Wall clock time and date at job start Tue Mar 31 2020 01:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34888 * 117.00186 * 2 1 4 4 O 1.21626 * 120.00070 * 359.97438 * 3 2 1 5 5 C 1.46491 * 120.00063 * 179.97438 * 3 2 1 6 6 C 1.37999 * 126.26351 * 180.02562 * 5 3 2 7 7 C 1.39799 * 106.96777 * 179.74564 * 6 5 3 8 8 C 1.35485 * 107.84176 * 0.38648 * 7 6 5 9 9 C 1.50698 * 125.50471 * 179.87471 * 8 7 6 10 10 N 1.46503 * 109.46983 * 94.69291 * 9 8 7 11 11 C 1.36934 * 120.00100 * 89.99748 * 10 9 8 12 12 H 1.08000 * 120.00042 * 216.65991 * 11 10 9 13 13 C 1.38816 * 119.99894 * 36.66528 * 11 10 9 14 14 N 1.31620 * 120.00145 * 19.90097 * 13 11 10 15 15 Si 1.86798 * 119.99713 * 199.90298 * 13 11 10 16 16 H 1.48505 * 109.47125 * 269.99670 * 15 13 11 17 17 H 1.48496 * 109.47295 * 29.99985 * 15 13 11 18 18 H 1.48504 * 109.47021 * 150.00161 * 15 13 11 19 19 C 1.46505 * 119.99927 * 269.99608 * 10 9 8 20 20 C 1.52994 * 117.49722 * 193.18659 * 19 10 9 21 21 C 1.53003 * 117.49664 * 124.52712 * 19 10 9 22 22 N 1.34954 * 108.98501 * 359.61157 * 8 7 6 23 23 C 1.46506 * 125.63218 * 180.21148 * 22 8 7 24 24 H 1.09003 * 109.47081 * 300.00543 * 1 2 3 25 25 H 1.09005 * 109.47028 * 59.99926 * 1 2 3 26 26 H 1.08991 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.08000 * 126.51381 * 359.96676 * 6 5 3 28 28 H 1.08005 * 126.07513 * 180.26695 * 7 6 5 29 29 H 1.09005 * 109.47521 * 334.69224 * 9 8 7 30 30 H 1.09005 * 109.47302 * 214.69076 * 9 8 7 31 31 H 0.96998 * 119.99968 * 175.18250 * 14 13 11 32 32 H 1.08997 * 115.54918 * 338.86421 * 19 10 9 33 33 H 1.08995 * 117.50178 * 0.02562 * 20 19 10 34 34 H 1.09007 * 117.49403 * 145.02296 * 20 19 10 35 35 H 1.08999 * 117.50007 * 214.98135 * 21 19 10 36 36 H 1.09003 * 117.49773 * 0.02562 * 21 19 10 37 37 H 1.08996 * 109.47054 * 90.00018 * 23 22 8 38 38 H 1.09004 * 109.46572 * 209.99645 * 23 22 8 39 39 H 1.08994 * 109.47133 * 329.99226 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4021 2.2219 -0.0005 5 6 3.5273 1.2785 0.0006 6 6 4.2843 2.4323 0.0011 7 6 5.6261 2.0401 0.0075 8 6 5.6626 0.6857 0.0019 9 6 6.9126 -0.1561 0.0031 10 7 7.2493 -0.5284 1.3794 11 6 6.7467 -1.6823 1.9190 12 1 6.4607 -1.7117 2.9601 13 6 6.6050 -2.8141 1.1280 14 7 7.2879 -2.9242 0.0082 15 14 5.4451 -4.1811 1.6528 16 1 6.1822 -5.1618 2.4896 17 1 4.3238 -3.6048 2.4374 18 1 4.9072 -4.8635 0.4485 19 6 8.1236 0.3338 2.1785 20 6 8.6877 -0.2428 3.4785 21 6 7.5915 0.8245 3.5265 22 7 4.3988 0.2124 0.0010 23 6 4.0171 -1.2021 -0.0001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9110 3.4458 0.0007 28 1 6.4814 2.6995 0.0136 29 1 7.7346 0.4133 -0.4307 30 1 6.7442 -1.0575 -0.5863 31 1 7.2427 -3.7436 -0.5089 32 1 8.7599 1.0130 1.6112 33 1 8.4087 -1.2637 3.7391 34 1 9.6953 0.0574 3.7667 35 1 7.8781 1.8263 3.8462 36 1 6.5911 0.5055 3.8189 37 1 3.9220 -1.5535 1.0272 38 1 3.0634 -1.3206 -0.5145 39 1 4.7819 -1.7843 -0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602450166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:40 Heat of formation + Delta-G solvation = 16.322697 kcal Electronic energy + Delta-G solvation = -22532.895385 eV Core-core repulsion = 19250.558938 eV Total energy + Delta-G solvation = -3282.336447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96394 -39.54517 -37.02508 -36.17472 -33.73713 -32.27330 -31.22115 -29.31065 -27.61152 -25.91283 -25.57957 -23.80362 -21.99080 -21.38923 -20.00926 -19.69270 -18.99471 -17.42195 -16.76746 -16.35031 -16.20287 -15.64115 -14.84395 -14.48365 -14.23270 -14.03019 -13.63226 -13.10399 -12.91570 -12.84636 -12.47417 -12.11555 -12.03714 -11.92644 -11.61271 -11.47965 -11.09290 -10.88252 -10.83409 -10.67700 -10.64381 -10.40184 -10.31774 -10.13918 -9.74598 -9.36414 -8.64266 -8.14386 -7.54087 -6.68207 -6.04132 -3.58453 1.69612 2.91268 3.13190 3.23427 3.25682 3.30055 3.51350 3.63665 4.24417 4.88139 5.08568 5.13066 5.14418 5.20648 5.22955 5.47480 5.55190 5.77403 5.87000 5.90411 5.94961 6.04186 6.09926 6.20603 6.28828 6.39923 6.46056 6.47367 6.57805 6.68268 6.78326 6.94594 7.12323 7.18238 7.45711 7.63590 7.67273 7.86203 8.08445 8.30456 8.94184 9.55899 10.13542 10.96957 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.007443 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.410901 B = 3761.102678 C = 4871.972211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.542 3.458 4 O -0.519 6.519 5 C -0.086 4.086 6 C -0.094 4.094 7 C -0.231 4.231 8 C 0.095 3.905 9 C 0.190 3.810 10 N -0.541 5.541 11 C -0.254 4.254 12 H 0.063 0.937 13 C 0.016 3.984 14 N -0.887 5.887 15 Si 0.882 3.118 16 H -0.282 1.282 17 H -0.274 1.274 18 H -0.283 1.283 19 C 0.129 3.871 20 C -0.195 4.195 21 C -0.223 4.223 22 N -0.395 5.395 23 C 0.071 3.929 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.260 0.740 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.724 4.030 -1.217 7.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.279 6.279 3 C 0.390 3.610 4 O -0.409 6.409 5 C -0.194 4.194 6 C -0.121 4.121 7 C -0.255 4.255 8 C -0.029 4.029 9 C 0.063 3.937 10 N -0.256 5.256 11 C -0.384 4.384 12 H 0.080 0.920 13 C -0.184 4.184 14 N -0.529 5.529 15 Si 0.711 3.289 16 H -0.209 1.209 17 H -0.199 1.199 18 H -0.208 1.208 19 C 0.020 3.980 20 C -0.233 4.233 21 C -0.263 4.263 22 N -0.068 5.068 23 C -0.070 4.070 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.157 0.843 28 H 0.155 0.845 29 H 0.077 0.923 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.163 3.769 -1.412 7.361 hybrid contribution -0.892 -0.735 0.555 1.282 sum -7.055 3.034 -0.857 7.728 Atomic orbital electron populations 1.23197 0.76785 1.03332 1.02328 1.86676 1.23083 1.33126 1.84981 1.19942 0.87279 0.81270 0.72544 1.90830 1.65807 1.35832 1.48461 1.19153 0.85985 0.88597 1.25703 1.21134 0.92650 0.95926 1.02407 1.20583 0.96126 0.93728 1.15046 1.22393 0.87044 0.94698 0.98795 1.19841 0.87772 0.97872 0.88212 1.43297 1.50928 1.20973 1.10402 1.18959 1.35894 0.87604 0.95957 0.91972 1.25141 0.98814 0.96783 0.97638 1.69835 1.40214 1.26452 1.16424 0.86646 0.81569 0.82460 0.78267 1.20872 1.19920 1.20835 1.21116 0.94881 0.96105 0.85888 1.23092 0.96315 0.99071 1.04864 1.23331 0.98483 0.97118 1.07410 1.43798 1.05382 1.06006 1.51615 1.22289 1.01902 0.78505 1.04300 0.92057 0.92080 0.88361 0.84278 0.84521 0.92319 0.86965 0.92955 0.89137 0.88412 0.90715 0.90815 0.89913 0.90319 0.90163 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.57 101.05 1.07 1.51 16 2 O -0.36 -5.86 8.00 -41.01 -0.33 -6.19 16 3 C 0.54 10.01 7.92 34.06 0.27 10.28 16 4 O -0.52 -10.17 16.68 -19.36 -0.32 -10.49 16 5 C -0.09 -1.66 6.89 -82.00 -0.56 -2.23 16 6 C -0.09 -1.72 10.66 -39.09 -0.42 -2.14 16 7 C -0.23 -4.25 10.71 -39.98 -0.43 -4.68 16 8 C 0.10 1.91 6.43 -82.20 -0.53 1.38 16 9 C 0.19 4.04 5.44 -5.19 -0.03 4.01 16 10 N -0.54 -12.20 2.77 -167.02 -0.46 -12.66 16 11 C -0.25 -6.21 7.97 -15.06 -0.12 -6.33 16 12 H 0.06 1.59 7.19 -52.49 -0.38 1.21 16 13 C 0.02 0.39 3.54 -17.43 -0.06 0.33 16 14 N -0.89 -22.39 11.30 55.49 0.63 -21.76 16 15 Si 0.88 19.37 28.28 -169.99 -4.81 14.56 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.13 2.61 6.61 -67.93 -0.45 2.16 16 20 C -0.19 -3.72 9.80 -26.70 -0.26 -3.98 16 21 C -0.22 -4.20 10.11 -26.69 -0.27 -4.47 16 22 N -0.39 -7.86 3.15 -115.77 -0.36 -8.23 16 23 C 0.07 1.35 9.20 59.85 0.55 1.90 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.14 2.21 8.06 -52.48 -0.42 1.79 16 29 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 30 H 0.11 2.63 4.38 -51.93 -0.23 2.40 16 31 H 0.26 6.39 8.32 -40.82 -0.34 6.05 16 32 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 33 H 0.10 2.07 6.89 -51.93 -0.36 1.71 16 34 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.72 8.07 -51.93 -0.42 1.30 16 37 H 0.08 1.59 7.26 -51.93 -0.38 1.21 16 38 H 0.08 1.36 6.15 -51.93 -0.32 1.04 16 39 H 0.10 1.95 6.11 -51.93 -0.32 1.63 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -27.25 324.68 -7.33 -34.58 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.33 Total: 7.55 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.24 Total: -2.25 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.20 Total: -42.65 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.65 Total: -16.68 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.81 Total: 14.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.25 -7.33 -34.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.904 kcal (2) G-P(sol) polarization free energy of solvation -27.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds