Wall clock time and date at job start Tue Mar 31 2020 01:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47552 * 3.95460 * 3 2 1 5 5 C 1.37092 * 119.99944 * 264.04753 * 4 3 2 6 6 H 1.07999 * 119.99683 * 199.37369 * 5 4 3 7 7 C 1.38951 * 120.00259 * 19.36466 * 5 4 3 8 8 N 1.31417 * 119.99672 * 20.46324 * 7 5 4 9 9 Si 1.86797 * 120.00337 * 200.45973 * 7 5 4 10 10 H 1.48498 * 109.47352 * 90.00016 * 9 7 5 11 11 H 1.48503 * 109.47460 * 210.00539 * 9 7 5 12 12 H 1.48506 * 109.47281 * 330.00396 * 9 7 5 13 13 C 1.34774 * 119.99644 * 84.04065 * 4 3 2 14 14 O 1.21295 * 119.99946 * 183.73591 * 13 4 3 15 15 C 1.50701 * 120.00366 * 3.73646 * 13 4 3 16 16 C 1.53033 * 109.46024 * 149.47173 * 15 13 4 17 17 C 1.53200 * 109.31490 * 181.38504 * 16 15 13 18 18 N 1.46923 * 108.77369 * 305.36497 * 17 16 15 19 19 C 1.34773 * 120.63353 * 233.58372 * 18 17 16 20 20 C 1.50700 * 120.00343 * 180.27501 * 19 18 17 21 21 O 1.21284 * 119.99409 * 359.97438 * 19 18 17 22 22 C 1.46926 * 118.73780 * 53.85728 * 18 17 16 23 23 C 1.53037 * 109.45827 * 269.54014 * 15 13 4 24 24 H 4.40644 * 5.51474 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47240 * 243.95446 * 3 2 1 26 26 H 1.09006 * 109.47130 * 123.95583 * 3 2 1 27 27 H 0.97001 * 119.99680 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46098 * 29.49508 * 15 13 4 29 29 H 1.09002 * 109.50287 * 61.43316 * 16 15 13 30 30 H 1.08999 * 109.52814 * 301.35042 * 16 15 13 31 31 H 1.08990 * 109.58765 * 185.57651 * 17 16 15 32 32 H 1.09006 * 109.70071 * 65.21904 * 17 16 15 33 33 H 1.08998 * 109.46889 * 269.72492 * 20 19 18 34 34 H 1.09000 * 109.46822 * 29.72184 * 20 19 18 35 35 H 1.09000 * 109.47241 * 149.72294 * 20 19 18 36 36 H 1.09001 * 109.58854 * 65.92761 * 22 18 17 37 37 H 1.09004 * 109.58905 * 186.35274 * 22 18 17 38 38 H 1.09007 * 109.49874 * 298.56250 * 23 15 13 39 39 H 1.08999 * 109.50545 * 58.65910 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3771 -0.0953 5 6 3.4799 -2.0621 1.0410 6 1 4.1186 -2.9305 0.9751 7 6 3.0079 -1.6391 2.2776 8 7 1.9456 -0.8686 2.3468 9 14 3.8833 -2.1656 3.8415 10 1 4.9329 -1.1712 4.1801 11 1 2.9029 -2.2487 4.9537 12 1 4.5103 -3.4958 3.6340 13 6 3.2457 -1.9710 -1.3000 14 8 3.5856 -3.1330 -1.3744 15 6 2.9470 -1.1916 -2.5547 16 6 3.8079 -1.7238 -3.7026 17 6 3.5270 -0.9067 -4.9677 18 7 2.0826 -0.9310 -5.2353 19 6 1.6134 -1.3179 -6.4380 20 6 0.1292 -1.3316 -6.6990 21 8 2.3860 -1.6500 -7.3120 22 6 1.1595 -0.5196 -4.1687 23 6 1.4667 -1.3463 -2.9108 24 1 -1.0498 -0.0004 -0.0002 25 1 3.0091 0.4520 0.9233 26 1 3.0090 0.5749 -0.8525 27 1 1.6159 -0.5736 3.2101 28 1 3.1724 -0.1379 -2.3900 29 1 3.5651 -2.7707 -3.8844 30 1 4.8618 -1.6352 -3.4389 31 1 4.0622 -1.3431 -5.8109 32 1 3.8541 0.1227 -4.8204 33 1 -0.2772 -2.3078 -6.4348 34 1 -0.3528 -0.5620 -6.0961 35 1 -0.0558 -1.1347 -7.7550 36 1 1.2970 0.5404 -3.9552 37 1 0.1321 -0.7005 -4.4847 38 1 1.2459 -2.3968 -3.1001 39 1 0.8540 -0.9887 -2.0833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701321501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:47 Heat of formation + Delta-G solvation = -2.860618 kcal Electronic energy + Delta-G solvation = -22344.139173 eV Core-core repulsion = 19060.970874 eV Total energy + Delta-G solvation = -3283.168298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20134 -38.88229 -36.75527 -35.20732 -32.97032 -32.11164 -31.28003 -31.17567 -29.36391 -26.70244 -25.88055 -24.19781 -23.05630 -21.30214 -19.38000 -18.54568 -17.87974 -17.07581 -16.57861 -16.30091 -15.79593 -15.36310 -14.71443 -14.35707 -14.22830 -13.90834 -13.70715 -13.27129 -13.04757 -13.01350 -12.74760 -12.28599 -12.20293 -12.07394 -11.79601 -11.63442 -11.36578 -11.08226 -11.04208 -10.58602 -10.46474 -10.38410 -10.22320 -9.74766 -9.39060 -9.28805 -8.91909 -8.66091 -8.30829 -7.89501 -6.36507 -3.91101 2.64293 3.05827 3.12089 3.23075 3.27422 3.61012 3.83836 3.98102 4.14266 4.57055 4.75949 4.85325 4.98514 5.04722 5.18796 5.22680 5.27600 5.37515 5.41162 5.46764 5.49864 5.65187 5.73120 5.83544 5.89026 6.02861 6.09250 6.22728 6.31909 6.44450 6.62866 6.64664 6.69470 6.95944 7.44181 7.52597 8.02527 8.18660 8.39142 8.72484 9.10567 9.31920 9.88004 10.63997 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030975 B = 0.004831 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.726854 B = 5794.496429 C = 6365.627222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.106 4.106 3 C 0.230 3.770 4 N -0.440 5.440 5 C -0.315 4.315 6 H 0.102 0.898 7 C 0.032 3.968 8 N -0.863 5.863 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.456 3.544 14 O -0.581 6.581 15 C -0.099 4.099 16 C -0.113 4.113 17 C 0.111 3.889 18 N -0.609 5.609 19 C 0.512 3.488 20 C -0.176 4.176 21 O -0.556 6.556 22 C 0.107 3.893 23 C -0.128 4.128 24 H 0.199 0.801 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.268 0.732 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 6.517 -9.584 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.108 4.108 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.442 4.442 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.501 5.501 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.245 3.755 14 O -0.465 6.465 15 C -0.121 4.121 16 C -0.151 4.151 17 C -0.011 4.011 18 N -0.343 5.343 19 C 0.301 3.699 20 C -0.236 4.236 21 O -0.435 6.435 22 C -0.015 4.015 23 C -0.167 4.167 24 H 0.216 0.784 25 H 0.125 0.875 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.570 5.844 -9.893 12.032 hybrid contribution -0.111 -0.126 1.258 1.269 sum -3.682 5.718 -8.635 10.991 Atomic orbital electron populations 1.24229 0.95323 1.02199 1.06344 1.23100 0.94267 0.98194 0.95214 1.18263 0.84386 0.85072 1.01657 1.43716 1.55975 1.10682 1.05459 1.19658 1.28474 1.13280 0.82836 0.88000 1.25288 0.95023 0.97500 0.99397 1.70057 1.18883 1.35365 1.25806 0.86010 0.79055 0.79304 0.80878 1.20340 1.21104 1.19437 1.19992 0.83819 0.87405 0.84327 1.90525 1.52243 1.17129 1.86564 1.21175 0.96037 1.00299 0.94589 1.21719 1.00020 1.00669 0.92733 1.21667 0.80444 1.00295 0.98705 1.48232 1.07708 1.65692 1.12681 1.20775 0.91466 0.76213 0.81482 1.21968 0.92589 1.04590 1.04409 1.90686 1.59459 1.48939 1.44423 1.21975 0.93393 0.98951 0.87208 1.22036 0.96004 1.01142 0.97473 0.78419 0.87501 0.91863 0.92156 0.90118 0.90578 0.90633 0.89086 0.91591 0.88839 0.89843 0.89152 0.91001 0.89361 0.91196 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.90 18.29 29.55 0.54 -4.36 16 2 C -0.11 -2.17 9.55 -37.13 -0.35 -2.52 16 3 C 0.23 4.73 4.92 -6.83 -0.03 4.70 16 4 N -0.44 -10.59 2.60 -117.93 -0.31 -10.89 16 5 C -0.32 -8.42 9.28 -14.94 -0.14 -8.56 16 6 H 0.10 2.90 7.44 -52.49 -0.39 2.51 16 7 C 0.03 0.81 4.87 -17.46 -0.09 0.73 16 8 N -0.86 -21.89 9.49 55.50 0.53 -21.36 16 9 Si 0.92 20.06 29.60 -169.99 -5.03 15.03 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 13 C 0.46 10.54 6.61 -10.99 -0.07 10.47 16 14 O -0.58 -15.73 15.90 5.54 0.09 -15.64 16 15 C -0.10 -1.71 1.85 -91.74 -0.17 -1.87 16 16 C -0.11 -1.81 4.94 -26.61 -0.13 -1.94 16 17 C 0.11 1.52 6.43 -3.71 -0.02 1.49 16 18 N -0.61 -8.02 2.97 -172.50 -0.51 -8.53 16 19 C 0.51 7.00 7.81 -10.99 -0.09 6.91 16 20 C -0.18 -1.61 9.47 36.01 0.34 -1.26 16 21 O -0.56 -9.76 16.51 5.55 0.09 -9.67 16 22 C 0.11 1.23 6.25 -3.48 -0.02 1.21 16 23 C -0.13 -1.96 5.32 -26.39 -0.14 -2.10 16 24 H 0.20 2.98 7.80 -54.10 -0.42 2.56 16 25 H 0.11 2.36 6.54 -51.93 -0.34 2.02 16 26 H 0.06 1.07 5.98 -51.93 -0.31 0.76 16 27 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 28 H 0.08 1.24 5.97 -51.93 -0.31 0.93 16 29 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.58 6.18 -51.93 -0.32 0.26 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.79 5.51 -51.93 -0.29 0.51 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.49 4.91 -51.93 -0.25 1.24 16 LS Contribution 316.36 15.07 4.77 4.77 Total: -1.00 -32.65 316.36 -5.83 -38.48 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.08 Total: 4.92 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.38 Total: 2.90 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.29 Total: -40.78 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: 0.18 Total: -25.31 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.65 -5.83 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701321501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.622 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds