Wall clock time and date at job start Tue Mar 31 2020 01:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45203 * 109.47270 * 2 1 4 4 C 1.34891 * 116.99753 * 179.97438 * 3 2 1 5 5 O 1.21615 * 120.00508 * 359.97438 * 4 3 2 6 6 C 1.46493 * 119.99686 * 179.97438 * 4 3 2 7 7 C 1.37994 * 126.26495 * 180.02562 * 6 4 3 8 8 C 1.39797 * 106.96775 * 179.97438 * 7 6 4 9 9 C 1.35486 * 107.84472 * 359.97438 * 8 7 6 10 10 C 1.50695 * 125.50454 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.47086 * 95.02601 * 10 9 8 12 12 C 1.36943 * 120.00091 * 90.00039 * 11 10 9 13 13 H 1.07996 * 119.99941 * 215.31806 * 12 11 10 14 14 C 1.38812 * 119.99691 * 35.31093 * 12 11 10 15 15 N 1.31621 * 119.99537 * 202.13509 * 14 12 11 16 16 Si 1.86793 * 120.00192 * 22.13672 * 14 12 11 17 17 H 1.48495 * 109.47387 * 264.71486 * 16 14 12 18 18 H 1.48497 * 109.47123 * 24.72053 * 16 14 12 19 19 H 1.48505 * 109.47099 * 144.71273 * 16 14 12 20 20 C 1.46502 * 120.00073 * 269.99564 * 11 10 9 21 21 C 1.52999 * 117.49796 * 192.46254 * 20 11 10 22 22 C 1.53001 * 117.49599 * 123.80004 * 20 11 10 23 23 N 1.34951 * 108.98419 * 0.26339 * 9 8 7 24 24 H 0.96999 * 125.63394 * 179.73099 * 23 9 8 25 25 H 1.08997 * 109.46899 * 60.00205 * 1 2 3 26 26 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47236 * 300.00029 * 1 2 3 28 28 H 1.08998 * 109.47236 * 239.99971 * 2 1 3 29 29 H 1.09006 * 109.46721 * 119.99711 * 2 1 3 30 30 H 1.07997 * 126.51503 * 359.97438 * 7 6 4 31 31 H 1.08006 * 126.07424 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47590 * 335.02872 * 10 9 8 33 33 H 1.09000 * 109.47346 * 215.02183 * 10 9 8 34 34 H 0.96999 * 119.99509 * 180.02562 * 15 14 12 35 35 H 1.08992 * 115.54982 * 338.13373 * 20 11 10 36 36 H 1.08997 * 117.49949 * 359.97438 * 21 20 11 37 37 H 1.09002 * 117.50083 * 145.02607 * 21 20 11 38 38 H 1.09000 * 117.49886 * 214.97869 * 22 20 11 39 39 H 1.08994 * 117.50044 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3514 1.5456 0.0005 5 8 4.0922 0.5812 0.0015 6 6 3.9113 2.8993 0.0000 7 6 5.2515 3.2283 0.0000 8 6 5.3289 4.6241 -0.0012 9 6 4.0642 5.1101 -0.0024 10 6 3.6873 6.5692 -0.0045 11 7 3.4486 7.0099 -1.3811 12 6 2.1932 6.9206 -1.9208 13 1 2.0708 6.6814 -2.9668 14 6 1.0779 7.1372 -1.1232 15 7 -0.0907 6.6470 -1.4788 16 14 1.2355 8.1245 0.4547 17 1 1.4280 7.1994 1.6003 18 1 2.4030 9.0366 0.3533 19 1 0.0008 8.9224 0.6648 20 6 4.5530 7.5464 -2.1804 21 6 4.1986 8.2548 -3.4893 22 6 4.8492 6.8695 -3.5202 23 7 3.1967 4.0764 0.0038 24 1 2.2295 4.1503 0.0081 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 6.0825 2.5386 0.0007 31 1 6.2357 5.2108 -0.0020 32 1 4.4981 7.1546 0.4289 33 1 2.7813 6.7112 0.5846 34 1 -0.8701 6.7987 -0.9217 35 1 5.4001 7.9315 -1.6130 36 1 3.1438 8.3214 -3.7560 37 1 4.8129 9.1059 -3.7834 38 1 5.8912 6.8098 -3.8344 39 1 4.2221 6.0254 -3.8071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602450211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:49 Heat of formation + Delta-G solvation = 8.132416 kcal Electronic energy + Delta-G solvation = -21862.761114 eV Core-core repulsion = 18580.069510 eV Total energy + Delta-G solvation = -3282.691605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.39 seconds Orbital eigenvalues (eV) -40.97551 -39.62774 -37.26122 -36.32740 -33.78890 -31.88244 -31.58905 -30.55603 -29.23865 -26.08096 -24.15096 -23.38082 -21.92535 -21.48326 -20.13106 -19.89319 -19.57319 -18.37257 -16.96850 -16.42985 -16.34926 -15.69135 -15.32362 -14.49530 -14.26781 -13.86631 -13.44946 -13.38090 -13.12451 -12.86957 -12.76290 -12.40199 -12.32569 -12.16620 -11.87013 -11.85026 -11.58650 -11.01705 -10.94862 -10.71938 -10.46444 -10.43021 -10.20109 -10.06647 -9.69453 -9.45188 -8.68359 -8.55773 -7.72337 -6.96783 -6.20049 -3.61175 1.61320 2.81834 3.06146 3.14035 3.33517 3.36137 3.53194 3.69314 4.30199 4.75964 4.77530 4.92697 4.94822 5.09389 5.12502 5.24567 5.52535 5.60657 5.69396 5.73509 5.74038 5.76697 5.91336 5.95701 5.98480 6.00715 6.19822 6.39392 6.41033 6.45436 6.48355 6.64119 6.85721 7.06228 7.21986 7.42008 7.80397 7.92385 8.03956 8.19669 8.75677 9.47859 9.85564 10.94037 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.006154 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.007815 B = 4548.519978 C = 5426.810668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.360 6.360 4 C 0.542 3.458 5 O -0.517 6.517 6 C -0.071 4.071 7 C -0.093 4.093 8 C -0.223 4.223 9 C 0.089 3.911 10 C 0.186 3.814 11 N -0.563 5.563 12 C -0.269 4.269 13 H 0.084 0.916 14 C 0.035 3.965 15 N -0.891 5.891 16 Si 0.871 3.129 17 H -0.285 1.285 18 H -0.264 1.264 19 H -0.298 1.298 20 C 0.124 3.876 21 C -0.192 4.192 22 C -0.215 4.215 23 N -0.503 5.503 24 H 0.426 0.574 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.266 0.734 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 -5.830 3.871 8.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 O -0.277 6.277 4 C 0.389 3.611 5 O -0.407 6.407 6 C -0.182 4.182 7 C -0.120 4.120 8 C -0.247 4.247 9 C -0.036 4.036 10 C 0.059 3.941 11 N -0.281 5.281 12 C -0.398 4.398 13 H 0.102 0.898 14 C -0.166 4.166 15 N -0.531 5.531 16 Si 0.700 3.300 17 H -0.213 1.213 18 H -0.189 1.189 19 H -0.225 1.225 20 C 0.015 3.985 21 C -0.230 4.230 22 C -0.255 4.255 23 N -0.097 5.097 24 H 0.265 0.735 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.243 -6.184 3.913 9.002 hybrid contribution -0.549 0.278 0.665 0.906 sum 4.694 -5.906 4.577 8.824 Atomic orbital electron populations 1.21814 0.92636 1.02712 1.03921 1.22972 0.95327 0.80118 1.02354 1.86637 1.24117 1.32336 1.84635 1.19871 0.80230 0.88334 0.72616 1.90835 1.60431 1.41217 1.48212 1.19158 0.91761 0.83186 1.24071 1.21166 0.93007 0.95637 1.02217 1.20553 0.96174 0.93598 1.14396 1.21946 0.89502 0.92039 1.00139 1.20057 1.00060 0.85937 0.88008 1.43690 1.05726 1.68470 1.10210 1.18727 0.80175 1.43549 0.97314 0.89807 1.25420 0.95039 0.97927 0.98237 1.69864 1.00254 1.43467 1.39503 0.87056 0.77494 0.81839 0.83562 1.21307 1.18865 1.22546 1.21059 0.92238 0.99104 0.86051 1.23160 1.01997 0.94365 1.03508 1.23321 0.99572 0.96384 1.06260 1.41930 1.09892 1.04450 1.53432 0.73489 0.91149 0.90373 0.91474 0.91286 0.91410 0.83981 0.84272 0.90636 0.91800 0.92398 0.88735 0.87915 0.90387 0.90546 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 37.16 0.38 -1.24 16 2 C 0.07 0.86 6.20 37.16 0.23 1.09 16 3 O -0.36 -6.05 10.23 -41.01 -0.42 -6.47 16 4 C 0.54 9.89 7.93 34.06 0.27 10.16 16 5 O -0.52 -9.95 16.68 -19.35 -0.32 -10.27 16 6 C -0.07 -1.32 7.10 -81.99 -0.58 -1.90 16 7 C -0.09 -1.61 10.66 -39.09 -0.42 -2.02 16 8 C -0.22 -3.78 10.71 -39.98 -0.43 -4.21 16 9 C 0.09 1.68 6.69 -82.21 -0.55 1.13 16 10 C 0.19 3.66 5.07 -5.20 -0.03 3.63 16 11 N -0.56 -12.20 2.46 -167.03 -0.41 -12.61 16 12 C -0.27 -6.84 8.64 -15.06 -0.13 -6.97 16 13 H 0.08 2.37 7.32 -52.49 -0.38 1.99 16 14 C 0.04 0.92 5.32 -17.43 -0.09 0.83 16 15 N -0.89 -24.98 13.97 55.49 0.78 -24.21 16 16 Si 0.87 20.19 24.93 -169.99 -4.24 15.96 16 17 H -0.28 -6.35 6.67 56.52 0.38 -5.97 16 18 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.30 -7.16 7.11 56.52 0.40 -6.75 16 20 C 0.12 2.33 6.61 -67.93 -0.45 1.88 16 21 C -0.19 -3.49 9.79 -26.69 -0.26 -3.75 16 22 C -0.21 -3.88 10.13 -26.69 -0.27 -4.15 16 23 N -0.50 -9.69 6.07 -5.82 -0.04 -9.72 16 24 H 0.43 8.45 8.96 -40.82 -0.37 8.08 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.14 2.01 8.06 -52.48 -0.42 1.58 16 32 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 33 H 0.06 1.36 2.94 -51.93 -0.15 1.21 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 36 H 0.10 2.13 6.83 -51.93 -0.35 1.77 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 LS Contribution 332.12 15.07 5.01 5.01 Total: -1.00 -28.95 332.12 -7.45 -36.41 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.48 Total: 11.44 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.32 Total: -5.52 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.33 Total: -46.54 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.74 Total: -16.75 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.24 Total: 15.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.95 -7.45 -36.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.539 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.39 seconds