Wall clock time and date at job start Tue Mar 31 2020 01:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34895 * 116.99850 * 2 1 4 4 O 1.21619 * 120.00125 * 0.02562 * 3 2 1 5 5 C 1.46496 * 120.00073 * 180.02562 * 3 2 1 6 6 C 1.37988 * 126.26283 * 179.97438 * 5 3 2 7 7 C 1.39794 * 106.96860 * 179.97438 * 6 5 3 8 8 C 1.50702 * 126.08084 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.47267 * 90.02173 * 8 7 6 10 10 C 1.47961 * 111.00005 * 189.99947 * 9 8 7 11 11 C 1.53934 * 86.17939 * 137.58072 * 10 9 8 12 12 C 1.50703 * 113.73399 * 221.81705 * 11 10 9 13 13 H 1.07999 * 119.99920 * 358.09577 * 12 11 10 14 14 C 1.37877 * 119.99669 * 178.10223 * 12 11 10 15 15 N 1.31521 * 119.99589 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00327 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47056 * 90.00030 * 16 14 12 18 18 H 1.48501 * 109.47403 * 209.99911 * 16 14 12 19 19 H 1.48493 * 109.47309 * 330.00170 * 16 14 12 20 20 C 1.48296 * 111.00409 * 289.35248 * 9 8 7 21 21 C 1.35491 * 107.84352 * 0.25680 * 7 6 5 22 22 N 1.34957 * 108.98316 * 359.57311 * 21 7 6 23 23 C 1.46494 * 125.63771 * 180.15049 * 22 21 7 24 24 H 1.08996 * 109.47323 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47168 * 299.99890 * 1 2 3 26 26 H 1.09002 * 109.47595 * 59.99929 * 1 2 3 27 27 H 1.08004 * 126.51707 * 0.02700 * 6 5 3 28 28 H 1.08997 * 109.47111 * 330.01939 * 8 7 6 29 29 H 1.09007 * 109.47191 * 210.02102 * 8 7 6 30 30 H 1.09007 * 113.75652 * 23.26342 * 10 9 8 31 31 H 1.08993 * 113.76177 * 251.90248 * 10 9 8 32 32 H 1.09002 * 113.73279 * 90.64057 * 11 10 9 33 33 H 0.96995 * 119.99785 * 179.97438 * 15 14 12 34 34 H 1.09001 * 113.86054 * 108.14174 * 20 9 8 35 35 H 1.09000 * 113.76062 * 336.68481 * 20 9 8 36 36 H 1.08001 * 125.50910 * 179.72183 * 21 7 6 37 37 H 1.09005 * 109.47320 * 270.33084 * 23 22 21 38 38 H 1.09001 * 109.47471 * 30.33194 * 23 22 21 39 39 H 1.09003 * 109.47658 * 150.32785 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2019 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5273 1.2787 -0.0006 6 6 4.2841 2.4325 -0.0011 7 6 5.6259 2.0403 -0.0009 8 6 6.8195 2.9604 -0.0008 9 7 7.2075 3.2590 1.3842 10 6 8.2168 4.3399 1.4308 11 6 7.4134 4.8985 2.6191 12 6 7.2546 6.3969 2.5932 13 1 7.7136 6.9750 1.8048 14 6 6.5235 7.0297 3.5761 15 7 6.3853 8.3374 3.5537 16 14 5.7292 6.0297 4.9393 17 1 6.6772 5.9004 6.0751 18 1 4.4947 6.7143 5.4005 19 1 5.3843 4.6796 4.4263 20 6 6.2078 4.1375 2.0386 21 6 5.6626 0.6859 -0.0061 22 7 4.3988 0.2125 0.0001 23 6 4.0171 -1.2018 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 3.9108 3.4460 -0.0008 28 1 6.5638 3.8872 -0.5145 29 1 7.6506 2.4775 -0.5149 30 1 8.2090 4.9861 0.5529 31 1 9.2159 3.9966 1.6987 32 1 7.7443 4.5230 3.5875 33 1 5.8706 8.7826 4.2449 34 1 5.6031 3.6326 2.7918 35 1 5.6138 4.7246 1.3382 36 1 6.5584 0.0827 -0.0115 37 1 3.9228 -1.5530 -1.0272 38 1 4.7815 -1.7844 0.5147 39 1 3.0631 -1.3207 0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597204217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:56 Heat of formation + Delta-G solvation = 5.644837 kcal Electronic energy + Delta-G solvation = -21474.469951 eV Core-core repulsion = 18191.670477 eV Total energy + Delta-G solvation = -3282.799474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55109 -39.97102 -38.67168 -36.55004 -33.65829 -32.39508 -30.64810 -29.34860 -27.62664 -26.92803 -25.16837 -24.93528 -23.15451 -21.92877 -20.01388 -19.73455 -18.46865 -17.45991 -17.07382 -16.89274 -16.61840 -15.70405 -15.37981 -14.93286 -14.48608 -14.22570 -13.86831 -13.45570 -13.40308 -13.24439 -12.89422 -12.75499 -12.44485 -12.28215 -12.18376 -11.80223 -11.62178 -11.24074 -11.01952 -10.90842 -10.76315 -10.26071 -9.91524 -9.81856 -9.52066 -9.06608 -8.59476 -8.49826 -8.17523 -7.89467 -6.03612 -4.03208 1.20875 2.46810 2.64516 2.75883 3.15952 3.35758 3.44362 3.50232 4.49397 4.55475 4.66469 4.84643 4.93838 4.94487 4.97852 5.03451 5.23319 5.24042 5.29300 5.39389 5.43666 5.75523 5.90277 5.95390 6.09438 6.17717 6.26516 6.30942 6.48013 6.57346 6.60253 6.78530 6.88886 6.98303 7.12795 7.18765 7.46112 7.66416 7.78380 7.96320 8.55857 8.99550 9.60041 11.09140 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.004649 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.756212 B = 6020.876027 C = 6935.113400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.538 3.462 4 O -0.499 6.499 5 C -0.062 4.062 6 C -0.076 4.076 7 C -0.161 4.161 8 C 0.091 3.909 9 N -0.487 5.487 10 C 0.011 3.989 11 C -0.004 4.004 12 C -0.512 4.512 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.901 5.901 16 Si 0.872 3.128 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.253 1.253 20 C 0.002 3.998 21 C 0.050 3.950 22 N -0.423 5.423 23 C 0.069 3.931 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.150 0.850 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.263 0.737 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.171 0.829 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 -21.697 -8.726 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.384 3.616 4 O -0.387 6.387 5 C -0.170 4.170 6 C -0.103 4.103 7 C -0.167 4.167 8 C -0.037 4.037 9 N -0.209 5.209 10 C -0.117 4.117 11 C -0.023 4.023 12 C -0.550 4.550 13 H 0.091 0.909 14 C -0.128 4.128 15 N -0.539 5.539 16 Si 0.699 3.301 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.178 1.178 20 C -0.127 4.127 21 C -0.087 4.087 22 N -0.098 5.098 23 C -0.072 4.072 24 H 0.118 0.882 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.168 0.832 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.189 0.811 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.173 -22.274 -8.376 24.855 hybrid contribution -0.979 0.320 0.320 1.079 sum -8.153 -21.954 -8.056 24.766 Atomic orbital electron populations 1.23250 0.76110 1.03493 1.02830 1.86580 1.23629 1.33015 1.85189 1.19841 0.87043 0.81577 0.73166 1.90918 1.65447 1.35715 1.46600 1.19212 0.86235 0.88015 1.23534 1.21356 0.91976 0.96861 1.00107 1.19365 0.94318 0.92977 1.10046 1.20919 0.93345 0.96472 0.93005 1.68650 1.07874 1.32008 1.12398 1.23872 0.96126 0.91692 1.00034 1.20754 0.91573 0.95970 0.94024 1.20995 1.32949 0.89303 1.11777 0.90862 1.24986 0.95674 0.94608 0.97543 1.69915 1.41019 1.08265 1.34667 0.86948 0.79040 0.81610 0.82524 1.20430 1.21592 1.17761 1.24404 0.96512 0.93613 0.98195 1.21767 0.86613 0.94926 1.05358 1.43780 1.05716 1.06128 1.54198 1.22224 1.03265 0.78095 1.03627 0.88166 0.91746 0.91798 0.83221 0.93472 0.90964 0.91982 0.91292 0.93168 0.92697 0.91735 0.91725 0.81131 0.90685 0.89626 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.37 -4.12 8.00 -41.03 -0.33 -4.44 16 3 C 0.54 7.90 7.92 34.06 0.27 8.17 16 4 O -0.50 -8.73 16.68 -19.36 -0.32 -9.05 16 5 C -0.06 -0.92 6.89 -81.99 -0.56 -1.48 16 6 C -0.08 -1.24 10.29 -39.09 -0.40 -1.64 16 7 C -0.16 -2.46 5.23 -105.02 -0.55 -3.01 16 8 C 0.09 1.47 5.31 -4.97 -0.03 1.45 16 9 N -0.49 -9.31 6.26 -239.48 -1.50 -10.81 16 10 C 0.01 0.23 7.53 -2.76 -0.02 0.20 16 11 C 0.00 -0.09 2.88 -90.84 -0.26 -0.35 16 12 C -0.51 -14.39 9.33 -34.44 -0.32 -14.72 16 13 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 14 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 16 Si 0.87 21.83 27.08 -169.99 -4.60 17.22 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.25 -6.08 5.27 56.52 0.30 -5.78 16 20 C 0.00 0.03 5.87 -2.57 -0.02 0.02 16 21 C 0.05 0.63 11.26 -17.16 -0.19 0.43 16 22 N -0.42 -5.10 3.15 -120.40 -0.38 -5.48 16 23 C 0.07 0.53 10.56 59.84 0.63 1.16 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.15 2.56 8.06 -52.48 -0.42 2.14 16 28 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 29 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 30 H 0.06 1.24 7.74 -51.92 -0.40 0.84 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.21 7.20 -51.93 -0.37 0.84 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.06 1.46 6.82 -51.93 -0.35 1.11 16 35 H 0.06 1.47 7.74 -51.93 -0.40 1.07 16 36 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.75 6.15 -51.93 -0.32 0.43 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -33.59 326.51 -7.64 -41.22 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.72 Total: -0.23 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.48 Total: -6.35 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -1.10 Total: -43.28 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.65 Total: -13.50 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.60 Total: 17.22 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.59 -7.64 -41.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.868 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds