Wall clock time and date at job start Tue Mar 31 2020 01:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34895 * 116.99850 * 2 1 4 4 O 1.21619 * 120.00125 * 0.02562 * 3 2 1 5 5 C 1.46496 * 120.00073 * 180.02562 * 3 2 1 6 6 C 1.37988 * 126.26283 * 179.97438 * 5 3 2 7 7 C 1.39794 * 106.96860 * 179.97438 * 6 5 3 8 8 C 1.50702 * 126.08084 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.47267 * 90.02173 * 8 7 6 10 10 C 1.47961 * 111.00005 * 189.99947 * 9 8 7 11 11 C 1.53934 * 86.17939 * 137.58072 * 10 9 8 12 12 C 1.50703 * 113.73399 * 221.81705 * 11 10 9 13 13 H 1.07999 * 119.99920 * 358.09577 * 12 11 10 14 14 C 1.37877 * 119.99669 * 178.10223 * 12 11 10 15 15 N 1.31521 * 119.99589 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00327 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47056 * 90.00030 * 16 14 12 18 18 H 1.48501 * 109.47403 * 209.99911 * 16 14 12 19 19 H 1.48493 * 109.47309 * 330.00170 * 16 14 12 20 20 C 1.48296 * 111.00409 * 289.35248 * 9 8 7 21 21 C 1.35491 * 107.84352 * 0.25680 * 7 6 5 22 22 N 1.34957 * 108.98316 * 359.57311 * 21 7 6 23 23 C 1.46494 * 125.63771 * 180.15049 * 22 21 7 24 24 H 1.08996 * 109.47323 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47168 * 299.99890 * 1 2 3 26 26 H 1.09002 * 109.47595 * 59.99929 * 1 2 3 27 27 H 1.08004 * 126.51707 * 0.02700 * 6 5 3 28 28 H 1.08997 * 109.47111 * 330.01939 * 8 7 6 29 29 H 1.09007 * 109.47191 * 210.02102 * 8 7 6 30 30 H 1.09007 * 113.75652 * 23.26342 * 10 9 8 31 31 H 1.08993 * 113.76177 * 251.90248 * 10 9 8 32 32 H 1.09002 * 113.73279 * 90.64057 * 11 10 9 33 33 H 0.96995 * 119.99785 * 179.97438 * 15 14 12 34 34 H 1.09001 * 113.86054 * 108.14174 * 20 9 8 35 35 H 1.09000 * 113.76062 * 336.68481 * 20 9 8 36 36 H 1.08001 * 125.50910 * 179.72183 * 21 7 6 37 37 H 1.09005 * 109.47320 * 270.33084 * 23 22 21 38 38 H 1.09001 * 109.47471 * 30.33194 * 23 22 21 39 39 H 1.09003 * 109.47658 * 150.32785 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2019 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5273 1.2787 -0.0006 6 6 4.2841 2.4325 -0.0011 7 6 5.6259 2.0403 -0.0009 8 6 6.8195 2.9604 -0.0008 9 7 7.2075 3.2590 1.3842 10 6 8.2168 4.3399 1.4308 11 6 7.4134 4.8985 2.6191 12 6 7.2546 6.3969 2.5932 13 1 7.7136 6.9750 1.8048 14 6 6.5235 7.0297 3.5761 15 7 6.3853 8.3374 3.5537 16 14 5.7292 6.0297 4.9393 17 1 6.6772 5.9004 6.0751 18 1 4.4947 6.7143 5.4005 19 1 5.3843 4.6796 4.4263 20 6 6.2078 4.1375 2.0386 21 6 5.6626 0.6859 -0.0061 22 7 4.3988 0.2125 0.0001 23 6 4.0171 -1.2018 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 3.9108 3.4460 -0.0008 28 1 6.5638 3.8872 -0.5145 29 1 7.6506 2.4775 -0.5149 30 1 8.2090 4.9861 0.5529 31 1 9.2159 3.9966 1.6987 32 1 7.7443 4.5230 3.5875 33 1 5.8706 8.7826 4.2449 34 1 5.6031 3.6326 2.7918 35 1 5.6138 4.7246 1.3382 36 1 6.5584 0.0827 -0.0115 37 1 3.9228 -1.5530 -1.0272 38 1 4.7815 -1.7844 0.5147 39 1 3.0631 -1.3207 0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597204217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:55 Heat of formation + Delta-G solvation = -17.831799 kcal Electronic energy + Delta-G solvation = -21475.487974 eV Core-core repulsion = 18191.670477 eV Total energy + Delta-G solvation = -3283.817497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59136 -41.03866 -40.28794 -37.59766 -35.03299 -34.23609 -31.92749 -30.61605 -28.62079 -28.09909 -26.83851 -26.35851 -24.29619 -23.43292 -21.08066 -20.83633 -20.27258 -19.06984 -18.43082 -18.08740 -17.59845 -16.85490 -16.66210 -16.27067 -16.07273 -15.41933 -15.20959 -14.92809 -14.69636 -14.36750 -14.30461 -14.11649 -13.53365 -13.35288 -13.15617 -13.12269 -12.97564 -12.80563 -12.68754 -12.08881 -11.91248 -11.88725 -11.78371 -11.59118 -11.34154 -11.08994 -10.65953 -9.73235 -9.54524 -9.21870 -8.28867 -6.32437 0.11873 1.35599 1.39140 1.51185 1.51847 1.58541 1.89313 2.00844 2.37717 3.06121 3.39158 3.66750 3.87085 4.08235 4.17598 4.24511 4.26238 4.28535 4.38534 4.43685 4.48496 4.54608 4.63086 4.70959 4.77791 4.81480 4.85552 4.92380 4.99727 5.08793 5.14527 5.21412 5.52732 5.53626 5.68423 5.69114 5.89927 6.25635 6.30266 6.35923 6.60359 6.73663 7.34124 8.87450 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.004649 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.756212 B = 6020.876027 C = 6935.113400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.539 3.461 4 O -0.540 6.540 5 C -0.077 4.077 6 C -0.107 4.107 7 C -0.189 4.189 8 C 0.095 3.905 9 N -0.472 5.472 10 C 0.021 3.979 11 C -0.018 4.018 12 C -0.514 4.514 13 H 0.035 0.965 14 C 0.016 3.984 15 N -0.950 5.950 16 Si 0.935 3.065 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.237 1.237 20 C 0.012 3.988 21 C 0.076 3.924 22 N -0.411 5.411 23 C 0.060 3.940 24 H 0.142 0.858 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.123 0.877 28 H 0.030 0.970 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.265 0.735 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.213 0.787 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -26.160 -8.660 28.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.387 3.613 4 O -0.431 6.431 5 C -0.187 4.187 6 C -0.134 4.134 7 C -0.194 4.194 8 C -0.034 4.034 9 N -0.194 5.194 10 C -0.107 4.107 11 C -0.038 4.038 12 C -0.553 4.553 13 H 0.053 0.947 14 C -0.181 4.181 15 N -0.590 5.590 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.161 1.161 20 C -0.117 4.117 21 C -0.063 4.063 22 N -0.085 5.085 23 C -0.079 4.079 24 H 0.160 0.840 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.048 0.952 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.230 0.770 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.797 -26.801 -8.326 28.876 hybrid contribution -1.099 1.652 0.190 1.994 sum -7.896 -25.148 -8.136 27.586 Atomic orbital electron populations 1.23605 0.74225 1.06093 1.02478 1.86576 1.25358 1.30833 1.84356 1.19922 0.87143 0.81936 0.72283 1.90894 1.66297 1.37233 1.48688 1.19164 0.86684 0.88639 1.24173 1.21299 0.93415 0.96546 1.02155 1.19320 0.93147 0.94399 1.12546 1.20923 0.95036 0.96462 0.90965 1.68603 1.06135 1.30248 1.14462 1.23781 0.97237 0.91682 0.98017 1.20814 0.94029 0.93101 0.95830 1.21272 1.31876 0.91754 1.10352 0.94688 1.25848 0.96460 0.95516 1.00300 1.70059 1.42667 1.10230 1.36056 0.85928 0.78000 0.80598 0.79542 1.19142 1.21837 1.16062 1.24088 0.95968 0.93696 0.97947 1.22272 0.87803 0.94054 1.02171 1.44081 1.05103 1.07263 1.52017 1.22602 1.04295 0.75540 1.05437 0.83996 0.92390 0.92004 0.85943 0.95186 0.87755 0.92567 0.88743 0.92791 0.92622 0.92182 0.93586 0.77019 0.88660 0.86567 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.57 113.37 1.20 1.61 16 2 O -0.35 -7.33 8.00 -58.10 -0.46 -7.79 16 3 C 0.54 15.73 7.92 69.97 0.55 16.29 16 4 O -0.54 -19.56 16.68 19.45 0.32 -19.23 16 5 C -0.08 -2.23 6.89 40.32 0.28 -1.96 16 6 C -0.11 -3.56 10.29 22.59 0.23 -3.32 16 7 C -0.19 -5.46 5.23 -20.12 -0.11 -5.56 16 8 C 0.09 2.89 5.31 85.56 0.45 3.35 16 9 N -0.47 -17.19 6.26 -911.59 -5.71 -22.90 16 10 C 0.02 0.83 7.53 86.41 0.65 1.48 16 11 C -0.02 -0.87 2.88 -10.89 -0.03 -0.90 16 12 C -0.51 -29.79 9.33 25.60 0.24 -29.55 16 13 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 14 C 0.02 0.95 5.47 84.65 0.46 1.41 16 15 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 16 Si 0.94 45.55 27.08 68.60 1.86 47.41 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 19 H -0.24 -10.84 5.27 99.48 0.52 -10.31 16 20 C 0.01 0.54 5.87 86.34 0.51 1.05 16 21 C 0.08 1.60 11.26 83.58 0.94 2.54 16 22 N -0.41 -8.58 3.15 -534.85 -1.68 -10.26 16 23 C 0.06 0.65 10.56 127.77 1.35 2.00 16 24 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 28 H 0.03 1.02 7.69 -2.39 -0.02 1.00 16 29 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.06 2.25 7.74 -2.38 -0.02 2.23 16 31 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.05 2.53 7.20 -2.39 -0.02 2.51 16 33 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.06 2.68 6.82 -2.39 -0.02 2.66 16 35 H 0.05 2.17 7.74 -2.39 -0.02 2.15 16 36 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 1.11 6.15 -2.39 -0.01 1.10 16 Total: -1.00 -76.62 326.51 2.22 -74.41 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.86 Total: 10.31 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 6.73 Total: -11.56 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -7.09 Total: -93.54 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.14 Total: -27.03 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.86 Total: 47.41 kcal Total: -76.62 2.22 -74.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.574 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds