Wall clock time and date at job start Tue Mar 31 2020 00:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20822 * 119.99927 * 2 1 4 4 C 1.47762 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.42441 * 126.96621 * 180.28460 * 4 2 1 6 6 C 1.35280 * 103.91417 * 180.12208 * 5 4 2 7 7 C 1.50696 * 126.64455 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47294 * 89.70337 * 7 6 5 9 9 C 1.46847 * 111.00067 * 293.95364 * 8 7 6 10 10 C 1.53038 * 109.52390 * 185.83855 * 9 8 7 11 11 C 1.53120 * 109.28065 * 300.82302 * 10 9 8 12 12 C 1.53119 * 109.15793 * 57.65412 * 11 10 9 13 13 H 1.08996 * 109.50606 * 62.32699 * 12 11 10 14 14 C 1.50702 * 109.50169 * 182.40723 * 12 11 10 15 15 H 1.07996 * 120.00131 * 114.44348 * 14 12 11 16 16 C 1.37882 * 119.99807 * 294.43486 * 14 12 11 17 17 N 1.31512 * 119.99849 * 161.78346 * 16 14 12 18 18 Si 1.86800 * 120.00107 * 341.78689 * 16 14 12 19 19 H 1.48494 * 109.47066 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47295 * 59.99673 * 18 16 14 21 21 H 1.48505 * 109.46714 * 299.99597 * 18 16 14 22 22 C 1.46839 * 111.00306 * 58.16768 * 8 7 6 23 23 O 1.34019 * 106.71639 * 359.66325 * 6 5 4 24 24 N 1.20905 * 111.90017 * 0.23458 * 23 6 5 25 25 H 1.08997 * 109.47529 * 269.99843 * 1 2 3 26 26 H 1.08997 * 109.47136 * 30.00307 * 1 2 3 27 27 H 1.09008 * 109.46922 * 149.99511 * 1 2 3 28 28 H 1.07993 * 128.04676 * 0.02562 * 5 4 2 29 29 H 1.09009 * 109.46924 * 329.70235 * 7 6 5 30 30 H 1.08997 * 109.47516 * 209.70628 * 7 6 5 31 31 H 1.09006 * 109.46324 * 65.82806 * 9 8 7 32 32 H 1.09001 * 109.46884 * 305.85658 * 9 8 7 33 33 H 1.09003 * 109.50443 * 180.88280 * 10 9 8 34 34 H 1.09004 * 109.53342 * 60.78713 * 10 9 8 35 35 H 1.09003 * 109.52289 * 297.74978 * 11 10 9 36 36 H 1.09000 * 109.57397 * 177.58923 * 11 10 9 37 37 H 0.97000 * 119.99868 * 354.67642 * 17 16 14 38 38 H 1.09006 * 109.46328 * 54.13885 * 22 8 7 39 39 H 1.09009 * 109.46232 * 294.17490 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 6 2.2458 -1.2796 -0.0006 5 6 3.6597 -1.4523 0.0050 6 6 3.8234 -2.7952 -0.0010 7 6 5.1325 -3.5417 0.0006 8 7 5.5557 -3.7850 1.3861 9 6 5.8719 -2.5239 2.0689 10 6 6.4456 -2.8231 3.4558 11 6 5.4200 -3.6207 4.2660 12 6 5.0718 -4.9058 3.5098 13 1 5.9653 -5.5218 3.4083 14 6 4.0188 -5.6684 4.2718 15 1 3.0348 -5.8014 3.8470 16 6 4.3117 -6.1966 5.5113 17 7 3.3384 -6.5389 6.3269 18 14 6.0909 -6.4257 6.0323 19 1 6.1358 -7.0071 7.3980 20 1 6.7805 -5.1106 6.0306 21 1 6.7707 -7.3424 5.0820 22 6 4.5379 -4.5463 2.1214 23 8 2.5960 -3.3332 -0.0018 24 7 1.7326 -2.4868 -0.0016 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 4.4235 -0.6889 0.0109 29 1 5.8898 -2.9482 -0.5118 30 1 5.0081 -4.4945 -0.5139 31 1 4.9641 -1.9293 2.1721 32 1 6.6053 -1.9683 1.4846 33 1 6.6656 -1.8866 3.9684 34 1 7.3612 -3.4057 3.3535 35 1 4.5188 -3.0228 4.4023 36 1 5.8402 -3.8734 5.2394 37 1 2.4173 -6.3492 6.0893 38 1 4.3024 -5.4596 1.5750 39 1 3.6364 -3.9421 2.2242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000661152720.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:55 Heat of formation + Delta-G solvation = -0.118602 kcal Electronic energy + Delta-G solvation = -22091.805418 eV Core-core repulsion = 18808.756023 eV Total energy + Delta-G solvation = -3283.049396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.20764 -40.61053 -40.11020 -36.20026 -35.16920 -34.40946 -32.51303 -31.94147 -31.10470 -27.91913 -26.60392 -25.62439 -24.34874 -23.42322 -22.71653 -20.76236 -20.14031 -19.66824 -18.92240 -18.54207 -17.26516 -16.70208 -16.34312 -16.17247 -16.04072 -15.71907 -15.48519 -15.16502 -14.84431 -14.50728 -14.41155 -13.92034 -13.64556 -13.40247 -13.31800 -13.22023 -12.89160 -12.57048 -12.29628 -12.16917 -11.82038 -11.71487 -11.62548 -11.44197 -11.36974 -11.07082 -10.72462 -10.63916 -10.40506 -9.51500 -8.72487 -6.34828 -0.33654 0.42617 1.48528 1.56013 1.58778 1.75662 1.85879 2.44380 2.52972 2.93069 3.05581 3.07357 3.67144 3.85911 4.00487 4.02844 4.09906 4.16305 4.22742 4.37848 4.41633 4.45850 4.54037 4.64954 4.67860 4.76525 4.82930 4.84505 4.93175 4.94555 5.02756 5.22461 5.26331 5.50775 5.73858 5.82015 6.02865 6.04321 6.08887 6.23717 6.58503 6.86105 7.42061 8.63936 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.004839 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.315723 B = 5784.555167 C = 6162.043164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.443 3.557 3 O -0.466 6.466 4 C -0.081 4.081 5 C -0.190 4.190 6 C -0.051 4.051 7 C 0.129 3.871 8 N -0.518 5.518 9 C 0.053 3.947 10 C -0.115 4.115 11 C -0.124 4.124 12 C 0.024 3.976 13 H 0.036 0.964 14 C -0.603 4.603 15 H 0.010 0.990 16 C -0.018 4.018 17 N -0.942 5.942 18 Si 1.082 2.918 19 H -0.295 1.295 20 H -0.239 1.239 21 H -0.262 1.262 22 C 0.087 3.913 23 O 0.111 5.889 24 N -0.336 5.336 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.094 0.906 28 H 0.197 0.803 29 H 0.151 0.849 30 H 0.114 0.886 31 H 0.019 0.981 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.022 0.978 36 H 0.050 0.950 37 H 0.249 0.751 38 H 0.064 0.936 39 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.274 12.041 -15.631 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.320 3.680 3 O -0.338 6.338 4 C -0.237 4.237 5 C -0.213 4.213 6 C -0.116 4.116 7 C 0.000 4.000 8 N -0.240 5.240 9 C -0.074 4.074 10 C -0.152 4.152 11 C -0.162 4.162 12 C 0.005 3.995 13 H 0.054 0.946 14 C -0.641 4.641 15 H 0.029 0.971 16 C -0.215 4.215 17 N -0.578 5.578 18 Si 0.903 3.097 19 H -0.221 1.221 20 H -0.163 1.163 21 H -0.187 1.187 22 C -0.041 4.041 23 O 0.035 5.965 24 N -0.038 5.038 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.113 0.887 28 H 0.214 0.786 29 H 0.168 0.832 30 H 0.132 0.868 31 H 0.038 0.962 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 4.679 11.332 -14.448 18.949 hybrid contribution -2.216 1.060 -0.695 2.553 sum 2.462 12.392 -15.143 19.722 Atomic orbital electron populations 1.22221 0.89429 1.06519 1.06309 1.21964 0.92862 0.83807 0.69408 1.90439 1.72991 1.33298 1.37078 1.24590 0.94755 0.95382 1.08996 1.22906 0.95460 0.96435 1.06474 1.26305 0.89469 0.94221 1.01574 1.21524 0.85526 1.01517 0.91457 1.62415 1.40444 1.19454 1.01722 1.22264 0.99588 0.89886 0.95676 1.21645 0.98617 1.00245 0.94734 1.22000 0.97391 0.97469 0.99374 1.18956 0.95613 0.93325 0.91647 0.94589 1.22211 0.98235 1.38691 1.04957 0.97133 1.27235 1.08830 0.92574 0.92904 1.70976 1.00707 1.48358 1.37716 0.83636 0.71119 0.79124 0.75822 1.22126 1.16339 1.18681 1.21853 0.90944 0.96167 0.95141 1.84816 1.13291 1.32968 1.65428 1.74209 1.15092 0.99046 1.15433 0.86942 0.86843 0.88681 0.78618 0.83165 0.86761 0.96236 0.87043 0.90373 0.90462 0.95883 0.93182 0.94196 0.91759 0.98128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.19 10.17 71.24 0.72 -2.47 16 2 C 0.44 10.83 7.27 28.21 0.20 11.03 16 3 O -0.47 -13.23 17.67 -1.64 -0.03 -13.26 16 4 C -0.08 -2.21 7.11 42.81 0.30 -1.91 16 5 C -0.19 -4.59 9.71 22.63 0.22 -4.37 16 6 C -0.05 -1.26 5.00 25.00 0.13 -1.14 16 7 C 0.13 2.59 5.93 85.56 0.51 3.09 16 8 N -0.52 -14.55 4.86 -900.93 -4.38 -18.92 16 9 C 0.05 1.38 5.00 86.33 0.43 1.81 16 10 C -0.11 -3.43 6.09 30.65 0.19 -3.25 16 11 C -0.12 -5.15 4.97 30.67 0.15 -5.00 16 12 C 0.02 1.09 1.84 -11.49 -0.02 1.07 16 13 H 0.04 1.63 6.79 -2.39 -0.02 1.61 16 14 C -0.60 -34.54 8.82 25.60 0.23 -34.32 16 15 H 0.01 0.66 7.99 -2.91 -0.02 0.64 16 16 C -0.02 -1.05 5.34 84.66 0.45 -0.60 16 17 N -0.94 -60.09 13.70 21.45 0.29 -59.79 16 18 Si 1.08 49.70 26.42 68.60 1.81 51.51 16 19 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.24 -9.63 5.57 99.48 0.55 -9.08 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 22 C 0.09 3.36 4.20 86.33 0.36 3.72 16 23 O 0.11 3.36 10.70 71.85 0.77 4.13 16 24 N -0.34 -10.14 11.86 -49.56 -0.59 -10.73 16 25 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 26 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 1.56 7.97 -2.38 -0.02 1.54 16 28 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 29 H 0.15 1.83 8.06 -2.38 -0.02 1.81 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.02 0.56 6.68 -2.38 -0.02 0.55 16 32 H 0.11 2.01 8.06 -2.39 -0.02 1.99 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 2.16 4.86 -2.39 -0.01 2.15 16 37 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 38 H 0.06 2.53 8.12 -2.38 -0.02 2.51 16 39 H 0.00 0.02 6.93 -2.38 -0.02 0.00 16 Total: -1.00 -72.24 317.53 2.62 -69.62 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.86 Total: 9.75 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 3.88 Total: -32.31 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -4.67 Total: -89.44 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.74 Total: -9.13 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.81 Total: 51.51 kcal Total: -72.24 2.62 -69.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661152720.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.502 kcal (2) G-P(sol) polarization free energy of solvation -72.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds