Wall clock time and date at job start Tue Mar 31 2020 01:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35924 * 117.00100 * 2 1 4 4 C 1.38546 * 120.09723 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.02826 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.88627 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.46721 * 90.00653 * 6 5 4 8 8 C 1.46897 * 111.00141 * 66.04067 * 7 6 5 9 9 C 1.46904 * 110.99747 * 189.99938 * 7 6 5 10 10 C 1.38393 * 120.22736 * 0.29610 * 5 4 3 11 11 C 1.38092 * 120.18902 * 359.44879 * 10 5 4 12 12 C 1.38936 * 119.97233 * 0.52852 * 11 10 5 13 13 N 1.39573 * 120.11439 * 179.72811 * 12 11 10 14 14 C 1.34782 * 119.99521 * 24.84097 * 13 12 11 15 15 O 1.21758 * 120.00460 * 5.52768 * 14 13 12 16 16 C 1.41817 * 119.99229 * 185.53141 * 14 13 12 17 17 H 1.07996 * 120.00810 * 359.97438 * 16 14 13 18 18 C 1.40139 * 119.99689 * 180.02562 * 16 14 13 19 19 N 1.30635 * 120.00005 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00109 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47033 * 60.00085 * 20 18 16 22 22 H 1.48494 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47301 * 299.99868 * 20 18 16 24 24 H 1.09001 * 109.47009 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46772 * 299.99665 * 1 2 3 26 26 H 1.08997 * 109.47539 * 59.99938 * 1 2 3 27 27 H 1.08007 * 119.98134 * 359.97128 * 4 3 2 28 28 H 1.08996 * 109.47644 * 330.00665 * 6 5 4 29 29 H 1.09000 * 109.47113 * 209.99601 * 6 5 4 30 30 H 1.09003 * 109.46950 * 183.95346 * 8 7 6 31 31 H 1.09008 * 109.47043 * 63.95753 * 8 7 6 32 32 H 1.08990 * 109.47571 * 303.95426 * 8 7 6 33 33 H 1.08997 * 109.47153 * 299.99512 * 9 7 6 34 34 H 1.08998 * 109.47102 * 59.99787 * 9 7 6 35 35 H 1.09001 * 109.46622 * 179.97438 * 9 7 6 36 36 H 1.08001 * 119.90445 * 179.70423 * 10 5 4 37 37 H 1.08007 * 120.01773 * 180.28024 * 11 10 5 38 38 H 0.96994 * 120.00100 * 204.84144 * 13 12 11 39 39 H 0.96996 * 119.99863 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2935 2.3743 0.0005 5 6 1.9226 3.6053 0.0011 6 6 1.1008 4.8685 0.0022 7 7 0.8346 5.2781 1.3877 8 6 2.0761 5.6680 2.0692 9 6 -0.1551 6.3628 1.4350 10 6 3.3044 3.6815 -0.0051 11 6 4.0635 2.5280 -0.0004 12 6 3.4397 1.2865 -0.0005 13 7 4.2041 0.1187 -0.0014 14 6 5.4598 0.1349 0.4882 15 8 5.8921 1.1399 1.0224 16 6 6.2774 -1.0189 0.3810 17 1 5.8939 -1.9105 -0.0926 18 6 7.5828 -1.0024 0.8905 19 7 8.0466 0.0759 1.4637 20 14 8.6596 -2.5223 0.7499 21 1 8.8379 -2.8718 -0.6823 22 1 9.9850 -2.2481 1.3607 23 1 8.0121 -3.6550 1.4590 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2148 2.3193 0.0005 28 1 0.1564 4.6882 -0.5112 29 1 1.6486 5.6587 -0.5112 30 1 1.8606 5.8993 3.1124 31 1 2.4975 6.5472 1.5817 32 1 2.7913 4.8471 2.0193 33 1 0.2223 7.2233 0.8826 34 1 -1.0881 6.0231 0.9855 35 1 -0.3339 6.6463 2.4722 36 1 3.7905 4.6459 -0.0095 37 1 5.1418 2.5907 -0.0006 38 1 3.8317 -0.7044 -0.3544 39 1 8.9502 0.0875 1.8160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601621510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:44 Heat of formation + Delta-G solvation = -38.049080 kcal Electronic energy + Delta-G solvation = -21593.855251 eV Core-core repulsion = 18309.161067 eV Total energy + Delta-G solvation = -3284.694185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -39.92892 -37.84063 -37.76580 -35.90326 -33.49984 -32.38982 -30.16325 -29.48925 -27.54919 -27.36647 -26.90209 -25.25806 -22.45251 -21.67628 -20.84740 -19.73837 -17.65220 -17.11802 -16.13870 -15.79905 -15.51008 -15.24147 -15.18121 -14.89873 -14.71700 -14.09037 -13.50480 -13.37348 -13.15053 -12.70727 -12.49877 -12.26771 -12.14522 -11.97029 -11.65687 -11.57683 -11.38721 -11.28974 -11.06003 -10.91007 -10.66913 -10.56462 -10.46850 -10.33315 -9.31004 -8.83589 -8.31269 -7.96400 -7.57435 -6.70128 -6.33566 -4.85851 1.98233 2.07153 3.09627 3.14663 3.16755 3.70016 3.98207 4.02224 4.37587 4.61164 4.74684 5.00881 5.15019 5.27184 5.29884 5.36644 5.37991 5.46714 5.55423 5.62775 5.67611 5.71283 5.74764 5.77519 5.82986 6.04767 6.15107 6.34727 6.58613 6.79678 6.92016 7.01966 7.07286 7.23113 7.26598 7.49688 7.75879 7.93410 8.10506 8.32180 8.83547 9.35511 10.41547 10.62242 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.004396 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.881716 B = 6368.428165 C = 7312.924006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.319 6.319 3 C 0.056 3.944 4 C -0.160 4.160 5 C -0.103 4.103 6 C 0.105 3.895 7 N -0.543 5.543 8 C 0.019 3.981 9 C 0.025 3.975 10 C -0.122 4.122 11 C -0.113 4.113 12 C 0.179 3.821 13 N -0.689 5.689 14 C 0.544 3.456 15 O -0.567 6.567 16 C -0.537 4.537 17 H 0.070 0.930 18 C 0.089 3.911 19 N -0.748 5.748 20 Si 0.913 3.087 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.082 0.918 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.158 0.842 38 H 0.396 0.604 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.733 6.261 -2.993 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.233 6.233 3 C 0.009 3.991 4 C -0.180 4.180 5 C -0.105 4.105 6 C -0.022 4.022 7 N -0.267 5.267 8 C -0.129 4.129 9 C -0.123 4.123 10 C -0.141 4.141 11 C -0.134 4.134 12 C 0.078 3.922 13 N -0.331 5.331 14 C 0.354 3.646 15 O -0.451 6.451 16 C -0.573 4.573 17 H 0.088 0.912 18 C -0.134 4.134 19 N -0.376 5.376 20 Si 0.737 3.263 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.110 0.890 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.137 0.863 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.176 0.824 38 H 0.229 0.771 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.278 6.405 -2.258 14.914 hybrid contribution 0.301 -0.333 -0.562 0.719 sum -12.977 6.073 -2.820 14.603 Atomic orbital electron populations 1.22892 0.79484 1.02995 1.00779 1.86000 1.20376 1.27011 1.89945 1.18764 0.90789 0.84356 1.05225 1.20592 0.98692 0.91217 1.07533 1.19135 0.93276 0.93210 1.04916 1.20923 0.98555 0.94192 0.88574 1.62007 1.11375 1.37330 1.15952 1.22490 0.91958 1.00081 0.98368 1.22375 0.95909 0.92348 1.01714 1.20792 0.92623 0.97940 1.02762 1.21507 1.02396 0.89375 1.00162 1.17460 0.86513 0.89185 0.99012 1.44015 1.16163 1.08981 1.63950 1.17038 0.78736 0.90047 0.78806 1.90580 1.72079 1.35086 1.47362 1.20043 0.98068 0.99308 1.39837 0.91202 1.25752 0.98026 0.96822 0.92831 1.69999 1.15607 1.26955 1.25005 0.86338 0.78797 0.81769 0.79389 1.19059 1.20373 1.19060 0.88986 0.93124 0.93358 0.86312 0.90732 0.94369 0.91774 0.95909 0.89969 0.95945 0.91635 0.91550 0.87005 0.82427 0.77127 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.41 16 2 O -0.32 -5.58 9.91 -19.50 -0.19 -5.78 16 3 C 0.06 1.07 6.71 -38.97 -0.26 0.81 16 4 C -0.16 -2.67 8.68 -39.47 -0.34 -3.01 16 5 C -0.10 -1.68 4.89 -104.56 -0.51 -2.19 16 6 C 0.10 1.38 5.11 -4.97 -0.03 1.35 16 7 N -0.54 -7.12 5.01 -252.72 -1.27 -8.39 16 8 C 0.02 0.25 9.26 60.06 0.56 0.81 16 9 C 0.02 0.25 9.57 60.07 0.57 0.82 16 10 C -0.12 -2.21 7.90 -39.58 -0.31 -2.52 16 11 C -0.11 -2.50 8.71 -39.38 -0.34 -2.84 16 12 C 0.18 4.00 6.45 -83.58 -0.54 3.46 16 13 N -0.69 -16.55 5.26 -12.30 -0.06 -16.62 16 14 C 0.54 15.41 7.38 -14.89 -0.11 15.30 16 15 O -0.57 -17.66 12.03 5.14 0.06 -17.60 16 16 C -0.54 -14.89 9.32 -37.50 -0.35 -15.24 16 17 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 18 C 0.09 2.39 5.50 -17.35 -0.10 2.30 16 19 N -0.75 -21.60 11.73 55.56 0.65 -20.94 16 20 Si 0.91 19.53 29.56 -169.99 -5.02 14.51 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 26 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 27 H 0.12 1.67 6.30 -52.48 -0.33 1.34 16 28 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 29 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.02 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.08 1.28 5.90 -51.93 -0.31 0.97 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.11 1.81 8.00 -52.49 -0.42 1.39 16 37 H 0.16 3.97 5.78 -52.48 -0.30 3.67 16 38 H 0.40 8.59 8.30 -40.82 -0.34 8.25 16 39 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -32.68 324.74 -7.12 -39.80 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.41 Total: 9.68 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.77 Total: 0.45 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.68 Total: -45.95 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.13 Total: -23.38 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.68 -7.12 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601621510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.750 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds