Wall clock time and date at job start Tue Mar 31 2020 01:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35924 * 117.00100 * 2 1 4 4 C 1.38546 * 120.09723 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.02826 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.88627 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.46721 * 90.00653 * 6 5 4 8 8 C 1.46897 * 111.00141 * 66.04067 * 7 6 5 9 9 C 1.46904 * 110.99747 * 189.99938 * 7 6 5 10 10 C 1.38393 * 120.22736 * 0.29610 * 5 4 3 11 11 C 1.38092 * 120.18902 * 359.44879 * 10 5 4 12 12 C 1.38936 * 119.97233 * 0.52852 * 11 10 5 13 13 N 1.39573 * 120.11439 * 179.72811 * 12 11 10 14 14 C 1.34782 * 119.99521 * 24.84097 * 13 12 11 15 15 O 1.21758 * 120.00460 * 5.52768 * 14 13 12 16 16 C 1.41817 * 119.99229 * 185.53141 * 14 13 12 17 17 H 1.07996 * 120.00810 * 359.97438 * 16 14 13 18 18 C 1.40139 * 119.99689 * 180.02562 * 16 14 13 19 19 N 1.30635 * 120.00005 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00109 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47033 * 60.00085 * 20 18 16 22 22 H 1.48494 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47301 * 299.99868 * 20 18 16 24 24 H 1.09001 * 109.47009 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46772 * 299.99665 * 1 2 3 26 26 H 1.08997 * 109.47539 * 59.99938 * 1 2 3 27 27 H 1.08007 * 119.98134 * 359.97128 * 4 3 2 28 28 H 1.08996 * 109.47644 * 330.00665 * 6 5 4 29 29 H 1.09000 * 109.47113 * 209.99601 * 6 5 4 30 30 H 1.09003 * 109.46950 * 183.95346 * 8 7 6 31 31 H 1.09008 * 109.47043 * 63.95753 * 8 7 6 32 32 H 1.08990 * 109.47571 * 303.95426 * 8 7 6 33 33 H 1.08997 * 109.47153 * 299.99512 * 9 7 6 34 34 H 1.08998 * 109.47102 * 59.99787 * 9 7 6 35 35 H 1.09001 * 109.46622 * 179.97438 * 9 7 6 36 36 H 1.08001 * 119.90445 * 179.70423 * 10 5 4 37 37 H 1.08007 * 120.01773 * 180.28024 * 11 10 5 38 38 H 0.96994 * 120.00100 * 204.84144 * 13 12 11 39 39 H 0.96996 * 119.99863 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2935 2.3743 0.0005 5 6 1.9226 3.6053 0.0011 6 6 1.1008 4.8685 0.0022 7 7 0.8346 5.2781 1.3877 8 6 2.0761 5.6680 2.0692 9 6 -0.1551 6.3628 1.4350 10 6 3.3044 3.6815 -0.0051 11 6 4.0635 2.5280 -0.0004 12 6 3.4397 1.2865 -0.0005 13 7 4.2041 0.1187 -0.0014 14 6 5.4598 0.1349 0.4882 15 8 5.8921 1.1399 1.0224 16 6 6.2774 -1.0189 0.3810 17 1 5.8939 -1.9105 -0.0926 18 6 7.5828 -1.0024 0.8905 19 7 8.0466 0.0759 1.4637 20 14 8.6596 -2.5223 0.7499 21 1 8.8379 -2.8718 -0.6823 22 1 9.9850 -2.2481 1.3607 23 1 8.0121 -3.6550 1.4590 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2148 2.3193 0.0005 28 1 0.1564 4.6882 -0.5112 29 1 1.6486 5.6587 -0.5112 30 1 1.8606 5.8993 3.1124 31 1 2.4975 6.5472 1.5817 32 1 2.7913 4.8471 2.0193 33 1 0.2223 7.2233 0.8826 34 1 -1.0881 6.0231 0.9855 35 1 -0.3339 6.6463 2.4722 36 1 3.7905 4.6459 -0.0095 37 1 5.1418 2.5907 -0.0006 38 1 3.8317 -0.7044 -0.3544 39 1 8.9502 0.0875 1.8160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601621510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:42 Heat of formation + Delta-G solvation = -62.485114 kcal Electronic energy + Delta-G solvation = -21594.914877 eV Core-core repulsion = 18309.161067 eV Total energy + Delta-G solvation = -3285.753810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43037 -39.59627 -38.99943 -37.28457 -35.32311 -34.46373 -31.68814 -30.92186 -28.93620 -28.48625 -28.27884 -26.65586 -23.88505 -23.06444 -22.24222 -21.46232 -19.53447 -18.53793 -17.74754 -17.68589 -16.83262 -16.60359 -16.25751 -15.92227 -15.88178 -15.78995 -15.19879 -14.96799 -14.58551 -14.25049 -14.18736 -13.44678 -13.23026 -13.17060 -13.13420 -12.78190 -12.76556 -12.68272 -12.57301 -12.41972 -12.22551 -12.04667 -11.88682 -11.80247 -11.09813 -10.79518 -9.83106 -9.34652 -9.27847 -8.39010 -8.37546 -7.00789 0.47753 0.57110 1.39019 1.42068 1.54630 2.21256 2.34794 2.44632 2.79167 3.01697 3.30931 3.65965 3.83352 4.02481 4.20660 4.33567 4.34814 4.37218 4.48023 4.48579 4.61645 4.64530 4.75146 4.77358 4.81565 4.85442 5.05525 5.06301 5.08175 5.20269 5.29482 5.43366 5.69868 5.87574 5.92305 6.06474 6.16309 6.17768 6.23792 6.67652 6.73370 7.40072 8.38236 8.56437 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.004396 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.881716 B = 6368.428165 C = 7312.924006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.339 6.339 3 C 0.066 3.934 4 C -0.155 4.155 5 C -0.084 4.084 6 C 0.107 3.893 7 N -0.558 5.558 8 C 0.020 3.980 9 C 0.025 3.975 10 C -0.123 4.123 11 C -0.136 4.136 12 C 0.131 3.869 13 N -0.688 5.688 14 C 0.529 3.471 15 O -0.610 6.610 16 C -0.567 4.567 17 H 0.087 0.913 18 C 0.033 3.967 19 N -0.800 5.800 20 Si 1.003 2.997 21 H -0.253 1.253 22 H -0.270 1.270 23 H -0.254 1.254 24 H 0.117 0.883 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.156 0.844 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.403 0.597 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.406 6.124 -3.533 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.254 6.254 3 C 0.019 3.981 4 C -0.175 4.175 5 C -0.086 4.086 6 C -0.020 4.020 7 N -0.282 5.282 8 C -0.128 4.128 9 C -0.122 4.122 10 C -0.143 4.143 11 C -0.157 4.157 12 C 0.033 3.967 13 N -0.330 5.330 14 C 0.339 3.661 15 O -0.497 6.497 16 C -0.602 4.602 17 H 0.105 0.895 18 C -0.185 4.185 19 N -0.428 5.428 20 Si 0.821 3.179 21 H -0.177 1.177 22 H -0.194 1.194 23 H -0.178 1.178 24 H 0.135 0.865 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.174 0.826 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.237 0.763 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.028 6.286 -2.819 17.446 hybrid contribution 0.913 -0.171 -0.398 1.010 sum -15.116 6.115 -3.217 16.620 Atomic orbital electron populations 1.23294 0.76421 1.05286 1.02145 1.85982 1.23485 1.26305 1.89608 1.18765 0.89675 0.85974 1.03735 1.20992 1.00337 0.90168 1.05970 1.19558 0.92584 0.95021 1.01419 1.20974 0.99258 0.92505 0.89305 1.61974 1.11567 1.39119 1.15525 1.22431 0.91776 0.99241 0.99361 1.22443 0.95473 0.91656 1.02635 1.20889 0.93713 0.97056 1.02597 1.21220 1.00707 0.91284 1.02491 1.17711 0.88216 0.88409 1.02398 1.43571 1.15301 1.10069 1.64089 1.17410 0.80125 0.89878 0.78720 1.90545 1.73529 1.36398 1.49275 1.20568 0.99162 0.99814 1.40682 0.89484 1.27021 0.99308 1.00710 0.91494 1.70153 1.16498 1.29991 1.26158 0.84999 0.76350 0.76508 0.80040 1.17722 1.19440 1.17797 0.86507 0.92221 0.91275 0.82633 0.88047 0.93400 0.90808 0.94821 0.93057 0.95049 0.90064 0.90826 0.85658 0.86852 0.76293 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.34 -11.47 9.91 -92.70 -0.92 -12.39 16 3 C 0.07 2.51 6.71 22.66 0.15 2.66 16 4 C -0.16 -4.80 8.68 22.34 0.19 -4.60 16 5 C -0.08 -2.59 4.89 -19.83 -0.10 -2.69 16 6 C 0.11 2.44 5.11 85.56 0.44 2.87 16 7 N -0.56 -12.89 5.01 -953.46 -4.78 -17.66 16 8 C 0.02 0.50 9.26 127.69 1.18 1.68 16 9 C 0.03 0.41 9.57 127.69 1.22 1.63 16 10 C -0.12 -4.58 7.90 22.27 0.18 -4.40 16 11 C -0.14 -6.42 8.71 22.40 0.20 -6.22 16 12 C 0.13 6.15 6.45 38.40 0.25 6.39 16 13 N -0.69 -34.98 5.26 -311.03 -1.64 -36.62 16 14 C 0.53 31.93 7.38 85.13 0.63 32.56 16 15 O -0.61 -41.02 12.03 -4.54 -0.05 -41.07 16 16 C -0.57 -32.72 9.32 23.62 0.22 -32.50 16 17 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 18 C 0.03 1.83 5.50 85.33 0.47 2.30 16 19 N -0.80 -48.37 11.73 21.85 0.26 -48.11 16 20 Si 1.00 40.52 29.56 68.60 2.03 42.55 16 21 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 22 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 24 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 26 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 27 H 0.16 3.65 6.30 -2.91 -0.02 3.63 16 28 H 0.10 1.83 8.00 -2.39 -0.02 1.82 16 29 H 0.05 1.03 8.06 -2.39 -0.02 1.01 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.05 1.59 5.90 -2.39 -0.01 1.58 16 33 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.13 4.17 8.00 -2.91 -0.02 4.15 16 37 H 0.11 6.36 5.78 -2.91 -0.02 6.34 16 38 H 0.40 18.38 8.30 -92.71 -0.77 17.61 16 39 H 0.28 15.21 8.29 -92.71 -0.77 14.44 16 Total: -1.00 -76.83 324.74 1.33 -75.49 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.30 Total: 36.53 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 6.14 Total: 1.27 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -6.16 Total: -102.39 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -0.97 Total: -53.46 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -76.83 1.33 -75.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601621510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.008 kcal (2) G-P(sol) polarization free energy of solvation -76.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds