Wall clock time and date at job start Tue Mar 31 2020 00:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46909 * 109.47152 * 2 1 4 4 C 1.46903 * 110.99950 * 164.09674 * 3 2 1 5 5 C 1.50699 * 109.47075 * 293.95043 * 4 3 2 6 6 H 1.08008 * 119.99801 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00279 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99796 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00353 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46848 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47327 * 119.99753 * 9 7 5 12 12 H 1.48496 * 109.47052 * 240.00338 * 9 7 5 13 13 C 1.46897 * 110.99563 * 288.04872 * 3 2 1 14 14 C 1.50704 * 109.47121 * 160.03890 * 13 3 2 15 15 C 1.38193 * 119.54076 * 95.04284 * 14 13 3 16 16 C 1.38956 * 118.91572 * 179.97438 * 15 14 13 17 17 C 1.39319 * 118.56263 * 359.95178 * 16 15 14 18 18 C 1.38405 * 119.04898 * 0.11420 * 17 16 15 19 19 N 1.31894 * 119.53344 * 274.77427 * 14 13 3 20 20 O 1.35938 * 120.73172 * 180.19195 * 17 16 15 21 21 C 1.43250 * 116.55300 * 342.76609 * 20 17 16 22 22 C 1.53457 * 108.35545 * 46.19411 * 21 20 17 23 23 O 1.35633 * 120.40057 * 179.83514 * 16 15 14 24 24 H 1.09009 * 109.47036 * 59.18892 * 1 2 3 25 25 H 1.09000 * 109.47591 * 179.18847 * 1 2 3 26 26 H 1.08996 * 109.47227 * 299.19431 * 1 2 3 27 27 H 1.08996 * 109.47299 * 240.00030 * 2 1 3 28 28 H 1.09002 * 109.46925 * 119.99505 * 2 1 3 29 29 H 1.09003 * 109.46947 * 53.95189 * 4 3 2 30 30 H 1.08995 * 109.47245 * 173.95282 * 4 3 2 31 31 H 0.96996 * 119.99800 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47311 * 280.02983 * 13 3 2 33 33 H 1.08992 * 109.47829 * 40.03500 * 13 3 2 34 34 H 1.08000 * 120.54089 * 359.97198 * 15 14 13 35 35 H 1.07993 * 119.72329 * 179.90798 * 18 17 16 36 36 H 1.08995 * 109.68554 * 286.47954 * 21 20 17 37 37 H 1.09000 * 109.71665 * 165.92603 * 21 20 17 38 38 H 1.09002 * 109.68671 * 180.58651 * 22 21 20 39 39 H 1.09002 * 109.72425 * 60.02296 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4387 1.4417 0.3758 5 6 3.5963 1.0058 1.8097 6 1 2.7291 0.7152 2.3843 7 6 4.8476 0.9778 2.3882 8 7 5.9036 1.3311 1.6884 9 14 5.0431 0.4368 4.1654 10 1 3.7124 0.0914 4.7269 11 1 5.9293 -0.7533 4.2259 12 1 5.6430 1.5414 4.9559 13 6 1.7945 2.0229 -1.3040 14 6 1.8381 3.5209 -1.1446 15 6 3.0186 4.1976 -1.3855 16 6 3.0440 5.5788 -1.2352 17 6 1.8741 6.2283 -0.8473 18 6 0.7321 5.4791 -0.6236 19 7 0.7475 4.1682 -0.7824 20 8 1.8482 7.5784 -0.6909 21 6 3.1162 8.2329 -0.5654 22 6 4.0519 7.6862 -1.6519 23 8 4.1873 6.2729 -1.4606 24 1 -0.3633 0.5264 -0.8827 25 1 -0.3634 -1.0275 -0.0146 26 1 -0.3633 0.5012 0.8971 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 4.0126 0.7781 -0.2710 30 1 3.8036 2.4627 0.2643 31 1 6.7837 1.3118 2.0955 32 1 2.5715 1.7091 -2.0010 33 1 0.8191 1.7268 -1.6898 34 1 3.9070 3.6618 -1.6857 35 1 -0.1804 5.9711 -0.3211 36 1 3.5383 8.0300 0.4188 37 1 2.9899 9.3076 -0.6963 38 1 5.0285 8.1632 -1.5695 39 1 3.6280 7.8847 -2.6364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602438092.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:50 Heat of formation + Delta-G solvation = -53.042755 kcal Electronic energy + Delta-G solvation = -21915.412410 eV Core-core repulsion = 18630.068051 eV Total energy + Delta-G solvation = -3285.344359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.25 seconds Orbital eigenvalues (eV) -42.53825 -40.18097 -38.46588 -38.23680 -34.78594 -33.08592 -32.95789 -31.29285 -30.29854 -28.93922 -26.91246 -25.30616 -24.56608 -24.12284 -22.17409 -21.26797 -19.77098 -18.84830 -18.52168 -18.32719 -16.85581 -16.74897 -16.40018 -16.07068 -15.93001 -15.82764 -15.53793 -15.27028 -15.20440 -14.54965 -14.34161 -14.21043 -13.89852 -13.43262 -13.05185 -12.87764 -12.81711 -12.56988 -12.52108 -12.31407 -12.08808 -11.86209 -11.70563 -11.56429 -11.19495 -10.64598 -10.61277 -10.07056 -9.39136 -8.97419 -8.19617 -6.28260 0.00304 0.16643 1.38686 1.39305 1.53094 1.88719 2.13772 2.39581 2.62403 3.10303 3.12983 3.34342 3.48745 3.54188 3.87293 3.90572 4.03610 4.11054 4.26227 4.36415 4.45197 4.53233 4.56082 4.61217 4.70949 4.73173 4.80488 4.88058 5.09503 5.16277 5.21904 5.27989 5.39724 5.52383 5.66982 5.72827 6.08217 6.18752 6.39436 6.64057 6.87897 6.99684 7.40462 8.91411 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.005724 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.641482 B = 4890.205134 C = 6080.738837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 N -0.537 5.537 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.281 1.281 13 C 0.105 3.895 14 C 0.144 3.856 15 C -0.172 4.172 16 C 0.086 3.914 17 C -0.011 4.011 18 C 0.107 3.893 19 N -0.468 5.468 20 O -0.305 6.305 21 C 0.013 3.987 22 C 0.010 3.990 23 O -0.322 6.322 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.027 0.973 28 H 0.062 0.938 29 H -0.036 1.036 30 H 0.009 0.991 31 H 0.263 0.737 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.194 0.806 36 H 0.072 0.928 37 H 0.168 0.832 38 H 0.155 0.845 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 12.313 -7.812 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.072 4.072 3 N -0.262 5.262 4 C 0.080 3.920 5 C -0.558 4.558 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.207 1.207 13 C -0.023 4.023 14 C 0.006 3.994 15 C -0.194 4.194 16 C 0.032 3.968 17 C -0.059 4.059 18 C -0.052 4.052 19 N -0.181 5.181 20 O -0.219 6.219 21 C -0.062 4.062 22 C -0.064 4.064 23 O -0.235 6.235 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.081 0.919 29 H -0.018 1.018 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.148 0.852 35 H 0.210 0.790 36 H 0.090 0.910 37 H 0.185 0.815 38 H 0.173 0.827 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.061 12.191 -7.322 16.347 hybrid contribution 2.223 -0.076 0.129 2.228 sum -5.838 12.115 -7.192 15.250 Atomic orbital electron populations 1.21698 0.93332 1.01841 1.01971 1.22024 0.96690 0.88255 1.00204 1.61965 1.19874 1.17779 1.26570 1.19450 0.83124 0.94727 0.94748 1.21485 0.92932 1.43708 0.97675 0.92204 1.25863 0.95500 0.95613 1.02590 1.70093 0.99095 1.49642 1.38454 0.85398 0.78388 0.77901 0.79344 1.18829 1.20131 1.20687 1.20920 1.02461 0.87656 0.91285 1.20950 0.87707 0.96624 0.94076 1.21397 1.00166 0.91859 1.05934 1.19132 0.86751 0.92274 0.98619 1.19964 0.95539 0.85428 1.05003 1.22644 0.97419 0.88070 0.97019 1.67572 1.29250 1.08480 1.12758 1.86259 1.32274 1.14704 1.88662 1.24015 0.82397 1.00525 0.99215 1.24138 1.05021 0.77288 0.99938 1.86267 1.27728 1.23025 1.86527 0.92147 0.90738 0.93306 0.95467 0.91933 1.01841 0.97263 0.92834 0.93750 0.87638 0.85208 0.78972 0.90979 0.81472 0.82709 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.99 71.98 0.72 -3.32 16 2 C 0.06 2.20 5.52 86.30 0.48 2.67 16 3 N -0.54 -24.18 4.37 -905.36 -3.96 -28.13 16 4 C 0.21 11.25 4.54 85.56 0.39 11.64 16 5 C -0.52 -30.34 8.28 25.60 0.21 -30.12 16 6 H 0.06 3.47 7.25 -2.91 -0.02 3.45 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 9 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 10 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.11 4.02 5.15 85.56 0.44 4.46 16 14 C 0.14 5.61 5.96 42.54 0.25 5.87 16 15 C -0.17 -6.78 8.36 22.43 0.19 -6.59 16 16 C 0.09 3.02 6.52 22.70 0.15 3.17 16 17 C -0.01 -0.36 6.51 22.57 0.15 -0.21 16 18 C 0.11 3.37 11.14 84.70 0.94 4.31 16 19 N -0.47 -17.17 10.26 -183.60 -1.88 -19.05 16 20 O -0.31 -7.76 10.45 -80.90 -0.85 -8.60 16 21 C 0.01 0.23 7.25 72.14 0.52 0.76 16 22 C 0.01 0.19 7.26 72.14 0.52 0.71 16 23 O -0.32 -10.18 10.44 -77.51 -0.81 -10.99 16 24 H 0.06 1.71 6.51 -2.38 -0.02 1.70 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.03 1.01 8.05 -2.39 -0.02 0.99 16 28 H 0.06 2.74 6.59 -2.39 -0.02 2.72 16 29 H -0.04 -2.11 8.12 -2.39 -0.02 -2.13 16 30 H 0.01 0.55 6.28 -2.39 -0.01 0.53 16 31 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.04 1.67 7.89 -2.39 -0.02 1.65 16 33 H 0.11 3.51 6.23 -2.39 -0.01 3.49 16 34 H 0.13 5.33 7.96 -2.91 -0.02 5.30 16 35 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -72.80 321.71 1.29 -71.51 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.05 Total: 10.67 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 5.42 Total: -6.07 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -5.56 Total: -104.02 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.65 Total: -19.59 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.80 1.29 -71.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602438092.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.470 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.25 seconds