.68 -40.82 -0.31 8.25 16 37 H 0.02 0.59 7.95 -51.93 -0.41 0.18 16 38 H 0.02 0.66 7.95 -51.93 -0.41 0.24 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 324.82 15.07 4.90 4.90 Total: -1.00 -33.22 324.82 -6.36 -39.58 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.15 Total: 5.52 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.75 Total: 0.81 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.23 Total: -50.74 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.10 Total: -16.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.22 -6.36 -39.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.118 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds