Wall clock time and date at job start Tue Mar 31 2020 01:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45195 * 109.47137 * 2 1 4 4 C 1.34730 * 116.99913 * 179.97438 * 3 2 1 5 5 O 1.21489 * 120.00341 * 359.97438 * 4 3 2 6 6 C 1.47586 * 119.99935 * 179.97438 * 4 3 2 7 7 N 1.32252 * 126.68710 * 0.26569 * 6 4 3 8 8 N 1.28846 * 110.14511 * 180.12168 * 7 6 4 9 9 C 1.46491 * 124.97397 * 179.82850 * 8 7 6 10 10 C 1.50702 * 109.46957 * 269.69434 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.34327 * 110.04656 * 359.56428 * 8 7 6 19 19 C 1.35562 * 107.23248 * 0.33908 * 18 8 7 20 20 C 1.50371 * 124.62612 * 179.84386 * 19 18 8 21 21 C 1.53479 * 108.28879 * 343.76103 * 20 19 18 22 22 C 1.53110 * 109.50453 * 49.48228 * 21 20 19 23 23 C 1.50714 * 128.89127 * 180.45092 * 18 8 7 24 24 H 1.08999 * 109.47154 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47252 * 300.00242 * 1 2 3 26 26 H 1.08998 * 109.46563 * 60.00498 * 1 2 3 27 27 H 1.08999 * 109.47389 * 239.99224 * 2 1 3 28 28 H 1.09010 * 109.46998 * 119.99531 * 2 1 3 29 29 H 1.09004 * 109.47166 * 149.69700 * 9 8 7 30 30 H 1.08994 * 109.47507 * 29.69406 * 9 8 7 31 31 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.70312 * 224.06565 * 20 19 18 33 33 H 1.09002 * 109.73714 * 103.47755 * 20 19 18 34 34 H 1.09000 * 109.46555 * 289.47646 * 21 20 19 35 35 H 1.08991 * 109.46923 * 169.49277 * 21 20 19 36 36 H 1.08995 * 109.44038 * 169.90228 * 22 21 20 37 37 H 1.08996 * 109.41074 * 49.98725 * 22 21 20 38 38 H 1.08994 * 109.69377 * 282.94928 * 23 18 8 39 39 H 1.08998 * 109.69043 * 43.53219 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3497 1.5454 0.0005 5 8 4.0898 0.5820 0.0015 6 6 3.9138 2.9092 0.0000 7 7 3.2358 4.0447 0.0039 8 7 4.0469 5.0458 -0.0006 9 6 3.6428 6.4539 -0.0017 10 6 3.5068 6.9363 -1.4230 11 1 3.7015 6.2613 -2.2433 12 6 3.1278 8.2376 -1.6761 13 7 3.0038 8.6570 -2.9164 14 14 2.7904 9.4049 -0.2572 15 1 4.0453 10.1053 0.1166 16 1 1.7704 10.4026 -0.6690 17 1 2.2872 8.6347 0.9084 18 6 5.3172 4.6093 0.0019 19 6 5.2762 3.2543 0.0005 20 6 6.4872 2.3628 -0.0010 21 6 7.7043 3.2044 -0.4083 22 6 7.7426 4.4862 0.4283 23 6 6.5934 5.4111 0.0077 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 4.3971 7.0489 0.5132 30 1 2.6862 6.5579 0.5103 31 1 2.7375 9.5726 -3.0944 32 1 6.3456 1.5518 -0.7154 33 1 6.6424 1.9510 0.9963 34 1 7.6304 3.4624 -1.4647 35 1 8.6157 2.6317 -0.2372 36 1 8.6938 4.9943 0.2701 37 1 7.6373 4.2334 1.4833 38 1 6.7848 5.8040 -0.9908 39 1 6.5065 6.2345 0.7165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:11 Heat of formation + Delta-G solvation = -48.243285 kcal Electronic energy + Delta-G solvation = -21823.328218 eV Core-core repulsion = 18538.191979 eV Total energy + Delta-G solvation = -3285.136238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.82724 -41.24989 -37.96263 -37.56200 -35.84003 -34.16513 -32.62013 -31.44448 -30.82590 -29.70094 -26.33952 -24.81964 -24.22741 -23.25570 -22.64464 -21.29702 -20.07886 -19.37436 -18.34603 -18.10230 -17.70635 -17.15111 -16.83532 -15.91755 -15.54602 -15.04586 -14.78848 -14.72990 -14.62940 -14.47122 -14.34062 -14.00324 -13.73372 -13.55988 -13.24816 -12.96708 -12.89810 -12.57592 -12.53155 -12.13784 -11.99379 -11.86836 -11.76049 -11.65546 -11.58030 -11.55278 -11.30792 -10.92679 -10.10190 -9.54832 -8.44350 -6.57938 0.26917 1.12354 1.33718 1.34806 1.42076 1.48084 1.91363 2.08124 2.24323 2.87801 3.40923 3.58575 3.87523 3.99525 4.05295 4.05353 4.12562 4.27986 4.31211 4.32976 4.41923 4.59659 4.66093 4.69346 4.74981 4.85165 4.89649 5.00581 5.05072 5.09829 5.11769 5.19614 5.25382 5.32454 5.38294 5.48628 5.52623 5.80687 6.13113 6.44660 6.58268 7.03944 7.08004 8.72061 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.006078 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.953000 B = 4605.817681 C = 6247.569335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.565 3.435 5 O -0.515 6.515 6 C -0.048 4.048 7 N -0.271 5.271 8 N -0.242 5.242 9 C 0.223 3.777 10 C -0.556 4.556 11 H 0.025 0.975 12 C 0.028 3.972 13 N -0.933 5.933 14 Si 0.949 3.051 15 H -0.247 1.247 16 H -0.278 1.278 17 H -0.243 1.243 18 C 0.013 3.987 19 C -0.165 4.165 20 C -0.034 4.034 21 C -0.116 4.116 22 C -0.104 4.104 23 C -0.049 4.049 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.276 0.724 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -10.900 9.946 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.409 3.591 5 O -0.403 6.403 6 C -0.201 4.201 7 N -0.110 5.110 8 N -0.029 5.029 9 C 0.105 3.895 10 C -0.594 4.594 11 H 0.044 0.956 12 C -0.173 4.173 13 N -0.570 5.570 14 Si 0.769 3.231 15 H -0.170 1.170 16 H -0.204 1.204 17 H -0.166 1.166 18 C -0.113 4.113 19 C -0.175 4.175 20 C -0.072 4.072 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.088 4.088 24 H 0.129 0.871 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.375 -10.546 9.829 15.065 hybrid contribution -0.112 0.271 -0.363 0.467 sum 4.263 -10.275 9.466 14.606 Atomic orbital electron populations 1.21838 0.90490 1.04611 1.03368 1.23433 0.97132 0.78453 1.03157 1.86681 1.22741 1.34514 1.83500 1.19482 0.80856 0.86845 0.71915 1.90756 1.60835 1.41029 1.47701 1.20644 0.92696 0.90422 1.16339 1.73880 1.23435 0.94503 1.19198 1.45712 1.03756 1.07457 1.46009 1.20203 0.98953 0.72187 0.98176 1.21056 1.50196 0.97660 0.90468 0.95611 1.25786 0.93111 0.99340 0.99083 1.70016 1.46801 1.18613 1.21615 0.85713 0.79876 0.78601 0.78915 1.17049 1.20361 1.16632 1.21785 0.88475 0.94481 1.06571 1.20193 0.93835 0.93457 1.10023 1.20008 0.89395 0.95526 1.02278 1.21669 0.97576 0.96385 0.99756 1.21576 0.97218 0.94962 1.00422 1.20406 0.87784 0.97393 1.03176 0.87093 0.91554 0.92078 0.90835 0.90239 0.89826 0.92247 0.91516 0.91396 0.89979 0.92732 0.88360 0.88159 0.90692 0.90456 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 10.29 71.98 0.74 -2.04 16 2 C 0.05 1.29 6.19 71.98 0.45 1.74 16 3 O -0.36 -12.88 10.23 -56.40 -0.58 -13.46 16 4 C 0.57 22.13 7.97 70.29 0.56 22.69 16 5 O -0.52 -19.71 15.59 19.87 0.31 -19.40 16 6 C -0.05 -2.04 7.16 42.11 0.30 -1.73 16 7 N -0.27 -12.83 12.02 -48.66 -0.58 -13.41 16 8 N -0.24 -10.97 3.27 -338.67 -1.11 -12.08 16 9 C 0.22 10.22 4.96 85.64 0.42 10.64 16 10 C -0.56 -30.98 9.94 25.60 0.25 -30.72 16 11 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 12 C 0.03 1.50 5.47 84.66 0.46 1.96 16 13 N -0.93 -55.46 13.96 21.45 0.30 -55.17 16 14 Si 0.95 39.14 27.47 68.60 1.88 41.02 16 15 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 16 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 17 H -0.24 -9.21 6.54 99.48 0.65 -8.55 16 18 C 0.01 0.51 6.71 41.56 0.28 0.79 16 19 C -0.17 -6.28 5.99 -20.02 -0.12 -6.40 16 20 C -0.03 -1.00 5.54 29.91 0.17 -0.83 16 21 C -0.12 -2.67 5.91 30.79 0.18 -2.49 16 22 C -0.10 -2.24 5.89 30.77 0.18 -2.05 16 23 C -0.05 -1.46 5.90 29.99 0.18 -1.28 16 24 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.08 3.29 6.95 -2.38 -0.02 3.27 16 30 H 0.06 2.69 7.19 -2.39 -0.02 2.67 16 31 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.07 2.10 7.68 -2.39 -0.02 2.08 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.38 8.12 -2.39 -0.02 1.36 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.50 8.11 -2.39 -0.02 1.48 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.09 2.43 7.73 -2.39 -0.02 2.42 16 Total: -1.00 -70.97 326.63 5.27 -65.70 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.99 Total: 16.52 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 4.06 Total: -9.73 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.39 Total: -80.66 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.27 Total: -32.86 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.88 Total: 41.02 kcal Total: -70.97 5.27 -65.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.458 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds