Wall clock time and date at job start Tue Mar 31 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34880 * 125.64961 * 2 1 4 4 C 1.35631 * 109.06201 * 180.26631 * 3 2 1 5 5 C 1.39591 * 107.90713 * 359.72612 * 4 3 2 6 6 C 1.37865 * 125.64625 * 179.79748 * 2 1 3 7 7 C 1.41347 * 126.30609 * 359.97438 * 6 2 1 8 8 O 1.21447 * 120.00119 * 359.71719 * 7 6 2 9 9 C 1.50700 * 120.00228 * 179.71497 * 7 6 2 10 10 N 1.46903 * 109.47029 * 180.02562 * 9 7 6 11 11 C 1.48552 * 111.00372 * 290.12592 * 10 9 7 12 12 C 1.54383 * 104.59570 * 200.96021 * 11 10 9 13 13 C 1.54254 * 105.05852 * 23.85495 * 12 11 10 14 14 O 1.42902 * 110.32681 * 119.00032 * 13 12 11 15 15 C 1.50706 * 110.32323 * 241.10020 * 13 12 11 16 16 H 1.07997 * 119.99867 * 117.17297 * 15 13 12 17 17 C 1.37878 * 119.99931 * 297.17585 * 15 13 12 18 18 N 1.31517 * 119.99998 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99725 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46969 * 90.00074 * 19 17 15 21 21 H 1.48499 * 109.46918 * 209.99936 * 19 17 15 22 22 H 1.48499 * 109.47306 * 330.00135 * 19 17 15 23 23 C 1.48831 * 110.97006 * 174.70413 * 10 9 7 24 24 H 1.09002 * 109.47467 * 270.20519 * 1 2 3 25 25 H 1.09003 * 109.46900 * 30.20224 * 1 2 3 26 26 H 1.09001 * 109.47228 * 150.20018 * 1 2 3 27 27 H 1.08000 * 125.46558 * 359.97438 * 3 2 1 28 28 H 1.08005 * 126.05007 * 179.75119 * 4 3 2 29 29 H 1.07997 * 126.53656 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47089 * 60.00537 * 9 7 6 31 31 H 1.08999 * 109.47010 * 299.99932 * 9 7 6 32 32 H 1.09007 * 110.41265 * 82.18140 * 11 10 9 33 33 H 1.09002 * 110.51269 * 319.79360 * 11 10 9 34 34 H 1.08993 * 110.32263 * 264.95375 * 12 11 10 35 35 H 1.09004 * 110.40395 * 142.79428 * 12 11 10 36 36 H 0.96701 * 114.00424 * 62.81951 * 14 13 12 37 37 H 0.96998 * 119.99694 * 180.02562 * 18 17 15 38 38 H 1.09001 * 110.45001 * 40.32887 * 23 10 9 39 39 H 1.08994 * 110.49606 * 277.80286 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0960 0.0000 4 6 3.5509 0.7088 -0.0060 5 6 3.5831 -0.6867 -0.0035 6 6 2.2684 -1.1203 0.0040 7 6 1.8305 -2.4642 0.0092 8 8 0.6424 -2.7158 0.0158 9 6 2.8379 -3.5851 0.0066 10 7 2.1352 -4.8751 0.0125 11 6 1.4676 -5.1118 1.3183 12 6 1.2601 -6.6405 1.3776 13 6 2.3292 -7.2270 0.4329 14 8 3.2154 -8.0830 1.1567 15 6 1.6738 -7.9852 -0.6927 16 1 1.8020 -7.6548 -1.7128 17 6 0.9104 -9.1005 -0.4200 18 7 0.7546 -9.5030 0.8224 19 14 0.0975 -10.0398 -1.8151 20 1 1.0196 -11.0963 -2.3038 21 1 -1.1571 -10.6654 -1.3255 22 1 -0.2161 -9.1044 -2.9250 23 6 3.0949 -6.0051 -0.1182 24 1 -0.3634 0.0037 1.0276 25 1 -0.3633 0.8882 -0.5170 26 1 -0.3634 -0.8918 -0.5107 27 1 1.9015 2.1179 -0.0004 28 1 4.4094 1.3643 -0.0112 29 1 4.4654 -1.3095 -0.0073 30 1 3.4674 -3.5098 0.8933 31 1 3.4584 -3.5138 -0.8867 32 1 0.5078 -4.5962 1.3536 33 1 2.1054 -4.7826 2.1386 34 1 0.2614 -6.9008 1.0274 35 1 1.4114 -7.0054 2.3936 36 1 2.7850 -8.8571 1.5449 37 1 0.2179 -10.2879 1.0141 38 1 3.9885 -5.8165 0.4768 39 1 3.3595 -6.1621 -1.1638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000646031993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:39 Heat of formation + Delta-G solvation = -41.368748 kcal Electronic energy + Delta-G solvation = -21849.622831 eV Core-core repulsion = 18564.784694 eV Total energy + Delta-G solvation = -3284.838136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44598 -40.46595 -39.19545 -36.50575 -34.13208 -33.98240 -32.37048 -30.73786 -29.75575 -27.70965 -27.42837 -25.99745 -23.50805 -22.15405 -21.35937 -21.18317 -19.85269 -19.04917 -18.20171 -17.05104 -16.91050 -16.76294 -16.50222 -15.88018 -15.68907 -15.49054 -15.30845 -14.51443 -14.26766 -14.11095 -14.04357 -13.95920 -13.41542 -13.25404 -13.16343 -13.07546 -12.97675 -12.87301 -12.63422 -12.36301 -12.27443 -12.08761 -11.90102 -11.05076 -10.66447 -10.53750 -10.12405 -9.70319 -9.38130 -9.18451 -8.19111 -6.31343 0.13699 1.40554 1.41810 1.52365 1.75510 1.86730 2.24938 2.41175 2.83532 3.10429 3.39156 3.93364 3.96005 4.10183 4.17628 4.26920 4.31599 4.34655 4.40586 4.44057 4.47960 4.54226 4.58969 4.64152 4.71756 4.81309 5.03081 5.18757 5.25082 5.29818 5.35078 5.63286 5.76002 5.81892 5.93168 5.99526 6.11076 6.21960 6.32368 6.73063 6.73585 7.36842 7.45365 8.87162 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.004029 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.029859 B = 6947.525682 C = 7285.829892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.419 5.419 3 C 0.035 3.965 4 C -0.226 4.226 5 C -0.111 4.111 6 C -0.131 4.131 7 C 0.419 3.581 8 O -0.494 6.494 9 C 0.008 3.992 10 N -0.503 5.503 11 C 0.047 3.953 12 C -0.112 4.112 13 C 0.232 3.768 14 O -0.600 6.600 15 C -0.542 4.542 16 H 0.052 0.948 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.958 3.042 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.275 1.275 23 C 0.062 3.938 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.205 0.795 28 H 0.169 0.831 29 H 0.164 0.836 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.378 0.622 37 H 0.268 0.732 38 H 0.047 0.953 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 21.566 -0.201 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.091 5.091 3 C -0.103 4.103 4 C -0.250 4.250 5 C -0.137 4.137 6 C -0.240 4.240 7 C 0.302 3.698 8 O -0.374 6.374 9 C -0.121 4.121 10 N -0.228 5.228 11 C -0.081 4.081 12 C -0.151 4.151 13 C 0.193 3.807 14 O -0.408 6.408 15 C -0.581 4.581 16 H 0.070 0.930 17 C -0.175 4.175 18 N -0.558 5.558 19 Si 0.784 3.216 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.200 1.200 23 C -0.066 4.066 24 H 0.098 0.902 25 H 0.135 0.865 26 H 0.095 0.905 27 H 0.222 0.778 28 H 0.186 0.814 29 H 0.181 0.819 30 H 0.103 0.897 31 H 0.144 0.856 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.228 0.772 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.776 21.721 -0.726 21.910 hybrid contribution -0.535 -1.329 0.324 1.469 sum 2.240 20.391 -0.402 20.518 Atomic orbital electron populations 1.22377 0.75522 1.05642 1.04334 1.44191 1.07602 1.05598 1.51753 1.22754 0.90823 0.92708 1.03972 1.21288 0.97093 0.94863 1.11711 1.21982 0.94427 0.96527 1.00774 1.19808 0.92283 0.88620 1.23268 1.20391 0.89517 0.88432 0.71481 1.90528 1.20055 1.87297 1.39490 1.22579 0.95914 0.88677 1.04893 1.65213 1.25279 1.00778 1.31525 1.23008 0.98960 0.96514 0.89648 1.22637 1.00679 0.93368 0.98381 1.19484 0.85652 0.87050 0.88556 1.86053 1.41086 1.40465 1.73216 1.21889 1.30766 1.11586 0.93827 0.92976 1.25687 0.95989 0.97827 0.98038 1.69741 1.41130 1.25781 1.19101 0.85553 0.77931 0.78556 0.79536 1.19847 1.20686 1.20000 1.22904 0.93195 0.89905 1.00571 0.90223 0.86520 0.90484 0.77775 0.81378 0.81866 0.89737 0.85637 0.91241 0.94003 0.94022 0.93838 0.77225 0.92297 0.93493 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 10.52 127.77 1.34 2.48 16 2 N -0.42 -8.98 3.15 -539.63 -1.70 -10.68 16 3 C 0.04 0.54 11.34 83.62 0.95 1.49 16 4 C -0.23 -3.61 10.81 21.99 0.24 -3.37 16 5 C -0.11 -2.23 10.31 22.64 0.23 -2.00 16 6 C -0.13 -3.37 6.70 39.01 0.26 -3.10 16 7 C 0.42 13.31 6.74 26.45 0.18 13.49 16 8 O -0.49 -19.00 13.01 -3.55 -0.05 -19.04 16 9 C 0.01 0.26 4.56 85.56 0.39 0.65 16 10 N -0.50 -20.69 5.07 -885.29 -4.49 -25.18 16 11 C 0.05 1.99 5.80 86.45 0.50 2.49 16 12 C -0.11 -5.62 5.60 31.49 0.18 -5.44 16 13 C 0.23 12.11 1.05 -10.65 -0.01 12.09 16 14 O -0.60 -32.25 12.94 -148.98 -1.93 -34.18 16 15 C -0.54 -30.75 8.08 25.60 0.21 -30.54 16 16 H 0.05 2.98 7.54 -2.91 -0.02 2.96 16 17 C 0.02 1.33 5.04 84.65 0.43 1.75 16 18 N -0.92 -51.27 10.82 21.45 0.23 -51.04 16 19 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 C 0.06 2.72 5.78 86.40 0.50 3.22 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 1.89 6.27 -2.39 -0.01 1.87 16 27 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 28 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.16 2.61 7.93 -2.91 -0.02 2.58 16 30 H 0.08 2.28 7.89 -2.39 -0.02 2.26 16 31 H 0.13 3.30 8.13 -2.39 -0.02 3.28 16 32 H 0.07 3.05 6.91 -2.38 -0.02 3.04 16 33 H 0.04 1.62 7.83 -2.39 -0.02 1.60 16 34 H 0.04 2.32 7.33 -2.39 -0.02 2.30 16 35 H 0.04 2.18 7.98 -2.39 -0.02 2.16 16 36 H 0.38 20.83 7.19 -74.06 -0.53 20.30 16 37 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.05 1.91 7.94 -2.39 -0.02 1.89 16 39 H 0.08 3.37 7.68 -2.39 -0.02 3.35 16 Total: -1.00 -69.42 319.50 0.02 -69.40 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.53 Total: 31.01 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.39 Total: -6.79 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -5.95 Total: -86.89 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -1.97 Total: -53.22 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.42 0.02 -69.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000646031993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.031 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds