Wall clock time and date at job start Tue Mar 31 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34888 * 117.00186 * 2 1 4 4 O 1.21626 * 120.00070 * 359.97438 * 3 2 1 5 5 C 1.46491 * 120.00063 * 179.97438 * 3 2 1 6 6 C 1.37999 * 126.26351 * 180.02562 * 5 3 2 7 7 C 1.39799 * 106.96777 * 179.74564 * 6 5 3 8 8 C 1.35485 * 107.84176 * 0.38648 * 7 6 5 9 9 C 1.50698 * 125.50471 * 179.87471 * 8 7 6 10 10 N 1.46503 * 109.46983 * 94.69291 * 9 8 7 11 11 C 1.36934 * 120.00100 * 89.99748 * 10 9 8 12 12 H 1.08000 * 120.00042 * 216.65991 * 11 10 9 13 13 C 1.38816 * 119.99894 * 36.66528 * 11 10 9 14 14 N 1.31620 * 120.00145 * 19.90097 * 13 11 10 15 15 Si 1.86798 * 119.99713 * 199.90298 * 13 11 10 16 16 H 1.48505 * 109.47125 * 269.99670 * 15 13 11 17 17 H 1.48496 * 109.47295 * 29.99985 * 15 13 11 18 18 H 1.48504 * 109.47021 * 150.00161 * 15 13 11 19 19 C 1.46505 * 119.99927 * 269.99608 * 10 9 8 20 20 C 1.52994 * 117.49722 * 193.18659 * 19 10 9 21 21 C 1.53003 * 117.49664 * 124.52712 * 19 10 9 22 22 N 1.34954 * 108.98501 * 359.61157 * 8 7 6 23 23 C 1.46506 * 125.63218 * 180.21148 * 22 8 7 24 24 H 1.09003 * 109.47081 * 300.00543 * 1 2 3 25 25 H 1.09005 * 109.47028 * 59.99926 * 1 2 3 26 26 H 1.08991 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.08000 * 126.51381 * 359.96676 * 6 5 3 28 28 H 1.08005 * 126.07513 * 180.26695 * 7 6 5 29 29 H 1.09005 * 109.47521 * 334.69224 * 9 8 7 30 30 H 1.09005 * 109.47302 * 214.69076 * 9 8 7 31 31 H 0.96998 * 119.99968 * 175.18250 * 14 13 11 32 32 H 1.08997 * 115.54918 * 338.86421 * 19 10 9 33 33 H 1.08995 * 117.50178 * 0.02562 * 20 19 10 34 34 H 1.09007 * 117.49403 * 145.02296 * 20 19 10 35 35 H 1.08999 * 117.50007 * 214.98135 * 21 19 10 36 36 H 1.09003 * 117.49773 * 0.02562 * 21 19 10 37 37 H 1.08996 * 109.47054 * 90.00018 * 23 22 8 38 38 H 1.09004 * 109.46572 * 209.99645 * 23 22 8 39 39 H 1.08994 * 109.47133 * 329.99226 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4021 2.2219 -0.0005 5 6 3.5273 1.2785 0.0006 6 6 4.2843 2.4323 0.0011 7 6 5.6261 2.0401 0.0075 8 6 5.6626 0.6857 0.0019 9 6 6.9126 -0.1561 0.0031 10 7 7.2493 -0.5284 1.3794 11 6 6.7467 -1.6823 1.9190 12 1 6.4607 -1.7117 2.9601 13 6 6.6050 -2.8141 1.1280 14 7 7.2879 -2.9242 0.0082 15 14 5.4451 -4.1811 1.6528 16 1 6.1822 -5.1618 2.4896 17 1 4.3238 -3.6048 2.4374 18 1 4.9072 -4.8635 0.4485 19 6 8.1236 0.3338 2.1785 20 6 8.6877 -0.2428 3.4785 21 6 7.5915 0.8245 3.5265 22 7 4.3988 0.2124 0.0010 23 6 4.0171 -1.2021 -0.0001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9110 3.4458 0.0007 28 1 6.4814 2.6995 0.0136 29 1 7.7346 0.4133 -0.4307 30 1 6.7442 -1.0575 -0.5863 31 1 7.2427 -3.7436 -0.5089 32 1 8.7599 1.0130 1.6112 33 1 8.4087 -1.2637 3.7391 34 1 9.6953 0.0574 3.7667 35 1 7.8781 1.8263 3.8462 36 1 6.5911 0.5055 3.8189 37 1 3.9220 -1.5535 1.0272 38 1 3.0634 -1.3206 -0.5145 39 1 4.7819 -1.7843 -0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602450166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:38 Heat of formation + Delta-G solvation = 3.334141 kcal Electronic energy + Delta-G solvation = -22533.458611 eV Core-core repulsion = 19250.558938 eV Total energy + Delta-G solvation = -3282.899673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.42369 -40.91570 -38.64135 -37.52145 -35.42821 -33.76840 -32.95179 -30.82918 -28.83860 -27.41582 -27.16906 -25.45433 -23.39633 -22.91256 -21.66008 -21.15681 -20.47454 -18.85911 -18.36748 -17.81671 -17.52152 -17.32062 -16.43490 -16.04930 -15.72062 -15.66909 -15.05472 -14.62043 -14.30106 -14.29884 -13.86628 -13.61742 -13.52816 -13.25298 -13.14186 -12.98851 -12.82558 -12.58583 -12.51549 -12.16944 -12.05995 -11.87160 -11.85562 -11.79741 -11.41616 -10.90964 -10.45480 -9.62052 -9.04609 -8.45882 -7.88182 -5.45617 0.24323 1.36529 1.44974 1.49950 1.66116 1.76141 2.04513 2.19493 2.44341 3.13691 3.47141 3.60674 3.74911 4.04738 4.23254 4.26117 4.29561 4.35420 4.40264 4.44514 4.54270 4.59756 4.63109 4.66319 4.74893 4.84210 4.98741 5.09517 5.13121 5.23720 5.33972 5.38101 5.51418 5.57277 5.70795 5.97962 6.18296 6.34351 6.46527 6.69945 7.12072 7.79554 8.32185 9.09318 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.007443 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.410901 B = 3761.102678 C = 4871.972211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.543 3.457 4 O -0.534 6.534 5 C -0.100 4.100 6 C -0.095 4.095 7 C -0.222 4.222 8 C 0.075 3.925 9 C 0.195 3.805 10 N -0.554 5.554 11 C -0.255 4.255 12 H 0.044 0.956 13 C -0.009 4.009 14 N -0.907 5.907 15 Si 0.921 3.079 16 H -0.290 1.290 17 H -0.273 1.273 18 H -0.277 1.277 19 C 0.110 3.890 20 C -0.191 4.191 21 C -0.208 4.208 22 N -0.403 5.403 23 C 0.081 3.919 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.258 0.742 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.135 5.064 -1.145 8.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C 0.392 3.608 4 O -0.426 6.426 5 C -0.209 4.209 6 C -0.122 4.122 7 C -0.246 4.246 8 C -0.048 4.048 9 C 0.068 3.932 10 N -0.270 5.270 11 C -0.385 4.385 12 H 0.061 0.939 13 C -0.207 4.207 14 N -0.550 5.550 15 Si 0.749 3.251 16 H -0.217 1.217 17 H -0.198 1.198 18 H -0.202 1.202 19 C 0.001 3.999 20 C -0.230 4.230 21 C -0.248 4.248 22 N -0.077 5.077 23 C -0.061 4.061 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.149 0.851 27 H 0.176 0.824 28 H 0.178 0.822 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.580 4.804 -1.335 8.256 hybrid contribution -0.816 -1.028 0.557 1.426 sum -7.396 3.777 -0.777 8.341 Atomic orbital electron populations 1.23581 0.74210 1.05730 1.02833 1.86642 1.25599 1.31901 1.84397 1.19846 0.87042 0.81697 0.72211 1.90814 1.66057 1.36416 1.49311 1.19520 0.86767 0.88818 1.25791 1.21436 0.92533 0.96587 1.01663 1.20856 0.97005 0.93167 1.13552 1.22304 0.86766 0.95345 1.00422 1.19683 0.88813 0.97255 0.87409 1.43420 1.51687 1.20945 1.10956 1.18867 1.35826 0.88593 0.95238 0.93867 1.25452 0.99594 0.97949 0.97691 1.69918 1.41307 1.26685 1.17110 0.86043 0.80388 0.80662 0.77976 1.21679 1.19802 1.20187 1.21416 0.95458 0.96603 0.86375 1.23071 0.97846 0.97869 1.04197 1.23248 0.97122 0.98319 1.06137 1.43869 1.05569 1.06236 1.51993 1.22151 1.02333 0.78340 1.03236 0.91822 0.91353 0.85088 0.82372 0.82217 0.91129 0.89237 0.93232 0.86935 0.91103 0.87867 0.87897 0.92429 0.91913 0.88236 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.57 113.37 1.20 1.82 16 2 O -0.37 -11.38 8.00 -58.02 -0.46 -11.85 16 3 C 0.54 19.42 7.92 69.97 0.55 19.97 16 4 O -0.53 -20.19 16.68 19.42 0.32 -19.87 16 5 C -0.10 -3.78 6.89 40.32 0.28 -3.50 16 6 C -0.10 -3.32 10.66 22.59 0.24 -3.08 16 7 C -0.22 -7.74 10.71 22.01 0.24 -7.51 16 8 C 0.08 2.96 6.43 41.44 0.27 3.22 16 9 C 0.20 8.25 5.44 85.63 0.47 8.72 16 10 N -0.55 -24.91 2.77 -682.32 -1.89 -26.80 16 11 C -0.25 -12.62 7.97 84.03 0.67 -11.95 16 12 H 0.04 2.28 7.19 -2.91 -0.02 2.26 16 13 C -0.01 -0.42 3.54 84.86 0.30 -0.12 16 14 N -0.91 -46.34 11.30 21.65 0.24 -46.09 16 15 Si 0.92 40.10 28.28 68.60 1.94 42.04 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 19 C 0.11 4.27 6.61 44.99 0.30 4.57 16 20 C -0.19 -7.07 9.80 30.62 0.30 -6.77 16 21 C -0.21 -7.50 10.11 30.62 0.31 -7.19 16 22 N -0.40 -15.87 3.15 -520.20 -1.64 -17.50 16 23 C 0.08 3.07 9.20 127.77 1.18 4.25 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.16 4.81 8.06 -2.91 -0.02 4.78 16 28 H 0.16 4.70 8.06 -2.91 -0.02 4.68 16 29 H 0.07 2.74 8.04 -2.38 -0.02 2.72 16 30 H 0.09 4.25 4.38 -2.38 -0.01 4.24 16 31 H 0.26 12.83 8.32 -92.71 -0.77 12.06 16 32 H 0.11 3.85 8.10 -2.39 -0.02 3.84 16 33 H 0.07 3.01 6.89 -2.39 -0.02 2.99 16 34 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 35 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.06 2.37 8.07 -2.39 -0.02 2.35 16 37 H 0.06 2.56 7.26 -2.39 -0.02 2.54 16 38 H 0.10 3.30 6.15 -2.38 -0.01 3.29 16 39 H 0.08 3.37 6.11 -2.39 -0.01 3.35 16 Total: -1.00 -57.73 324.68 5.86 -51.87 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 1.05 Total: 25.77 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 6.29 Total: 2.43 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -3.29 Total: -90.40 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.14 Total: -31.71 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.94 Total: 42.04 kcal Total: -57.73 5.86 -51.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.204 kcal (2) G-P(sol) polarization free energy of solvation -57.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds