Wall clock time and date at job start Tue Mar 31 2020 01:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34880 * 125.64961 * 2 1 4 4 C 1.35631 * 109.06201 * 180.26631 * 3 2 1 5 5 C 1.39591 * 107.90713 * 359.72612 * 4 3 2 6 6 C 1.37865 * 125.64625 * 179.79748 * 2 1 3 7 7 C 1.41347 * 126.30609 * 359.97438 * 6 2 1 8 8 O 1.21447 * 120.00119 * 359.71719 * 7 6 2 9 9 C 1.50700 * 120.00228 * 179.71497 * 7 6 2 10 10 N 1.46903 * 109.47029 * 180.02562 * 9 7 6 11 11 C 1.48552 * 111.00372 * 290.12592 * 10 9 7 12 12 C 1.54383 * 104.59570 * 200.96021 * 11 10 9 13 13 C 1.54254 * 105.05852 * 23.85495 * 12 11 10 14 14 O 1.42902 * 110.32681 * 119.00032 * 13 12 11 15 15 C 1.50706 * 110.32323 * 241.10020 * 13 12 11 16 16 H 1.07997 * 119.99867 * 117.17297 * 15 13 12 17 17 C 1.37878 * 119.99931 * 297.17585 * 15 13 12 18 18 N 1.31517 * 119.99998 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99725 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46969 * 90.00074 * 19 17 15 21 21 H 1.48499 * 109.46918 * 209.99936 * 19 17 15 22 22 H 1.48499 * 109.47306 * 330.00135 * 19 17 15 23 23 C 1.48831 * 110.97006 * 174.70413 * 10 9 7 24 24 H 1.09002 * 109.47467 * 270.20519 * 1 2 3 25 25 H 1.09003 * 109.46900 * 30.20224 * 1 2 3 26 26 H 1.09001 * 109.47228 * 150.20018 * 1 2 3 27 27 H 1.08000 * 125.46558 * 359.97438 * 3 2 1 28 28 H 1.08005 * 126.05007 * 179.75119 * 4 3 2 29 29 H 1.07997 * 126.53656 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47089 * 60.00537 * 9 7 6 31 31 H 1.08999 * 109.47010 * 299.99932 * 9 7 6 32 32 H 1.09007 * 110.41265 * 82.18140 * 11 10 9 33 33 H 1.09002 * 110.51269 * 319.79360 * 11 10 9 34 34 H 1.08993 * 110.32263 * 264.95375 * 12 11 10 35 35 H 1.09004 * 110.40395 * 142.79428 * 12 11 10 36 36 H 0.96701 * 114.00424 * 62.81951 * 14 13 12 37 37 H 0.96998 * 119.99694 * 180.02562 * 18 17 15 38 38 H 1.09001 * 110.45001 * 40.32887 * 23 10 9 39 39 H 1.08994 * 110.49606 * 277.80286 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0960 0.0000 4 6 3.5509 0.7088 -0.0060 5 6 3.5831 -0.6867 -0.0035 6 6 2.2684 -1.1203 0.0040 7 6 1.8305 -2.4642 0.0092 8 8 0.6424 -2.7158 0.0158 9 6 2.8379 -3.5851 0.0066 10 7 2.1352 -4.8751 0.0125 11 6 1.4676 -5.1118 1.3183 12 6 1.2601 -6.6405 1.3776 13 6 2.3292 -7.2270 0.4329 14 8 3.2154 -8.0830 1.1567 15 6 1.6738 -7.9852 -0.6927 16 1 1.8020 -7.6548 -1.7128 17 6 0.9104 -9.1005 -0.4200 18 7 0.7546 -9.5030 0.8224 19 14 0.0975 -10.0398 -1.8151 20 1 1.0196 -11.0963 -2.3038 21 1 -1.1571 -10.6654 -1.3255 22 1 -0.2161 -9.1044 -2.9250 23 6 3.0949 -6.0051 -0.1182 24 1 -0.3634 0.0037 1.0276 25 1 -0.3633 0.8882 -0.5170 26 1 -0.3634 -0.8918 -0.5107 27 1 1.9015 2.1179 -0.0004 28 1 4.4094 1.3643 -0.0112 29 1 4.4654 -1.3095 -0.0073 30 1 3.4674 -3.5098 0.8933 31 1 3.4584 -3.5138 -0.8867 32 1 0.5078 -4.5962 1.3536 33 1 2.1054 -4.7826 2.1386 34 1 0.2614 -6.9008 1.0274 35 1 1.4114 -7.0054 2.3936 36 1 2.7850 -8.8571 1.5449 37 1 0.2179 -10.2879 1.0141 38 1 3.9885 -5.8165 0.4768 39 1 3.3595 -6.1621 -1.1638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000646031993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:41 Heat of formation + Delta-G solvation = -18.781639 kcal Electronic energy + Delta-G solvation = -21848.643380 eV Core-core repulsion = 18564.784694 eV Total energy + Delta-G solvation = -3283.858686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58065 -39.04119 -37.62627 -34.67286 -33.13959 -32.01233 -30.98993 -29.44802 -27.89903 -26.67338 -26.14448 -24.19725 -22.33560 -20.80275 -20.11504 -19.46120 -18.81808 -17.22231 -16.97292 -15.80350 -15.42125 -15.27398 -14.80957 -14.64488 -14.41352 -13.86186 -13.70536 -13.46550 -13.24740 -12.85620 -12.52077 -12.39856 -12.21953 -12.10935 -12.08137 -11.60498 -11.28191 -11.06972 -10.84991 -10.47435 -10.41253 -10.26340 -9.89188 -9.47489 -8.94649 -8.89994 -8.49592 -8.35638 -8.05465 -7.78489 -6.10112 -4.14948 1.13009 2.54826 2.65800 3.22942 3.31056 3.37506 3.42981 4.15122 4.41709 4.65092 4.73591 4.81967 5.05638 5.18357 5.22263 5.27005 5.43738 5.47541 5.52381 5.64621 5.80965 5.92549 6.03044 6.07695 6.20612 6.25921 6.42229 6.58620 6.64537 6.84354 6.92186 7.05331 7.14665 7.28162 7.55648 7.70256 7.72189 7.89408 7.92601 8.27913 8.87156 9.49587 9.58849 10.97700 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.004029 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.029859 B = 6947.525682 C = 7285.829892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.409 5.409 3 C 0.018 3.982 4 C -0.216 4.216 5 C -0.120 4.120 6 C -0.086 4.086 7 C 0.418 3.582 8 O -0.450 6.450 9 C 0.010 3.990 10 N -0.487 5.487 11 C 0.033 3.967 12 C -0.120 4.120 13 C 0.249 3.751 14 O -0.596 6.596 15 C -0.517 4.517 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.052 3.948 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.166 0.834 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.384 0.616 37 H 0.265 0.735 38 H 0.033 0.967 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 19.146 0.228 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.081 5.081 3 C -0.120 4.120 4 C -0.240 4.240 5 C -0.146 4.146 6 C -0.196 4.196 7 C 0.297 3.703 8 O -0.326 6.326 9 C -0.120 4.120 10 N -0.211 5.211 11 C -0.095 4.095 12 C -0.158 4.158 13 C 0.209 3.791 14 O -0.405 6.405 15 C -0.555 4.555 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.543 5.543 19 Si 0.727 3.273 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.075 4.075 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.184 0.816 28 H 0.160 0.840 29 H 0.166 0.834 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.234 0.766 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.746 19.295 -0.298 19.376 hybrid contribution -0.272 -0.702 0.180 0.774 sum 1.474 18.593 -0.118 18.651 Atomic orbital electron populations 1.22333 0.76103 1.05377 1.04024 1.43964 1.06950 1.05460 1.51727 1.21996 0.91018 0.91726 1.07238 1.20870 0.95899 0.95281 1.11947 1.21618 0.94832 0.95289 1.02814 1.20028 0.91014 0.89110 1.19439 1.20270 0.90264 0.87229 0.72546 1.90535 1.18748 1.86695 1.36613 1.22439 0.95622 0.90963 1.02976 1.65321 1.24682 0.99208 1.31899 1.23214 0.98573 0.99257 0.88462 1.22846 1.02832 0.90839 0.99317 1.19236 0.84865 0.86166 0.88809 1.86063 1.40767 1.40509 1.73152 1.21658 1.29653 1.10560 0.93654 0.91941 1.25002 0.95631 0.97117 0.95832 1.69663 1.41095 1.25624 1.17896 0.86472 0.78666 0.79844 0.82303 1.20652 1.21254 1.19770 1.23081 0.92938 0.90749 1.00780 0.90504 0.89976 0.87637 0.81637 0.84021 0.83400 0.91756 0.87739 0.90657 0.95796 0.90713 0.93124 0.76552 0.92502 0.94881 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 10.52 59.85 0.63 1.24 16 2 N -0.41 -4.80 3.15 -121.91 -0.38 -5.18 16 3 C 0.02 0.17 11.34 -17.14 -0.19 -0.03 16 4 C -0.22 -2.13 10.81 -40.01 -0.43 -2.57 16 5 C -0.12 -1.37 10.31 -39.00 -0.40 -1.77 16 6 C -0.09 -1.16 6.70 -83.90 -0.56 -1.72 16 7 C 0.42 6.70 6.74 -33.13 -0.22 6.48 16 8 O -0.45 -8.42 13.01 5.41 0.07 -8.35 16 9 C 0.01 0.16 4.56 -4.97 -0.02 0.14 16 10 N -0.49 -10.04 5.07 -231.17 -1.17 -11.21 16 11 C 0.03 0.69 5.80 -2.18 -0.01 0.68 16 12 C -0.12 -2.92 5.60 -25.35 -0.14 -3.07 16 13 C 0.25 6.39 1.05 -90.39 -0.10 6.30 16 14 O -0.60 -15.81 12.94 -35.23 -0.46 -16.26 16 15 C -0.52 -14.36 8.08 -34.44 -0.28 -14.64 16 16 H 0.06 1.75 7.54 -52.49 -0.40 1.35 16 17 C 0.06 1.78 5.04 -17.82 -0.09 1.69 16 18 N -0.90 -24.80 10.82 55.43 0.60 -24.20 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.05 1.15 5.78 -2.03 -0.01 1.13 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.11 1.26 6.27 -51.93 -0.33 0.93 16 27 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 28 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 29 H 0.15 1.41 7.93 -52.49 -0.42 0.99 16 30 H 0.06 0.94 7.89 -51.93 -0.41 0.53 16 31 H 0.10 1.46 8.13 -51.93 -0.42 1.04 16 32 H 0.08 1.61 6.91 -51.92 -0.36 1.25 16 33 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 34 H 0.07 2.01 7.33 -51.93 -0.38 1.62 16 35 H 0.05 1.23 7.98 -51.93 -0.41 0.82 16 36 H 0.38 10.33 7.19 45.56 0.33 10.66 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.03 0.69 7.94 -51.93 -0.41 0.28 16 39 H 0.08 1.73 7.68 -51.93 -0.40 1.33 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -31.50 319.50 -8.22 -39.73 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.84 Total: 10.37 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.84 Total: -6.14 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.96 Total: -40.60 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.39 Total: -24.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.50 -8.22 -39.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000646031993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.945 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds