Wall clock time and date at job start Tue Mar 31 2020 00:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47612 * 2 1 4 4 C 1.42902 * 114.00735 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46950 * 59.99708 * 4 3 2 6 6 C 1.53003 * 109.46585 * 299.99969 * 4 3 2 7 7 C 1.50690 * 109.47273 * 179.97438 * 4 3 2 8 8 O 1.21277 * 120.00453 * 0.02562 * 7 4 3 9 9 N 1.34778 * 120.00001 * 179.97438 * 7 4 3 10 10 C 1.39471 * 120.00423 * 184.86935 * 9 7 4 11 11 C 1.38595 * 119.57895 * 182.93155 * 10 9 7 12 12 C 1.40811 * 118.79250 * 179.69929 * 11 10 9 13 13 C 1.41545 * 120.99912 * 180.25482 * 12 11 10 14 14 H 1.07999 * 120.00455 * 154.01370 * 13 12 11 15 15 C 1.40032 * 119.99664 * 334.01303 * 13 12 11 16 16 N 1.30745 * 120.00191 * 163.02820 * 15 13 12 17 17 Si 1.86809 * 120.00084 * 343.02452 * 15 13 12 18 18 H 1.48495 * 109.46776 * 95.20711 * 17 15 13 19 19 H 1.48500 * 109.47136 * 215.20885 * 17 15 13 20 20 H 1.48494 * 109.47047 * 335.20846 * 17 15 13 21 21 C 1.41178 * 118.00746 * 0.28214 * 12 11 10 22 22 C 1.37584 * 119.01531 * 359.97438 * 21 12 11 23 23 N 1.32078 * 121.11144 * 0.02619 * 22 21 12 24 24 H 1.09005 * 109.47175 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47365 * 300.00192 * 1 2 3 26 26 H 1.09004 * 109.46682 * 60.00051 * 1 2 3 27 27 H 1.08997 * 109.47365 * 239.99808 * 2 1 3 28 28 H 1.09005 * 109.47204 * 119.99989 * 2 1 3 29 29 H 1.08997 * 109.47095 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47297 * 300.00289 * 5 4 3 31 31 H 1.08995 * 109.47195 * 60.00394 * 5 4 3 32 32 H 1.08997 * 109.47588 * 299.99814 * 6 4 3 33 33 H 1.09004 * 109.47281 * 59.99944 * 6 4 3 34 34 H 1.08997 * 109.47091 * 179.97438 * 6 4 3 35 35 H 0.97002 * 119.99914 * 4.87534 * 9 7 4 36 36 H 1.07994 * 120.60775 * 359.97438 * 11 10 9 37 37 H 0.97001 * 120.00229 * 179.97438 * 16 15 13 38 38 H 1.08005 * 120.49426 * 179.97438 * 21 12 11 39 39 H 1.08005 * 119.44579 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9957 0.7815 -1.2501 6 6 3.9967 0.7811 1.2484 7 6 3.8195 2.9160 -0.0012 8 8 2.9611 3.7728 -0.0006 9 7 5.1210 3.2662 -0.0013 10 6 5.4818 4.6096 0.1007 11 6 6.8199 4.9652 0.0384 12 6 7.1651 6.3268 0.1367 13 6 8.5166 6.7426 0.0735 14 1 8.7599 7.7384 -0.2666 15 6 9.5382 5.8628 0.4518 16 7 10.7726 6.1013 0.0930 17 14 9.1374 4.3484 1.4695 18 1 8.9557 3.1813 0.5695 19 1 10.2515 4.0771 2.4132 20 1 7.8866 4.5830 2.2346 21 6 6.1228 7.2647 0.3009 22 6 4.8236 6.8156 0.3572 23 7 4.5415 5.5289 0.2610 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.0823 0.8672 -1.2503 30 1 3.7147 -0.2717 -1.2501 31 1 3.5927 1.2651 -2.1398 32 1 3.5943 1.2645 2.1386 33 1 3.7157 -0.2720 1.2484 34 1 5.0833 0.8668 1.2478 35 1 5.8068 2.5839 -0.0723 36 1 7.5837 4.2121 -0.0878 37 1 11.4803 5.4920 0.3554 38 1 6.3420 8.3192 0.3811 39 1 4.0207 7.5272 0.4823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601329914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:57 Heat of formation + Delta-G solvation = -66.139431 kcal Electronic energy + Delta-G solvation = -21824.271752 eV Core-core repulsion = 18538.359479 eV Total energy + Delta-G solvation = -3285.912274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74649 -40.30214 -38.84222 -36.20638 -35.71025 -34.09289 -33.21799 -31.61034 -30.45733 -28.49110 -27.94570 -25.60756 -24.25221 -23.63273 -22.31386 -21.00358 -19.59509 -19.02354 -17.65697 -17.61235 -17.01548 -16.74488 -16.49897 -16.17943 -15.98290 -15.66269 -14.87994 -14.79252 -14.72628 -14.63686 -14.03214 -13.57381 -13.46419 -13.38999 -13.27850 -12.93195 -12.85271 -12.77846 -12.66408 -12.61910 -12.12093 -11.98995 -11.78978 -11.56679 -11.26770 -10.81699 -10.55171 -10.17812 -9.67706 -9.04031 -8.99448 -6.74719 0.50460 0.74966 1.22081 1.38343 1.48433 1.66658 1.73327 2.09214 2.65027 2.81799 3.38706 3.51433 3.66621 3.86003 4.02356 4.18438 4.32654 4.40608 4.44363 4.51910 4.53869 4.56737 4.63756 4.68710 4.72250 4.76672 4.89956 5.01375 5.06354 5.09591 5.18966 5.27049 5.28036 5.47820 5.65877 5.97103 6.12761 6.24254 6.40708 6.51706 6.66085 7.15064 7.66062 8.06284 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.004785 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.423277 B = 5850.807317 C = 6587.618982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.390 6.390 4 C 0.105 3.895 5 C -0.175 4.175 6 C -0.175 4.175 7 C 0.507 3.493 8 O -0.508 6.508 9 N -0.649 5.649 10 C 0.367 3.633 11 C -0.327 4.327 12 C 0.112 3.888 13 C -0.464 4.464 14 H 0.067 0.933 15 C 0.052 3.948 16 N -0.828 5.828 17 Si 0.967 3.033 18 H -0.239 1.239 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.284 4.284 22 C 0.128 3.872 23 N -0.580 5.580 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.424 0.576 36 H 0.120 0.880 37 H 0.300 0.700 38 H 0.121 0.879 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 -18.009 1.005 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 O -0.310 6.310 4 C 0.062 3.938 5 C -0.233 4.233 6 C -0.232 4.232 7 C 0.293 3.707 8 O -0.379 6.379 9 N -0.299 5.299 10 C 0.138 3.862 11 C -0.352 4.352 12 C 0.104 3.896 13 C -0.494 4.494 14 H 0.085 0.915 15 C -0.167 4.167 16 N -0.453 5.453 17 Si 0.790 3.210 18 H -0.164 1.164 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.308 4.308 22 C -0.023 4.023 23 N -0.300 5.300 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.263 0.737 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.635 -17.569 1.018 20.563 hybrid contribution 1.588 0.124 0.137 1.599 sum -9.048 -17.445 1.155 19.685 Atomic orbital electron populations 1.21775 0.93245 1.03503 1.02240 1.22876 0.96022 0.82529 1.01973 1.88070 1.18641 1.28892 1.95361 1.21335 0.83595 0.89857 0.99014 1.22464 1.02849 1.02709 0.95235 1.22454 1.02791 1.02666 0.95312 1.21085 0.81967 0.91634 0.76021 1.90768 1.49632 1.52824 1.44636 1.43431 1.08576 1.05562 1.72284 1.18219 0.89119 0.85037 0.93784 1.21221 0.93886 0.97335 1.22770 1.17870 0.93737 0.91353 0.86647 1.19523 0.89599 1.01025 1.39294 0.91503 1.26922 0.93961 1.01271 0.94513 1.69649 1.02467 1.37984 1.35189 0.85479 0.78484 0.78009 0.79031 1.16407 1.20235 1.18545 1.22069 0.93583 1.00118 1.15000 1.22343 0.95324 0.91106 0.93568 1.67437 1.35673 1.02107 1.24808 0.88234 0.93006 0.92940 0.91098 0.91206 0.89173 0.87708 0.92439 0.92696 0.87646 0.89323 0.73727 0.86300 0.88888 0.86084 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 10.28 71.98 0.74 -1.69 16 2 C 0.04 0.72 5.86 71.98 0.42 1.15 16 3 O -0.39 -11.03 9.52 -129.94 -1.24 -12.26 16 4 C 0.11 2.66 0.98 -11.54 -0.01 2.64 16 5 C -0.18 -3.15 8.14 71.98 0.59 -2.57 16 6 C -0.17 -3.26 8.15 71.98 0.59 -2.68 16 7 C 0.51 18.70 6.51 87.65 0.57 19.27 16 8 O -0.51 -24.28 14.77 16.02 0.24 -24.05 16 9 N -0.65 -23.40 5.17 -308.66 -1.60 -25.00 16 10 C 0.37 16.73 7.41 132.75 0.98 17.71 16 11 C -0.33 -15.27 7.01 22.98 0.16 -15.10 16 12 C 0.11 5.70 5.23 -21.11 -0.11 5.58 16 13 C -0.46 -24.94 9.66 23.52 0.23 -24.71 16 14 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 15 C 0.05 2.59 5.45 85.29 0.47 3.05 16 16 N -0.83 -42.25 13.92 21.84 0.30 -41.94 16 17 Si 0.97 39.18 24.42 68.60 1.68 40.86 16 18 H -0.24 -8.45 6.70 99.48 0.67 -7.78 16 19 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.26 -11.33 6.66 99.48 0.66 -10.66 16 21 C -0.28 -13.47 9.90 22.84 0.23 -13.25 16 22 C 0.13 5.88 11.15 84.50 0.94 6.82 16 23 N -0.58 -28.58 7.87 -193.53 -1.52 -30.11 16 24 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 27 H 0.07 0.94 6.41 -2.39 -0.02 0.93 16 28 H 0.07 0.94 6.42 -2.38 -0.02 0.93 16 29 H 0.09 1.32 7.46 -2.39 -0.02 1.30 16 30 H 0.10 1.20 6.54 -2.38 -0.02 1.19 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.26 6.54 -2.38 -0.02 1.24 16 34 H 0.09 1.38 7.68 -2.39 -0.02 1.36 16 35 H 0.42 11.57 7.55 -92.71 -0.70 10.87 16 36 H 0.12 5.13 4.23 -2.91 -0.01 5.11 16 37 H 0.30 13.53 8.29 -92.71 -0.77 12.76 16 38 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 39 H 0.16 6.12 8.06 -2.91 -0.02 6.10 16 Total: -1.00 -72.28 317.89 3.94 -68.34 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.29 Total: 27.93 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.79 Total: -3.77 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -2.81 Total: -97.05 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.00 Total: -36.31 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.68 Total: 40.86 kcal Total: -72.28 3.94 -68.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601329914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.200 kcal (2) G-P(sol) polarization free energy of solvation -72.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds