Wall clock time and date at job start Tue Mar 31 2020 00:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47061 * 119.99902 * 9 7 5 12 12 H 1.48503 * 109.47075 * 240.00004 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 3 17 17 N 1.31834 * 119.65836 * 90.00054 * 16 15 13 18 18 C 1.31851 * 121.77937 * 179.97438 * 17 16 15 19 19 C 1.38248 * 120.88756 * 0.02562 * 18 17 16 20 20 C 1.38537 * 119.22319 * 359.97438 * 19 18 17 21 21 C 1.38706 * 119.65451 * 269.72015 * 16 15 13 22 22 O 1.35911 * 120.47740 * 0.02562 * 21 16 15 23 23 C 1.42895 * 117.00440 * 179.97438 * 22 21 16 24 24 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 25 25 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 27 27 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 28 28 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 29 29 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 30 30 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 31 31 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 34 34 H 1.07996 * 119.55361 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.39228 * 179.97438 * 19 18 17 36 36 H 1.07993 * 120.81663 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.46693 * 59.99844 * 23 22 21 38 38 H 1.09001 * 109.47616 * 179.97438 * 23 22 21 39 39 H 1.09000 * 109.47035 * 300.00307 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.6009 1.2403 -2.4169 11 1 5.9206 1.4179 -4.7380 12 1 6.6217 3.3970 -3.5247 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 6 2.3292 2.2258 3.6176 17 7 1.3926 3.0066 4.1189 18 6 1.6364 3.8282 5.1209 19 6 2.8951 3.9024 5.6877 20 6 3.9088 3.0991 5.1914 21 6 3.6152 2.2395 4.1373 22 8 4.5761 1.4291 3.6207 23 6 5.8748 1.5040 4.2120 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6876 -2.0285 30 1 2.0956 3.1410 -1.1385 31 1 3.6759 3.5175 -4.4431 32 1 0.9499 1.0100 2.5343 33 1 2.6281 0.4167 2.5258 34 1 0.8420 4.4517 5.5038 35 1 3.0860 4.5786 6.5079 36 1 4.9017 3.1365 5.6145 37 1 5.8086 1.2433 5.2683 38 1 6.5445 0.8074 3.7075 39 1 6.2618 2.5180 4.1115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619581973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:54 Heat of formation + Delta-G solvation = -37.716089 kcal Electronic energy + Delta-G solvation = -21943.959023 eV Core-core repulsion = 18659.279278 eV Total energy + Delta-G solvation = -3284.679745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70115 -38.77011 -38.01254 -35.16220 -33.11451 -32.57424 -31.30821 -29.98350 -28.55403 -27.45394 -26.49921 -23.20420 -22.87819 -22.79918 -21.70445 -18.39094 -17.94505 -17.08127 -16.53178 -16.27361 -16.14635 -15.65361 -15.16061 -14.51278 -14.29102 -14.14503 -13.80832 -13.52908 -13.25926 -13.00907 -12.79812 -12.43527 -12.22708 -11.91203 -11.67657 -11.45060 -11.38014 -11.31305 -11.10594 -10.82893 -10.63255 -10.45161 -10.06579 -9.69527 -9.53689 -9.46748 -8.81555 -8.37872 -8.19981 -7.54389 -5.98063 -4.01970 1.19005 1.35841 3.22118 3.32538 3.39533 3.43579 3.59196 3.75772 4.16028 4.43987 4.52158 4.67186 4.73369 4.97483 5.08384 5.14688 5.26270 5.31810 5.37156 5.43211 5.46240 5.53936 5.61569 5.77064 5.88224 5.96521 6.04639 6.13712 6.20061 6.33616 6.49346 6.60891 7.16152 7.25905 7.54621 7.66543 7.99621 8.11587 8.32006 8.54444 8.98894 9.22927 9.62757 11.10112 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.005507 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.829731 B = 5083.676731 C = 5868.903725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.518 3.482 14 O -0.538 6.538 15 C -0.089 4.089 16 C 0.137 3.863 17 N -0.440 5.440 18 C 0.061 3.939 19 C -0.140 4.140 20 C -0.167 4.167 21 C 0.093 3.907 22 O -0.302 6.302 23 C 0.027 3.973 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.053 0.947 38 H 0.102 0.898 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -5.642 18.089 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.304 3.696 14 O -0.415 6.415 15 C -0.129 4.129 16 C -0.003 4.003 17 N -0.149 5.149 18 C -0.096 4.096 19 C -0.160 4.160 20 C -0.193 4.193 21 C 0.045 3.955 22 O -0.214 6.214 23 C -0.069 4.069 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.476 -5.098 17.381 18.173 hybrid contribution 2.069 0.106 0.163 2.078 sum 0.593 -4.993 17.544 18.250 Atomic orbital electron populations 1.22232 0.96841 1.01335 1.02445 1.21417 0.93496 0.84251 1.02635 1.48197 1.64077 1.13234 1.07536 1.19248 0.96164 0.93653 0.78178 1.21502 0.96990 1.31477 1.06046 0.92408 1.24940 0.97744 0.95049 0.96482 1.69948 1.35542 1.33680 1.14365 0.86467 0.84850 0.77971 0.78270 1.19832 1.20992 1.20990 1.19928 0.78394 0.86794 0.84525 1.90666 1.45581 1.18107 1.87125 1.20580 1.04227 0.97591 0.90536 1.20073 0.86913 0.96867 0.96462 1.67456 1.34091 1.03950 1.09419 1.22551 0.96201 0.97407 0.93466 1.21900 0.93729 0.99379 1.01001 1.21615 1.00884 0.98595 0.98244 1.19857 0.90081 0.91982 0.93589 1.86153 1.19162 1.58415 1.57638 1.23091 0.82396 1.03022 0.98353 0.92093 0.92233 0.92879 0.90012 0.91702 0.95031 0.93998 0.92874 0.87762 0.87613 0.82671 0.84793 0.84526 0.92881 0.87914 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16 2 C 0.11 1.78 5.94 -4.04 -0.02 1.76 16 3 N -0.60 -13.31 2.46 -175.06 -0.43 -13.74 16 4 C 0.25 6.70 5.16 -5.20 -0.03 6.67 16 5 C -0.52 -15.19 9.39 -34.44 -0.32 -15.52 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.52 11.66 7.67 -10.98 -0.08 11.57 16 14 O -0.54 -14.64 15.61 5.55 0.09 -14.55 16 15 C -0.09 -1.53 4.33 -29.03 -0.13 -1.65 16 16 C 0.14 2.41 5.29 -82.42 -0.44 1.98 16 17 N -0.44 -7.50 10.27 -9.36 -0.10 -7.60 16 18 C 0.06 0.82 11.18 -17.54 -0.20 0.63 16 19 C -0.14 -1.66 10.11 -39.47 -0.40 -2.06 16 20 C -0.17 -2.16 9.14 -39.13 -0.36 -2.52 16 21 C 0.09 1.49 6.67 -39.07 -0.26 1.23 16 22 O -0.30 -4.69 9.54 -19.46 -0.19 -4.87 16 23 C 0.03 0.28 9.83 101.05 0.99 1.28 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.73 7.24 -51.93 -0.38 0.35 16 27 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 28 H 0.06 0.91 6.43 -51.93 -0.33 0.58 16 29 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.10 1.56 7.21 -51.93 -0.37 1.19 16 33 H 0.11 1.62 6.77 -51.93 -0.35 1.27 16 34 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.34 6.45 -52.49 -0.34 1.00 16 37 H 0.05 0.42 7.71 -51.93 -0.40 0.02 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.58 7.69 -51.93 -0.40 0.18 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -36.65 332.15 -6.32 -42.97 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.46 Total: -0.92 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.96 Total: 2.97 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.21 Total: -47.86 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.10 Total: -19.42 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.65 -6.32 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619581973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.252 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds