Wall clock time and date at job start Tue Mar 31 2020 00:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47612 * 2 1 4 4 C 1.42902 * 114.00735 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46950 * 59.99708 * 4 3 2 6 6 C 1.53003 * 109.46585 * 299.99969 * 4 3 2 7 7 C 1.50690 * 109.47273 * 179.97438 * 4 3 2 8 8 O 1.21277 * 120.00453 * 0.02562 * 7 4 3 9 9 N 1.34778 * 120.00001 * 179.97438 * 7 4 3 10 10 C 1.39471 * 120.00423 * 184.86935 * 9 7 4 11 11 C 1.38595 * 119.57895 * 182.93155 * 10 9 7 12 12 C 1.40811 * 118.79250 * 179.69929 * 11 10 9 13 13 C 1.41545 * 120.99912 * 180.25482 * 12 11 10 14 14 H 1.07999 * 120.00455 * 154.01370 * 13 12 11 15 15 C 1.40032 * 119.99664 * 334.01303 * 13 12 11 16 16 N 1.30745 * 120.00191 * 163.02820 * 15 13 12 17 17 Si 1.86809 * 120.00084 * 343.02452 * 15 13 12 18 18 H 1.48495 * 109.46776 * 95.20711 * 17 15 13 19 19 H 1.48500 * 109.47136 * 215.20885 * 17 15 13 20 20 H 1.48494 * 109.47047 * 335.20846 * 17 15 13 21 21 C 1.41178 * 118.00746 * 0.28214 * 12 11 10 22 22 C 1.37584 * 119.01531 * 359.97438 * 21 12 11 23 23 N 1.32078 * 121.11144 * 0.02619 * 22 21 12 24 24 H 1.09005 * 109.47175 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47365 * 300.00192 * 1 2 3 26 26 H 1.09004 * 109.46682 * 60.00051 * 1 2 3 27 27 H 1.08997 * 109.47365 * 239.99808 * 2 1 3 28 28 H 1.09005 * 109.47204 * 119.99989 * 2 1 3 29 29 H 1.08997 * 109.47095 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47297 * 300.00289 * 5 4 3 31 31 H 1.08995 * 109.47195 * 60.00394 * 5 4 3 32 32 H 1.08997 * 109.47588 * 299.99814 * 6 4 3 33 33 H 1.09004 * 109.47281 * 59.99944 * 6 4 3 34 34 H 1.08997 * 109.47091 * 179.97438 * 6 4 3 35 35 H 0.97002 * 119.99914 * 4.87534 * 9 7 4 36 36 H 1.07994 * 120.60775 * 359.97438 * 11 10 9 37 37 H 0.97001 * 120.00229 * 179.97438 * 16 15 13 38 38 H 1.08005 * 120.49426 * 179.97438 * 21 12 11 39 39 H 1.08005 * 119.44579 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9957 0.7815 -1.2501 6 6 3.9967 0.7811 1.2484 7 6 3.8195 2.9160 -0.0012 8 8 2.9611 3.7728 -0.0006 9 7 5.1210 3.2662 -0.0013 10 6 5.4818 4.6096 0.1007 11 6 6.8199 4.9652 0.0384 12 6 7.1651 6.3268 0.1367 13 6 8.5166 6.7426 0.0735 14 1 8.7599 7.7384 -0.2666 15 6 9.5382 5.8628 0.4518 16 7 10.7726 6.1013 0.0930 17 14 9.1374 4.3484 1.4695 18 1 8.9557 3.1813 0.5695 19 1 10.2515 4.0771 2.4132 20 1 7.8866 4.5830 2.2346 21 6 6.1228 7.2647 0.3009 22 6 4.8236 6.8156 0.3572 23 7 4.5415 5.5289 0.2610 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.0823 0.8672 -1.2503 30 1 3.7147 -0.2717 -1.2501 31 1 3.5927 1.2651 -2.1398 32 1 3.5943 1.2645 2.1386 33 1 3.7157 -0.2720 1.2484 34 1 5.0833 0.8668 1.2478 35 1 5.8068 2.5839 -0.0723 36 1 7.5837 4.2121 -0.0878 37 1 11.4803 5.4920 0.3554 38 1 6.3420 8.3192 0.3811 39 1 4.0207 7.5272 0.4823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601329914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:57 Heat of formation + Delta-G solvation = -45.022874 kcal Electronic energy + Delta-G solvation = -21823.356070 eV Core-core repulsion = 18538.359479 eV Total energy + Delta-G solvation = -3284.996591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.32455 -38.79910 -37.44349 -34.49257 -33.96612 -33.02719 -31.32901 -30.74391 -28.77662 -27.67343 -26.03621 -24.47717 -22.44822 -22.42021 -20.93154 -19.53880 -17.90738 -17.51856 -16.47652 -15.93363 -15.83050 -15.40757 -14.91912 -14.79916 -14.34778 -14.02252 -13.72646 -13.51815 -13.15117 -12.96312 -12.69776 -12.66889 -12.46094 -12.33769 -12.19290 -12.01026 -11.66132 -11.29847 -11.07132 -10.99089 -10.84962 -10.73013 -10.02705 -9.86394 -9.67416 -9.49814 -9.28546 -8.27055 -7.87647 -7.27153 -7.11610 -4.77037 2.27117 2.60479 2.94443 2.96004 3.04543 3.19080 3.29317 3.83745 3.86128 4.51312 4.52945 4.70173 4.76597 4.92251 5.05286 5.16244 5.22493 5.25875 5.40406 5.47133 5.51259 5.63964 5.73969 5.74588 5.84524 5.97701 5.99790 6.27317 6.33877 6.38194 6.55212 6.91235 7.03588 7.10726 7.24002 7.55764 7.70856 7.99609 8.17038 8.39934 8.61502 8.66530 9.44356 9.89405 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.004785 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.423277 B = 5850.807317 C = 6587.618982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.351 6.351 4 C 0.099 3.901 5 C -0.178 4.178 6 C -0.178 4.178 7 C 0.513 3.487 8 O -0.452 6.452 9 N -0.660 5.660 10 C 0.372 3.628 11 C -0.323 4.323 12 C 0.127 3.873 13 C -0.434 4.434 14 H 0.096 0.904 15 C 0.085 3.915 16 N -0.797 5.797 17 Si 0.917 3.083 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.243 1.243 21 C -0.273 4.273 22 C 0.130 3.870 23 N -0.558 5.558 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.406 0.594 36 H 0.106 0.894 37 H 0.288 0.712 38 H 0.110 0.890 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 -14.468 0.652 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.270 6.270 4 C 0.055 3.945 5 C -0.236 4.236 6 C -0.235 4.235 7 C 0.296 3.704 8 O -0.318 6.318 9 N -0.308 5.308 10 C 0.145 3.855 11 C -0.348 4.348 12 C 0.119 3.881 13 C -0.464 4.464 14 H 0.114 0.886 15 C -0.136 4.136 16 N -0.421 5.421 17 Si 0.744 3.256 18 H -0.198 1.198 19 H -0.218 1.218 20 H -0.166 1.166 21 C -0.297 4.297 22 C -0.022 4.022 23 N -0.277 5.277 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.241 0.759 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.425 -13.985 0.685 17.456 hybrid contribution 1.616 -1.034 0.274 1.938 sum -8.809 -15.018 0.959 17.438 Atomic orbital electron populations 1.21721 0.93599 1.01945 1.03444 1.22567 0.95618 0.84352 1.00179 1.88109 1.18081 1.25844 1.94962 1.21346 0.83328 0.93663 0.96135 1.22433 1.02055 1.01353 0.97749 1.22420 1.02085 1.01244 0.97764 1.19971 0.82883 0.89425 0.78154 1.90804 1.48282 1.50590 1.42172 1.43430 1.07533 1.06801 1.73023 1.17954 0.89401 0.83414 0.94727 1.21127 0.93213 0.97627 1.22848 1.17665 0.93859 0.90069 0.86518 1.19534 0.88304 1.01532 1.36993 0.88638 1.26230 0.94397 0.98856 0.94118 1.69642 1.01624 1.36496 1.34316 0.86230 0.79187 0.80137 0.80005 1.19766 1.21842 1.16630 1.21874 0.93475 0.99551 1.14769 1.21895 0.94737 0.90903 0.94658 1.67308 1.34782 1.01276 1.24370 0.91219 0.91748 0.91746 0.93081 0.93088 0.90813 0.91024 0.90870 0.90899 0.91045 0.90826 0.75923 0.87614 0.90125 0.87188 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.05 0.51 5.86 37.16 0.22 0.72 16 3 O -0.35 -5.25 9.52 -55.14 -0.52 -5.78 16 4 C 0.10 1.37 0.98 -91.78 -0.09 1.28 16 5 C -0.18 -1.92 8.14 37.16 0.30 -1.62 16 6 C -0.18 -1.97 8.15 37.16 0.30 -1.67 16 7 C 0.51 9.71 6.51 -10.99 -0.07 9.64 16 8 O -0.45 -10.69 14.77 -14.35 -0.21 -10.91 16 9 N -0.66 -12.44 5.17 -11.49 -0.06 -12.50 16 10 C 0.37 8.63 7.41 -154.70 -1.15 7.48 16 11 C -0.32 -7.66 7.01 -38.48 -0.27 -7.93 16 12 C 0.13 3.19 5.23 -106.55 -0.56 2.64 16 13 C -0.43 -11.34 9.66 -37.65 -0.36 -11.70 16 14 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 15 C 0.09 2.13 5.45 -17.34 -0.09 2.04 16 16 N -0.80 -20.25 13.92 55.55 0.77 -19.48 16 17 Si 0.92 19.75 24.42 -169.99 -4.15 15.60 16 18 H -0.27 -5.43 6.70 56.52 0.38 -5.05 16 19 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.24 -5.49 6.66 56.52 0.38 -5.11 16 21 C -0.27 -6.40 9.90 -38.70 -0.38 -6.78 16 22 C 0.13 2.98 11.15 -17.68 -0.20 2.78 16 23 N -0.56 -13.76 7.87 -12.52 -0.10 -13.86 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.45 6.41 -51.93 -0.33 0.11 16 28 H 0.05 0.45 6.42 -51.93 -0.33 0.12 16 29 H 0.07 0.70 7.46 -51.93 -0.39 0.31 16 30 H 0.07 0.59 6.54 -51.93 -0.34 0.26 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.61 6.54 -51.93 -0.34 0.27 16 34 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 35 H 0.41 6.13 7.55 -40.82 -0.31 5.82 16 36 H 0.11 2.39 4.23 -52.49 -0.22 2.17 16 37 H 0.29 6.57 8.29 -40.82 -0.34 6.23 16 38 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 39 H 0.13 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 317.89 15.07 4.79 4.79 Total: -1.00 -32.13 317.89 -6.68 -38.81 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.23 Total: 7.43 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.97 Total: -4.10 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.62 Total: -45.84 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.74 Total: -16.68 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.15 Total: 15.60 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.13 -6.68 -38.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601329914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.218 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds