Wall clock time and date at job start Tue Mar 31 2020 01:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45195 * 109.47137 * 2 1 4 4 C 1.34730 * 116.99913 * 179.97438 * 3 2 1 5 5 O 1.21489 * 120.00341 * 359.97438 * 4 3 2 6 6 C 1.47586 * 119.99935 * 179.97438 * 4 3 2 7 7 N 1.32252 * 126.68710 * 0.26569 * 6 4 3 8 8 N 1.28846 * 110.14511 * 180.12168 * 7 6 4 9 9 C 1.46491 * 124.97397 * 179.82850 * 8 7 6 10 10 C 1.50702 * 109.46957 * 269.69434 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.34327 * 110.04656 * 359.56428 * 8 7 6 19 19 C 1.35562 * 107.23248 * 0.33908 * 18 8 7 20 20 C 1.50371 * 124.62612 * 179.84386 * 19 18 8 21 21 C 1.53479 * 108.28879 * 343.76103 * 20 19 18 22 22 C 1.53110 * 109.50453 * 49.48228 * 21 20 19 23 23 C 1.50714 * 128.89127 * 180.45092 * 18 8 7 24 24 H 1.08999 * 109.47154 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47252 * 300.00242 * 1 2 3 26 26 H 1.08998 * 109.46563 * 60.00498 * 1 2 3 27 27 H 1.08999 * 109.47389 * 239.99224 * 2 1 3 28 28 H 1.09010 * 109.46998 * 119.99531 * 2 1 3 29 29 H 1.09004 * 109.47166 * 149.69700 * 9 8 7 30 30 H 1.08994 * 109.47507 * 29.69406 * 9 8 7 31 31 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.70312 * 224.06565 * 20 19 18 33 33 H 1.09002 * 109.73714 * 103.47755 * 20 19 18 34 34 H 1.09000 * 109.46555 * 289.47646 * 21 20 19 35 35 H 1.08991 * 109.46923 * 169.49277 * 21 20 19 36 36 H 1.08995 * 109.44038 * 169.90228 * 22 21 20 37 37 H 1.08996 * 109.41074 * 49.98725 * 22 21 20 38 38 H 1.08994 * 109.69377 * 282.94928 * 23 18 8 39 39 H 1.08998 * 109.69043 * 43.53219 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3497 1.5454 0.0005 5 8 4.0898 0.5820 0.0015 6 6 3.9138 2.9092 0.0000 7 7 3.2358 4.0447 0.0039 8 7 4.0469 5.0458 -0.0006 9 6 3.6428 6.4539 -0.0017 10 6 3.5068 6.9363 -1.4230 11 1 3.7015 6.2613 -2.2433 12 6 3.1278 8.2376 -1.6761 13 7 3.0038 8.6570 -2.9164 14 14 2.7904 9.4049 -0.2572 15 1 4.0453 10.1053 0.1166 16 1 1.7704 10.4026 -0.6690 17 1 2.2872 8.6347 0.9084 18 6 5.3172 4.6093 0.0019 19 6 5.2762 3.2543 0.0005 20 6 6.4872 2.3628 -0.0010 21 6 7.7043 3.2044 -0.4083 22 6 7.7426 4.4862 0.4283 23 6 6.5934 5.4111 0.0077 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 4.3971 7.0489 0.5132 30 1 2.6862 6.5579 0.5103 31 1 2.7375 9.5726 -3.0944 32 1 6.3456 1.5518 -0.7154 33 1 6.6424 1.9510 0.9963 34 1 7.6304 3.4624 -1.4647 35 1 8.6157 2.6317 -0.2372 36 1 8.6938 4.9943 0.2701 37 1 7.6373 4.2334 1.4833 38 1 6.7848 5.8040 -0.9908 39 1 6.5065 6.2345 0.7165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:11 Heat of formation + Delta-G solvation = -29.976861 kcal Electronic energy + Delta-G solvation = -21822.536126 eV Core-core repulsion = 18538.191979 eV Total energy + Delta-G solvation = -3284.344147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.26814 -39.82660 -36.69280 -36.22713 -34.01127 -32.34543 -31.58001 -30.01953 -29.44385 -28.04063 -24.71035 -23.46282 -22.93442 -22.02283 -21.17477 -19.79976 -18.72924 -17.36554 -16.95567 -16.60511 -16.35968 -15.51403 -15.28903 -14.35516 -14.17795 -13.76636 -13.48906 -13.45260 -13.33117 -13.04326 -12.90663 -12.61757 -12.47188 -12.11402 -11.85527 -11.80417 -11.52960 -11.25227 -10.89033 -10.69289 -10.65940 -10.49901 -10.38406 -10.33888 -10.20323 -10.00963 -9.81351 -8.89450 -8.44733 -8.04082 -6.37214 -4.42898 1.83250 2.65075 2.78989 3.07316 3.15060 3.16342 3.43401 3.63012 4.11780 4.77307 4.87992 4.95023 4.95785 5.01395 5.08365 5.11145 5.27723 5.41679 5.49959 5.55556 5.76220 5.78884 5.80524 5.82863 5.95328 5.99588 6.09099 6.15850 6.27486 6.30749 6.33653 6.48183 6.54374 6.56597 6.67569 6.96160 7.10487 7.45927 8.03655 8.14344 8.62446 8.69271 9.15737 10.74832 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.006078 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.953000 B = 4605.817681 C = 6247.569335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.343 6.343 4 C 0.565 3.435 5 O -0.513 6.513 6 C -0.033 4.033 7 N -0.229 5.229 8 N -0.222 5.222 9 C 0.216 3.784 10 C -0.547 4.547 11 H 0.083 0.917 12 C 0.084 3.916 13 N -0.881 5.881 14 Si 0.872 3.128 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.019 3.981 19 C -0.159 4.159 20 C -0.035 4.035 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.045 4.045 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.271 0.729 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 -10.786 7.639 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.259 6.259 4 C 0.409 3.591 5 O -0.400 6.400 6 C -0.186 4.186 7 N -0.069 5.069 8 N -0.010 5.010 9 C 0.098 3.902 10 C -0.585 4.585 11 H 0.101 0.899 12 C -0.121 4.121 13 N -0.517 5.517 14 Si 0.697 3.303 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.108 4.108 19 C -0.169 4.169 20 C -0.074 4.074 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.084 4.084 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.124 -10.399 7.517 13.206 hybrid contribution 0.319 0.392 0.465 0.687 sum 3.443 -10.007 7.982 13.255 Atomic orbital electron populations 1.21792 0.92756 1.02551 1.03814 1.22995 0.95349 0.80553 1.02320 1.86691 1.23725 1.31514 1.83979 1.19619 0.80201 0.87412 0.71846 1.90781 1.60592 1.41211 1.47384 1.20110 0.91490 0.90075 1.16966 1.73973 1.22116 0.93654 1.17153 1.45750 1.02691 1.07885 1.44670 1.20380 0.97891 0.71133 1.00835 1.21008 1.49783 0.98054 0.89654 0.89874 1.24762 0.93996 0.97503 0.95887 1.69855 1.45424 1.17733 1.18644 0.86917 0.79184 0.81491 0.82695 1.19448 1.20267 1.18710 1.21021 0.88261 0.93614 1.07874 1.19639 0.93325 0.92907 1.11041 1.19886 0.89826 0.95960 1.01681 1.21652 0.97612 0.96088 1.00405 1.21559 0.97477 0.95845 1.00129 1.20166 0.88438 0.96514 1.03270 0.90485 0.91458 0.91306 0.91337 0.91418 0.92925 0.92296 0.91878 0.90563 0.91327 0.91574 0.91694 0.91233 0.91757 0.89348 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.34 -6.08 10.23 -40.57 -0.42 -6.49 16 4 C 0.57 10.90 7.97 34.54 0.28 11.18 16 5 O -0.51 -9.84 15.59 -19.26 -0.30 -10.14 16 6 C -0.03 -0.70 7.16 -83.00 -0.59 -1.29 16 7 N -0.23 -5.25 12.02 33.27 0.40 -4.85 16 8 N -0.22 -4.94 3.27 -58.40 -0.19 -5.14 16 9 C 0.22 4.92 4.96 -5.20 -0.03 4.90 16 10 C -0.55 -14.71 9.94 -34.44 -0.34 -15.05 16 11 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 12 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 13 N -0.88 -25.36 13.96 55.43 0.77 -24.59 16 14 Si 0.87 19.30 27.47 -169.99 -4.67 14.63 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 17 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 18 C 0.02 0.36 6.71 -82.45 -0.55 -0.19 16 19 C -0.16 -3.03 5.99 -104.87 -0.63 -3.65 16 20 C -0.04 -0.54 5.54 -27.79 -0.15 -0.70 16 21 C -0.12 -1.53 5.91 -26.43 -0.16 -1.69 16 22 C -0.11 -1.39 5.89 -26.46 -0.16 -1.54 16 23 C -0.05 -0.71 5.90 -27.67 -0.16 -0.87 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 30 H 0.06 1.35 7.19 -51.93 -0.37 0.97 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.08 1.21 7.68 -51.93 -0.40 0.81 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.12 7.73 -51.93 -0.40 0.72 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -30.88 326.63 -7.23 -38.11 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.77 Total: 0.42 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.98 Total: -6.89 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.98 Total: -34.57 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.72 Total: -16.63 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.88 -7.23 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.137 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds