Wall clock time and date at job start Tue Mar 31 2020 01:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45203 * 109.47270 * 2 1 4 4 C 1.34891 * 116.99753 * 179.97438 * 3 2 1 5 5 O 1.21615 * 120.00508 * 359.97438 * 4 3 2 6 6 C 1.46493 * 119.99686 * 179.97438 * 4 3 2 7 7 C 1.37994 * 126.26495 * 180.02562 * 6 4 3 8 8 C 1.39797 * 106.96775 * 179.97438 * 7 6 4 9 9 C 1.35486 * 107.84472 * 359.97438 * 8 7 6 10 10 C 1.50695 * 125.50454 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.47086 * 95.02601 * 10 9 8 12 12 C 1.36943 * 120.00091 * 90.00039 * 11 10 9 13 13 H 1.07996 * 119.99941 * 215.31806 * 12 11 10 14 14 C 1.38812 * 119.99691 * 35.31093 * 12 11 10 15 15 N 1.31621 * 119.99537 * 202.13509 * 14 12 11 16 16 Si 1.86793 * 120.00192 * 22.13672 * 14 12 11 17 17 H 1.48495 * 109.47387 * 264.71486 * 16 14 12 18 18 H 1.48497 * 109.47123 * 24.72053 * 16 14 12 19 19 H 1.48505 * 109.47099 * 144.71273 * 16 14 12 20 20 C 1.46502 * 120.00073 * 269.99564 * 11 10 9 21 21 C 1.52999 * 117.49796 * 192.46254 * 20 11 10 22 22 C 1.53001 * 117.49599 * 123.80004 * 20 11 10 23 23 N 1.34951 * 108.98419 * 0.26339 * 9 8 7 24 24 H 0.96999 * 125.63394 * 179.73099 * 23 9 8 25 25 H 1.08997 * 109.46899 * 60.00205 * 1 2 3 26 26 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47236 * 300.00029 * 1 2 3 28 28 H 1.08998 * 109.47236 * 239.99971 * 2 1 3 29 29 H 1.09006 * 109.46721 * 119.99711 * 2 1 3 30 30 H 1.07997 * 126.51503 * 359.97438 * 7 6 4 31 31 H 1.08006 * 126.07424 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47590 * 335.02872 * 10 9 8 33 33 H 1.09000 * 109.47346 * 215.02183 * 10 9 8 34 34 H 0.96999 * 119.99509 * 180.02562 * 15 14 12 35 35 H 1.08992 * 115.54982 * 338.13373 * 20 11 10 36 36 H 1.08997 * 117.49949 * 359.97438 * 21 20 11 37 37 H 1.09002 * 117.50083 * 145.02607 * 21 20 11 38 38 H 1.09000 * 117.49886 * 214.97869 * 22 20 11 39 39 H 1.08994 * 117.50044 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3514 1.5456 0.0005 5 8 4.0922 0.5812 0.0015 6 6 3.9113 2.8993 0.0000 7 6 5.2515 3.2283 0.0000 8 6 5.3289 4.6241 -0.0012 9 6 4.0642 5.1101 -0.0024 10 6 3.6873 6.5692 -0.0045 11 7 3.4486 7.0099 -1.3811 12 6 2.1932 6.9206 -1.9208 13 1 2.0708 6.6814 -2.9668 14 6 1.0779 7.1372 -1.1232 15 7 -0.0907 6.6470 -1.4788 16 14 1.2355 8.1245 0.4547 17 1 1.4280 7.1994 1.6003 18 1 2.4030 9.0366 0.3533 19 1 0.0008 8.9224 0.6648 20 6 4.5530 7.5464 -2.1804 21 6 4.1986 8.2548 -3.4893 22 6 4.8492 6.8695 -3.5202 23 7 3.1967 4.0764 0.0038 24 1 2.2295 4.1503 0.0081 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 6.0825 2.5386 0.0007 31 1 6.2357 5.2108 -0.0020 32 1 4.4981 7.1546 0.4289 33 1 2.7813 6.7112 0.5846 34 1 -0.8701 6.7987 -0.9217 35 1 5.4001 7.9315 -1.6130 36 1 3.1438 8.3214 -3.7560 37 1 4.8129 9.1059 -3.7834 38 1 5.8912 6.8098 -3.8344 39 1 4.2221 6.0254 -3.8071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602450211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:47 Heat of formation + Delta-G solvation = -8.415481 kcal Electronic energy + Delta-G solvation = -21863.478685 eV Core-core repulsion = 18580.069510 eV Total energy + Delta-G solvation = -3283.409175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37386 -40.99087 -38.83091 -37.67625 -35.43272 -33.59850 -32.78324 -31.92814 -30.75724 -27.67422 -25.85723 -24.59502 -23.16613 -22.94040 -21.55190 -21.52128 -20.96677 -19.80191 -18.58771 -17.86907 -17.67627 -17.40589 -16.94432 -15.98828 -15.54328 -15.40361 -14.86356 -14.73511 -14.53282 -14.50989 -14.00353 -13.84943 -13.81066 -13.45901 -13.41142 -13.00457 -12.70600 -12.69457 -12.58913 -12.21532 -11.95677 -11.87404 -11.75563 -11.61539 -11.37255 -10.93431 -10.61082 -9.94176 -9.15404 -8.70922 -8.21498 -5.59721 0.19589 1.27547 1.43589 1.52938 1.57661 1.70100 2.15184 2.26740 2.37613 3.02184 3.23894 3.41164 3.79271 3.94147 4.00974 4.05547 4.16264 4.26870 4.33324 4.41958 4.43338 4.49236 4.58779 4.70105 4.76458 4.84036 4.98800 5.00974 5.05563 5.10425 5.25849 5.34050 5.34885 5.56895 5.84651 5.90398 6.04343 6.17615 6.43708 6.65181 6.92305 7.58092 7.96294 8.96901 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.006154 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.007815 B = 4548.519978 C = 5426.810668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.373 6.373 4 C 0.541 3.459 5 O -0.532 6.532 6 C -0.090 4.090 7 C -0.092 4.092 8 C -0.207 4.207 9 C 0.069 3.931 10 C 0.183 3.817 11 N -0.575 5.575 12 C -0.249 4.249 13 H 0.038 0.962 14 C -0.016 4.016 15 N -0.942 5.942 16 Si 0.934 3.066 17 H -0.271 1.271 18 H -0.247 1.247 19 H -0.314 1.314 20 C 0.114 3.886 21 C -0.192 4.192 22 C -0.207 4.207 23 N -0.515 5.515 24 H 0.418 0.582 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.162 0.838 31 H 0.173 0.827 32 H 0.115 0.885 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.137 0.863 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 -5.335 5.142 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.290 6.290 4 C 0.389 3.611 5 O -0.423 6.423 6 C -0.200 4.200 7 C -0.119 4.119 8 C -0.230 4.230 9 C -0.055 4.055 10 C 0.058 3.942 11 N -0.293 5.293 12 C -0.379 4.379 13 H 0.055 0.945 14 C -0.213 4.213 15 N -0.585 5.585 16 Si 0.762 3.238 17 H -0.199 1.199 18 H -0.171 1.171 19 H -0.243 1.243 20 C 0.007 3.993 21 C -0.231 4.231 22 C -0.248 4.248 23 N -0.108 5.108 24 H 0.255 0.745 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.180 0.820 31 H 0.190 0.810 32 H 0.133 0.867 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.964 -5.688 5.189 11.077 hybrid contribution -1.355 0.015 0.171 1.366 sum 6.609 -5.672 5.360 10.226 Atomic orbital electron populations 1.21848 0.90738 1.04623 1.03273 1.23340 0.96833 0.78498 1.03021 1.86641 1.23444 1.34701 1.84238 1.19918 0.80621 0.88226 0.72295 1.90810 1.60808 1.41572 1.49154 1.19487 0.92555 0.83199 1.24750 1.21516 0.92853 0.96362 1.01141 1.20910 0.96376 0.93521 1.12217 1.22009 0.90265 0.91678 1.01584 1.20167 1.00639 0.86950 0.86484 1.43768 1.05008 1.69325 1.11222 1.18413 0.82304 1.41743 0.95399 0.94458 1.25944 0.94583 0.99049 1.01721 1.69999 1.01204 1.45802 1.41518 0.86031 0.77061 0.80348 0.80323 1.19884 1.17074 1.24279 1.21484 0.92347 0.99207 0.86275 1.23138 1.00546 0.95798 1.03583 1.23247 1.00624 0.94921 1.05968 1.42014 1.09612 1.05092 1.54093 0.74543 0.92279 0.87142 0.91585 0.91021 0.90340 0.82017 0.80954 0.86739 0.93584 0.92761 0.84548 0.91668 0.86871 0.87126 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 10.29 71.98 0.74 -2.26 16 2 C 0.06 1.44 6.20 71.98 0.45 1.88 16 3 O -0.37 -12.71 10.23 -58.05 -0.59 -13.31 16 4 C 0.54 19.72 7.93 69.97 0.55 20.28 16 5 O -0.53 -20.21 16.68 19.46 0.32 -19.89 16 6 C -0.09 -3.27 7.10 40.32 0.29 -2.99 16 7 C -0.09 -2.95 10.66 22.59 0.24 -2.71 16 8 C -0.21 -6.29 10.71 22.01 0.24 -6.05 16 9 C 0.07 2.46 6.69 41.44 0.28 2.74 16 10 C 0.18 6.72 5.07 85.63 0.43 7.16 16 11 N -0.57 -24.12 2.46 -682.35 -1.68 -25.80 16 12 C -0.25 -12.96 8.64 84.03 0.73 -12.24 16 13 H 0.04 2.26 7.32 -2.91 -0.02 2.24 16 14 C -0.02 -0.86 5.32 84.86 0.45 -0.41 16 15 N -0.94 -55.27 13.97 21.65 0.30 -54.96 16 16 Si 0.93 41.94 24.93 68.60 1.71 43.65 16 17 H -0.27 -11.47 6.67 99.48 0.66 -10.81 16 18 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 19 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 20 C 0.11 3.96 6.61 44.99 0.30 4.25 16 21 C -0.19 -6.69 9.79 30.62 0.30 -6.39 16 22 C -0.21 -7.11 10.13 30.62 0.31 -6.80 16 23 N -0.51 -19.76 6.07 -172.33 -1.05 -20.81 16 24 H 0.42 17.09 8.96 -92.71 -0.83 16.26 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 31 H 0.17 4.03 8.06 -2.91 -0.02 4.00 16 32 H 0.11 3.29 8.04 -2.39 -0.02 3.27 16 33 H 0.05 1.87 2.94 -2.39 -0.01 1.86 16 34 H 0.26 14.75 8.31 -92.71 -0.77 13.97 16 35 H 0.14 3.66 8.10 -2.39 -0.02 3.64 16 36 H 0.06 2.77 6.83 -2.39 -0.02 2.76 16 37 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -65.26 332.12 4.51 -60.76 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.19 Total: 33.90 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.30 Total: -3.54 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -2.42 Total: -101.57 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.27 Total: -33.19 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.71 Total: 43.65 kcal Total: -65.26 4.51 -60.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.342 kcal (2) G-P(sol) polarization free energy of solvation -65.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds