Wall clock time and date at job start Tue Mar 31 2020 00:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47061 * 119.99902 * 9 7 5 12 12 H 1.48503 * 109.47075 * 240.00004 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 3 17 17 N 1.31834 * 119.65836 * 90.00054 * 16 15 13 18 18 C 1.31851 * 121.77937 * 179.97438 * 17 16 15 19 19 C 1.38248 * 120.88756 * 0.02562 * 18 17 16 20 20 C 1.38537 * 119.22319 * 359.97438 * 19 18 17 21 21 C 1.38706 * 119.65451 * 269.72015 * 16 15 13 22 22 O 1.35911 * 120.47740 * 0.02562 * 21 16 15 23 23 C 1.42895 * 117.00440 * 179.97438 * 22 21 16 24 24 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 25 25 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 27 27 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 28 28 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 29 29 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 30 30 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 31 31 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 34 34 H 1.07996 * 119.55361 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.39228 * 179.97438 * 19 18 17 36 36 H 1.07993 * 120.81663 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.46693 * 59.99844 * 23 22 21 38 38 H 1.09001 * 109.47616 * 179.97438 * 23 22 21 39 39 H 1.09000 * 109.47035 * 300.00307 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.6009 1.2403 -2.4169 11 1 5.9206 1.4179 -4.7380 12 1 6.6217 3.3970 -3.5247 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 6 2.3292 2.2258 3.6176 17 7 1.3926 3.0066 4.1189 18 6 1.6364 3.8282 5.1209 19 6 2.8951 3.9024 5.6877 20 6 3.9088 3.0991 5.1914 21 6 3.6152 2.2395 4.1373 22 8 4.5761 1.4291 3.6207 23 6 5.8748 1.5040 4.2120 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6876 -2.0285 30 1 2.0956 3.1410 -1.1385 31 1 3.6759 3.5175 -4.4431 32 1 0.9499 1.0100 2.5343 33 1 2.6281 0.4167 2.5258 34 1 0.8420 4.4517 5.5038 35 1 3.0860 4.5786 6.5079 36 1 4.9017 3.1365 5.6145 37 1 5.8086 1.2433 5.2683 38 1 6.5445 0.8074 3.7075 39 1 6.2618 2.5180 4.1115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619581973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:54 Heat of formation + Delta-G solvation = -63.589956 kcal Electronic energy + Delta-G solvation = -21945.080998 eV Core-core repulsion = 18659.279278 eV Total energy + Delta-G solvation = -3285.801720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81446 -40.44246 -39.06118 -36.93373 -34.98198 -34.04899 -32.43109 -31.57981 -29.98379 -28.46970 -28.19167 -25.09395 -24.25512 -23.82715 -23.08864 -19.99487 -19.01801 -18.63628 -18.14387 -17.98110 -17.48111 -16.80209 -16.68917 -16.20007 -15.90175 -15.29523 -14.84191 -14.80962 -14.62803 -14.45640 -14.18430 -14.03596 -13.61649 -13.30135 -13.22250 -13.02109 -12.85700 -12.68691 -12.48823 -12.34665 -12.28799 -12.15423 -11.84232 -11.68233 -10.83139 -10.65280 -10.54050 -10.50193 -9.42670 -9.29995 -8.22079 -6.36974 0.12867 0.32625 1.34860 1.37407 1.49739 1.86728 2.25627 2.30910 2.43164 2.86971 3.06947 3.33360 3.66131 3.83434 3.85155 4.09462 4.17083 4.26333 4.33449 4.35633 4.40255 4.48760 4.51156 4.67696 4.68657 4.76257 4.97880 5.00724 5.06091 5.07560 5.12487 5.22902 5.41375 5.53979 5.59180 5.87810 6.07595 6.26475 6.70673 6.80990 7.03983 7.28459 7.50574 8.85477 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.005507 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.829731 B = 5083.676731 C = 5868.903725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.970 3.030 10 H -0.266 1.266 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.509 3.491 14 O -0.596 6.596 15 C -0.071 4.071 16 C 0.095 3.905 17 N -0.471 5.471 18 C 0.046 3.954 19 C -0.127 4.127 20 C -0.168 4.168 21 C 0.075 3.925 22 O -0.330 6.330 23 C 0.017 3.983 24 H 0.038 0.962 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.023 0.977 30 H -0.009 1.009 31 H 0.267 0.733 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.169 0.831 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -6.809 20.186 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.298 3.702 14 O -0.478 6.478 15 C -0.111 4.111 16 C -0.044 4.044 17 N -0.181 5.181 18 C -0.111 4.111 19 C -0.146 4.146 20 C -0.194 4.194 21 C 0.027 3.973 22 O -0.242 6.242 23 C -0.077 4.077 24 H 0.057 0.943 25 H 0.117 0.883 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.041 0.959 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.201 0.799 35 H 0.195 0.805 36 H 0.186 0.814 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.330 -6.330 19.484 20.489 hybrid contribution 1.691 0.531 -0.411 1.820 sum 1.361 -5.800 19.073 19.982 Atomic orbital electron populations 1.22161 0.94608 1.03599 1.01593 1.21776 0.95324 0.81251 1.04016 1.48251 1.64034 1.15171 1.06006 1.18693 0.95470 0.91288 0.80390 1.21728 0.97751 1.31816 1.06449 0.92899 1.25902 1.02577 0.94453 0.96400 1.70073 1.37797 1.34335 1.14851 0.85341 0.78817 0.78004 0.78483 1.18968 1.19189 1.20807 1.20907 0.76894 0.86336 0.86064 1.90614 1.48193 1.20838 1.88108 1.20453 1.05733 0.97558 0.87375 1.20115 0.88268 0.98456 0.97551 1.67388 1.34916 1.04919 1.10860 1.23182 0.98128 0.97023 0.92812 1.22396 0.92472 0.98667 1.01044 1.22071 1.02689 0.97521 0.97151 1.20042 0.89801 0.92871 0.94564 1.86094 1.20651 1.58663 1.58835 1.23392 0.80612 1.03570 1.00165 0.94281 0.88319 0.92403 0.90653 0.88238 0.95927 0.99044 0.92432 0.85768 0.85784 0.79902 0.80462 0.81360 0.89988 0.86729 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 10.24 71.98 0.74 -3.66 16 2 C 0.10 3.25 5.94 86.38 0.51 3.76 16 3 N -0.60 -27.76 2.46 -826.15 -2.03 -29.79 16 4 C 0.26 15.09 5.16 85.63 0.44 15.53 16 5 C -0.54 -32.44 9.39 25.60 0.24 -32.20 16 6 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 9 Si 0.97 46.11 29.54 68.60 2.03 48.13 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 C 0.51 23.73 7.67 87.66 0.67 24.40 16 14 O -0.60 -34.25 15.61 -3.04 -0.05 -34.30 16 15 C -0.07 -2.44 4.33 29.10 0.13 -2.32 16 16 C 0.10 3.34 5.29 42.67 0.23 3.56 16 17 N -0.47 -15.95 10.27 -183.51 -1.88 -17.84 16 18 C 0.05 1.17 11.18 84.69 0.95 2.12 16 19 C -0.13 -2.61 10.11 22.34 0.23 -2.38 16 20 C -0.17 -3.94 9.14 22.56 0.21 -3.73 16 21 C 0.08 2.35 6.67 22.60 0.15 2.50 16 22 O -0.33 -9.99 9.54 -92.55 -0.88 -10.88 16 23 C 0.02 0.32 9.83 113.37 1.11 1.44 16 24 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.52 7.24 -2.39 -0.02 1.50 16 27 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 28 H 0.10 2.60 6.43 -2.39 -0.02 2.58 16 29 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 30 H -0.01 -0.57 7.42 -2.38 -0.02 -0.59 16 31 H 0.27 15.54 8.31 -92.72 -0.77 14.77 16 32 H 0.12 3.64 7.21 -2.38 -0.02 3.62 16 33 H 0.12 3.69 6.77 -2.39 -0.02 3.67 16 34 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.17 2.70 6.45 -2.91 -0.02 2.68 16 37 H 0.08 1.07 7.71 -2.39 -0.02 1.05 16 38 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.07 7.69 -2.39 -0.02 1.05 16 Total: -1.00 -85.03 332.15 4.57 -80.45 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.04 Total: 12.37 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.06 Total: 9.77 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.63 Total: -105.55 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.93 Total: -45.18 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -85.03 4.57 -80.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619581973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.863 kcal (2) G-P(sol) polarization free energy of solvation -85.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds