Wall clock time and date at job start Tue Mar 31 2020 00:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20822 * 119.99927 * 2 1 4 4 C 1.47762 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.42441 * 126.96621 * 180.28460 * 4 2 1 6 6 C 1.35280 * 103.91417 * 180.12208 * 5 4 2 7 7 C 1.50696 * 126.64455 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47294 * 89.70337 * 7 6 5 9 9 C 1.46847 * 111.00067 * 293.95364 * 8 7 6 10 10 C 1.53038 * 109.52390 * 185.83855 * 9 8 7 11 11 C 1.53120 * 109.28065 * 300.82302 * 10 9 8 12 12 C 1.53119 * 109.15793 * 57.65412 * 11 10 9 13 13 H 1.08996 * 109.50606 * 62.32699 * 12 11 10 14 14 C 1.50702 * 109.50169 * 182.40723 * 12 11 10 15 15 H 1.07996 * 120.00131 * 114.44348 * 14 12 11 16 16 C 1.37882 * 119.99807 * 294.43486 * 14 12 11 17 17 N 1.31512 * 119.99849 * 161.78346 * 16 14 12 18 18 Si 1.86800 * 120.00107 * 341.78689 * 16 14 12 19 19 H 1.48494 * 109.47066 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47295 * 59.99673 * 18 16 14 21 21 H 1.48505 * 109.46714 * 299.99597 * 18 16 14 22 22 C 1.46839 * 111.00306 * 58.16768 * 8 7 6 23 23 O 1.34019 * 106.71639 * 359.66325 * 6 5 4 24 24 N 1.20905 * 111.90017 * 0.23458 * 23 6 5 25 25 H 1.08997 * 109.47529 * 269.99843 * 1 2 3 26 26 H 1.08997 * 109.47136 * 30.00307 * 1 2 3 27 27 H 1.09008 * 109.46922 * 149.99511 * 1 2 3 28 28 H 1.07993 * 128.04676 * 0.02562 * 5 4 2 29 29 H 1.09009 * 109.46924 * 329.70235 * 7 6 5 30 30 H 1.08997 * 109.47516 * 209.70628 * 7 6 5 31 31 H 1.09006 * 109.46324 * 65.82806 * 9 8 7 32 32 H 1.09001 * 109.46884 * 305.85658 * 9 8 7 33 33 H 1.09003 * 109.50443 * 180.88280 * 10 9 8 34 34 H 1.09004 * 109.53342 * 60.78713 * 10 9 8 35 35 H 1.09003 * 109.52289 * 297.74978 * 11 10 9 36 36 H 1.09000 * 109.57397 * 177.58923 * 11 10 9 37 37 H 0.97000 * 119.99868 * 354.67642 * 17 16 14 38 38 H 1.09006 * 109.46328 * 54.13885 * 22 8 7 39 39 H 1.09009 * 109.46232 * 294.17490 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 6 2.2458 -1.2796 -0.0006 5 6 3.6597 -1.4523 0.0050 6 6 3.8234 -2.7952 -0.0010 7 6 5.1325 -3.5417 0.0006 8 7 5.5557 -3.7850 1.3861 9 6 5.8719 -2.5239 2.0689 10 6 6.4456 -2.8231 3.4558 11 6 5.4200 -3.6207 4.2660 12 6 5.0718 -4.9058 3.5098 13 1 5.9653 -5.5218 3.4083 14 6 4.0188 -5.6684 4.2718 15 1 3.0348 -5.8014 3.8470 16 6 4.3117 -6.1966 5.5113 17 7 3.3384 -6.5389 6.3269 18 14 6.0909 -6.4257 6.0323 19 1 6.1358 -7.0071 7.3980 20 1 6.7805 -5.1106 6.0306 21 1 6.7707 -7.3424 5.0820 22 6 4.5379 -4.5463 2.1214 23 8 2.5960 -3.3332 -0.0018 24 7 1.7326 -2.4868 -0.0016 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 4.4235 -0.6889 0.0109 29 1 5.8898 -2.9482 -0.5118 30 1 5.0081 -4.4945 -0.5139 31 1 4.9641 -1.9293 2.1721 32 1 6.6053 -1.9683 1.4846 33 1 6.6656 -1.8866 3.9684 34 1 7.3612 -3.4057 3.3535 35 1 4.5188 -3.0228 4.4023 36 1 5.8402 -3.8734 5.2394 37 1 2.4173 -6.3492 6.0893 38 1 4.3024 -5.4596 1.5750 39 1 3.6364 -3.9421 2.2242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000661152720.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:55 Heat of formation + Delta-G solvation = 21.609429 kcal Electronic energy + Delta-G solvation = -22090.863220 eV Core-core repulsion = 18808.756023 eV Total energy + Delta-G solvation = -3282.107197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.12497 -39.58204 -38.73674 -34.69107 -34.04744 -32.61832 -31.28817 -30.28914 -30.18825 -26.72023 -24.88400 -24.44933 -23.11469 -22.19664 -21.10402 -19.45774 -18.83761 -17.87374 -17.54904 -17.34404 -16.22075 -15.40476 -15.21775 -15.14407 -14.83457 -14.38634 -14.05855 -13.68151 -13.45551 -13.10930 -12.79310 -12.57919 -12.53347 -12.38448 -12.04901 -11.96915 -11.51472 -11.17247 -10.68196 -10.66962 -10.49562 -10.37036 -10.18312 -9.92534 -9.76353 -9.52668 -9.31043 -8.73791 -8.24880 -8.21419 -6.43383 -4.05505 0.71464 1.45243 2.60998 2.86631 3.40436 3.40693 3.46390 3.64118 4.01261 4.19903 4.52728 4.61823 4.85270 4.91146 5.03173 5.11803 5.23044 5.27345 5.29626 5.41565 5.46125 5.58786 5.66378 5.74957 5.77745 5.92723 6.07515 6.21729 6.29978 6.40217 6.58934 6.76269 6.86117 7.00971 7.19663 7.31741 7.35568 7.57312 7.93499 8.17231 8.39002 8.90435 9.62058 10.94523 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.004839 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.315723 B = 5784.555167 C = 6162.043164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.443 3.557 3 O -0.443 6.443 4 C -0.069 4.069 5 C -0.189 4.189 6 C -0.050 4.050 7 C 0.128 3.872 8 N -0.521 5.521 9 C 0.054 3.946 10 C -0.120 4.120 11 C -0.127 4.127 12 C 0.028 3.972 13 H 0.031 0.969 14 C -0.600 4.600 15 H 0.054 0.946 16 C 0.035 3.965 17 N -0.906 5.906 18 Si 1.042 2.958 19 H -0.288 1.288 20 H -0.273 1.273 21 H -0.283 1.283 22 C 0.072 3.928 23 O 0.133 5.867 24 N -0.318 5.318 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.267 0.733 38 H 0.071 0.929 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 10.434 -14.025 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.318 3.682 3 O -0.313 6.313 4 C -0.226 4.226 5 C -0.213 4.213 6 C -0.115 4.115 7 C -0.001 4.001 8 N -0.243 5.243 9 C -0.074 4.074 10 C -0.157 4.157 11 C -0.164 4.164 12 C 0.008 3.992 13 H 0.049 0.951 14 C -0.638 4.638 15 H 0.072 0.928 16 C -0.170 4.170 17 N -0.540 5.540 18 Si 0.870 3.130 19 H -0.214 1.214 20 H -0.200 1.200 21 H -0.209 1.209 22 C -0.055 4.055 23 O 0.055 5.945 24 N -0.017 5.017 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.193 0.807 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.897 9.725 -12.801 16.188 hybrid contribution -1.244 1.549 -1.139 2.290 sum 0.653 11.274 -13.940 17.940 Atomic orbital electron populations 1.22184 0.92105 1.05309 1.05426 1.21500 0.91503 0.84724 0.70510 1.90451 1.72263 1.32853 1.35720 1.24143 0.93802 0.95068 1.09549 1.22581 0.95438 0.96092 1.07173 1.26006 0.89589 0.93949 1.01964 1.21225 0.85379 0.99969 0.93575 1.62508 1.42276 1.19089 1.00471 1.22161 0.99036 0.90219 0.95983 1.21670 0.99962 0.99846 0.94262 1.22145 0.96847 0.98099 0.99349 1.18996 0.97214 0.92956 0.89987 0.95053 1.21935 0.98778 1.38550 1.04524 0.92766 1.25734 1.05461 0.93255 0.92579 1.70840 1.01120 1.45641 1.36398 0.84110 0.75613 0.77102 0.76149 1.21442 1.19972 1.20884 1.22252 0.90905 0.96004 0.96310 1.84851 1.12407 1.32389 1.64881 1.74213 1.14588 0.98614 1.14336 0.87884 0.88899 0.89053 0.80667 0.87444 0.88013 0.95019 0.91497 0.92707 0.91643 0.93481 0.91877 0.92296 0.91101 0.95638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 10.17 36.00 0.37 -1.40 16 2 C 0.44 5.63 7.27 -30.42 -0.22 5.41 16 3 O -0.44 -6.54 17.67 5.95 0.11 -6.44 16 4 C -0.07 -0.98 7.11 -82.64 -0.59 -1.56 16 5 C -0.19 -2.49 9.71 -39.02 -0.38 -2.87 16 6 C -0.05 -0.67 5.00 -35.36 -0.18 -0.84 16 7 C 0.13 1.52 5.93 -4.98 -0.03 1.49 16 8 N -0.52 -8.13 4.86 -236.11 -1.15 -9.28 16 9 C 0.05 0.81 5.00 -3.83 -0.02 0.79 16 10 C -0.12 -2.01 6.09 -26.65 -0.16 -2.18 16 11 C -0.13 -2.69 4.97 -26.61 -0.13 -2.83 16 12 C 0.03 0.64 1.84 -91.69 -0.17 0.47 16 13 H 0.03 0.74 6.79 -51.93 -0.35 0.38 16 14 C -0.60 -16.56 8.82 -34.44 -0.30 -16.86 16 15 H 0.05 1.62 7.99 -52.49 -0.42 1.21 16 16 C 0.03 0.99 5.34 -17.82 -0.10 0.90 16 17 N -0.91 -27.72 13.70 55.43 0.76 -26.96 16 18 Si 1.04 24.90 26.42 -169.99 -4.49 20.41 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.00 5.57 56.52 0.32 -5.69 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.07 1.41 4.20 -3.84 -0.02 1.39 16 23 O 0.13 2.02 10.70 17.24 0.18 2.21 16 24 N -0.32 -4.79 11.86 33.25 0.39 -4.40 16 25 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.79 7.97 -51.92 -0.41 0.38 16 28 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.11 0.97 8.06 -51.92 -0.42 0.55 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 32 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.42 4.86 -51.93 -0.25 1.16 16 37 H 0.27 8.18 8.73 -40.82 -0.36 7.82 16 38 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 39 H 0.03 0.54 6.93 -51.92 -0.36 0.18 16 LS Contribution 317.53 15.07 4.79 4.79 Total: -1.00 -31.37 317.53 -6.94 -38.31 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.60 Total: -0.54 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.93 Total: -18.10 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.01 Total: -40.64 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.29 Total: -4.23 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -4.49 Total: 20.41 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.37 -6.94 -38.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661152720.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.918 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds