Wall clock time and date at job start Tue Mar 31 2020 01:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35815 * 116.99659 * 2 1 4 4 C 1.38776 * 119.94087 * 359.71832 * 3 2 1 5 5 C 1.37830 * 120.17296 * 180.27792 * 4 3 2 6 6 C 1.39698 * 120.03598 * 0.02562 * 5 4 3 7 7 C 1.47612 * 120.06148 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00033 * 140.52939 * 7 6 5 9 9 N 1.34781 * 119.99663 * 320.52399 * 7 6 5 10 10 C 1.46498 * 119.99716 * 184.85346 * 9 7 6 11 11 C 1.46500 * 120.00078 * 4.84915 * 9 7 6 12 12 C 1.39716 * 119.87269 * 359.97438 * 6 5 4 13 13 C 1.38305 * 119.83252 * 0.02562 * 12 6 5 14 14 N 1.39989 * 120.02102 * 179.97438 * 13 12 6 15 15 C 1.46497 * 120.00174 * 0.02562 * 14 13 12 16 16 C 1.50697 * 109.47297 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00287 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99974 * 180.02562 * 16 15 14 19 19 N 1.31504 * 120.00066 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99947 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47248 * 89.99751 * 20 18 16 22 22 H 1.48504 * 109.47046 * 210.00030 * 20 18 16 23 23 H 1.48503 * 109.47045 * 329.99577 * 20 18 16 24 24 H 1.08996 * 109.47038 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47115 * 300.00483 * 1 2 3 26 26 H 1.09004 * 109.46776 * 60.00562 * 1 2 3 27 27 H 1.07996 * 119.91100 * 0.27698 * 4 3 2 28 28 H 1.08000 * 119.97736 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.47440 * 89.99741 * 10 9 7 30 30 H 1.09004 * 109.47335 * 210.00243 * 10 9 7 31 31 H 1.09004 * 109.46958 * 329.99503 * 10 9 7 32 32 H 1.08995 * 109.47042 * 85.85519 * 11 9 7 33 33 H 1.09005 * 109.47076 * 205.85233 * 11 9 7 34 34 H 1.08994 * 109.47000 * 325.85145 * 11 9 7 35 35 H 1.08004 * 120.08515 * 180.02562 * 12 6 5 36 36 H 0.97008 * 120.00056 * 180.02562 * 14 13 12 37 37 H 1.08996 * 109.47658 * 300.01087 * 15 14 13 38 38 H 1.09004 * 109.46724 * 60.00355 * 15 14 13 39 39 H 0.97004 * 120.00406 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2885 2.3732 -0.0059 5 6 1.9092 3.6038 -0.0117 6 6 3.3039 3.6835 -0.0122 7 6 3.9693 5.0012 -0.0179 8 8 4.9689 5.1803 0.6506 9 7 3.4686 6.0057 -0.7642 10 6 4.1865 7.2795 -0.8539 11 6 2.2066 5.8235 -1.4856 12 6 4.0678 2.5137 -0.0063 13 6 3.4394 1.2817 -0.0004 14 7 4.2009 0.1070 0.0050 15 6 5.6639 0.1825 0.0051 16 6 6.2388 -1.2105 0.0108 17 1 5.5803 -2.0665 0.0136 18 6 7.6056 -1.3922 0.0124 19 7 8.4075 -0.3500 0.0085 20 14 8.3182 -3.1189 0.0188 21 1 8.5081 -3.5813 -1.3796 22 1 9.6274 -3.1116 0.7198 23 1 7.3858 -4.0367 0.7213 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.2102 2.3138 -0.0060 28 1 1.3170 4.5069 -0.0167 29 1 4.8817 7.2465 -1.6928 30 1 3.4725 8.0891 -1.0054 31 1 4.7394 7.4509 0.0697 32 1 1.3728 6.0571 -0.8237 33 1 2.1825 6.4885 -2.3490 34 1 2.1258 4.7896 -1.8209 35 1 5.1463 2.5713 -0.0062 36 1 3.7598 -0.7570 0.0087 37 1 6.0007 0.7106 -0.8870 38 1 6.0000 0.7183 0.8929 39 1 9.3691 -0.4777 0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591773236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:04 Heat of formation + Delta-G solvation = -57.173049 kcal Electronic energy + Delta-G solvation = -21424.882060 eV Core-core repulsion = 18139.358598 eV Total energy + Delta-G solvation = -3285.523462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59659 -40.50138 -38.30933 -36.88838 -36.40012 -34.64933 -31.57526 -31.12731 -29.19647 -28.36359 -27.80509 -26.99125 -24.93696 -23.61960 -22.30370 -20.84981 -19.31083 -18.68161 -18.17745 -17.70808 -17.12500 -16.71066 -16.61084 -16.53338 -15.87800 -15.53426 -15.11596 -14.98651 -14.84074 -14.48804 -14.11785 -13.90515 -13.69253 -13.58463 -13.31559 -13.17755 -12.95106 -12.78316 -12.73411 -12.65953 -12.22022 -11.88080 -11.73112 -11.47204 -11.18573 -10.98012 -10.59573 -9.75730 -9.46676 -8.32249 -8.03767 -6.47935 0.03725 0.58139 1.38358 1.41394 1.52831 1.68798 2.06176 2.31800 2.40104 2.85048 2.86691 3.02370 3.57713 3.88865 4.08459 4.30355 4.37557 4.41669 4.48803 4.51175 4.53380 4.58294 4.77466 4.80869 4.84002 4.90447 4.95514 4.97239 5.10363 5.23144 5.27380 5.40098 5.49572 5.54376 5.74592 5.85347 6.26215 6.30745 6.52192 6.73916 7.08679 7.12868 7.26508 8.79988 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.004987 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.004777 B = 5612.821037 C = 7328.513758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.069 3.931 4 C -0.156 4.156 5 C -0.105 4.105 6 C -0.132 4.132 7 C 0.553 3.447 8 O -0.591 6.591 9 N -0.614 5.614 10 C 0.080 3.920 11 C 0.064 3.936 12 C -0.149 4.149 13 C 0.172 3.828 14 N -0.731 5.731 15 C 0.275 3.725 16 C -0.557 4.557 17 H 0.072 0.928 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.984 3.016 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.260 1.260 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.177 0.823 28 H 0.172 0.828 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.401 0.599 37 H -0.014 1.014 38 H -0.018 1.018 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.484 10.486 -4.216 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.019 3.981 4 C -0.175 4.175 5 C -0.125 4.125 6 C -0.136 4.136 7 C 0.343 3.657 8 O -0.472 6.472 9 N -0.346 5.346 10 C -0.062 4.062 11 C -0.077 4.077 12 C -0.174 4.174 13 C 0.067 3.933 14 N -0.359 5.359 15 C 0.152 3.848 16 C -0.595 4.595 17 H 0.090 0.910 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.807 3.193 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.184 1.184 24 H 0.130 0.870 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.194 0.806 28 H 0.189 0.811 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.235 0.765 37 H 0.004 0.996 38 H 0.000 1.000 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.502 10.492 -3.899 23.358 hybrid contribution 1.069 -0.902 0.130 1.405 sum -19.433 9.589 -3.769 21.996 Atomic orbital electron populations 1.23374 0.75928 1.05433 1.02714 1.85976 1.23899 1.26329 1.89157 1.18761 0.89202 0.86461 1.03649 1.21265 1.01257 0.89896 1.05087 1.21354 0.91054 0.99221 1.00876 1.19424 0.95187 0.90963 1.07986 1.18676 0.83089 0.85010 0.78926 1.90753 1.28235 1.83640 1.44608 1.47766 1.25456 1.13565 1.47798 1.21821 0.97993 0.84332 1.02008 1.22477 0.83520 1.04219 0.97502 1.20302 0.98698 0.90737 1.07627 1.17529 0.88888 0.87642 0.99290 1.44954 1.05667 1.05045 1.80248 1.18507 0.76253 0.96758 0.93269 1.21558 0.92693 0.92323 1.52891 0.90950 1.26023 0.97113 1.02419 0.93779 1.70117 1.04345 1.32349 1.50025 0.85177 0.77624 0.77829 0.78716 1.19346 1.20521 1.18402 0.86952 0.91229 0.90836 0.80597 0.81091 0.92555 0.86993 0.92661 0.89434 0.88312 0.90501 0.89134 0.76450 0.99623 0.99986 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.91 9.72 -91.48 -0.89 -10.80 16 3 C 0.07 2.22 6.71 22.72 0.15 2.37 16 4 C -0.16 -3.62 9.01 22.30 0.20 -3.42 16 5 C -0.10 -2.52 7.55 22.53 0.17 -2.35 16 6 C -0.13 -4.62 5.23 -20.09 -0.11 -4.73 16 7 C 0.55 19.89 7.34 86.72 0.64 20.53 16 8 O -0.59 -27.33 16.47 -3.97 -0.07 -27.40 16 9 N -0.61 -15.00 3.27 -875.63 -2.87 -17.87 16 10 C 0.08 1.61 10.45 127.77 1.34 2.94 16 11 C 0.06 0.88 8.88 127.77 1.13 2.01 16 12 C -0.15 -6.60 8.89 22.64 0.20 -6.39 16 13 C 0.17 7.31 6.66 38.17 0.25 7.57 16 14 N -0.73 -35.30 5.72 -342.82 -1.96 -37.27 16 15 C 0.28 16.01 4.67 85.63 0.40 16.41 16 16 C -0.56 -32.71 9.28 25.60 0.24 -32.48 16 17 H 0.07 4.00 7.60 -2.91 -0.02 3.98 16 18 C 0.01 0.36 5.46 84.66 0.46 0.82 16 19 N -0.93 -58.26 13.28 21.45 0.28 -57.97 16 20 Si 0.98 44.78 29.54 68.60 2.03 46.81 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 24 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 26 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 27 H 0.18 2.37 6.27 -2.91 -0.02 2.35 16 28 H 0.17 2.58 5.32 -2.91 -0.02 2.57 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 1.24 8.07 -2.39 -0.02 1.22 16 31 H 0.05 1.38 7.36 -2.38 -0.02 1.36 16 32 H 0.09 0.73 6.91 -2.39 -0.02 0.71 16 33 H 0.10 0.82 8.04 -2.38 -0.02 0.80 16 34 H 0.08 1.22 5.80 -2.39 -0.01 1.21 16 35 H 0.09 4.82 6.72 -2.91 -0.02 4.80 16 36 H 0.40 18.23 7.68 -92.70 -0.71 17.52 16 37 H -0.01 -0.88 7.95 -2.39 -0.02 -0.90 16 38 H -0.02 -1.13 7.95 -2.38 -0.02 -1.15 16 39 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -82.52 324.82 3.08 -79.44 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.36 Total: 20.35 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 6.19 Total: 4.71 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -4.54 Total: -113.11 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.95 Total: -38.20 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -82.52 3.08 -79.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.265 kcal (2) G-P(sol) polarization free energy of solvation -82.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds