Wall clock time and date at job start Tue Mar 31 2020 01:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47552 * 3.95460 * 3 2 1 5 5 C 1.37092 * 119.99944 * 264.04753 * 4 3 2 6 6 H 1.07999 * 119.99683 * 199.37369 * 5 4 3 7 7 C 1.38951 * 120.00259 * 19.36466 * 5 4 3 8 8 N 1.31417 * 119.99672 * 20.46324 * 7 5 4 9 9 Si 1.86797 * 120.00337 * 200.45973 * 7 5 4 10 10 H 1.48498 * 109.47352 * 90.00016 * 9 7 5 11 11 H 1.48503 * 109.47460 * 210.00539 * 9 7 5 12 12 H 1.48506 * 109.47281 * 330.00396 * 9 7 5 13 13 C 1.34774 * 119.99644 * 84.04065 * 4 3 2 14 14 O 1.21295 * 119.99946 * 183.73591 * 13 4 3 15 15 C 1.50701 * 120.00366 * 3.73646 * 13 4 3 16 16 C 1.53033 * 109.46024 * 149.47173 * 15 13 4 17 17 C 1.53200 * 109.31490 * 181.38504 * 16 15 13 18 18 N 1.46923 * 108.77369 * 305.36497 * 17 16 15 19 19 C 1.34773 * 120.63353 * 233.58372 * 18 17 16 20 20 C 1.50700 * 120.00343 * 180.27501 * 19 18 17 21 21 O 1.21284 * 119.99409 * 359.97438 * 19 18 17 22 22 C 1.46926 * 118.73780 * 53.85728 * 18 17 16 23 23 C 1.53037 * 109.45827 * 269.54014 * 15 13 4 24 24 H 4.40644 * 5.51474 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47240 * 243.95446 * 3 2 1 26 26 H 1.09006 * 109.47130 * 123.95583 * 3 2 1 27 27 H 0.97001 * 119.99680 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46098 * 29.49508 * 15 13 4 29 29 H 1.09002 * 109.50287 * 61.43316 * 16 15 13 30 30 H 1.08999 * 109.52814 * 301.35042 * 16 15 13 31 31 H 1.08990 * 109.58765 * 185.57651 * 17 16 15 32 32 H 1.09006 * 109.70071 * 65.21904 * 17 16 15 33 33 H 1.08998 * 109.46889 * 269.72492 * 20 19 18 34 34 H 1.09000 * 109.46822 * 29.72184 * 20 19 18 35 35 H 1.09000 * 109.47241 * 149.72294 * 20 19 18 36 36 H 1.09001 * 109.58854 * 65.92761 * 22 18 17 37 37 H 1.09004 * 109.58905 * 186.35274 * 22 18 17 38 38 H 1.09007 * 109.49874 * 298.56250 * 23 15 13 39 39 H 1.08999 * 109.50545 * 58.65910 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3771 -0.0953 5 6 3.4799 -2.0621 1.0410 6 1 4.1186 -2.9305 0.9751 7 6 3.0079 -1.6391 2.2776 8 7 1.9456 -0.8686 2.3468 9 14 3.8833 -2.1656 3.8415 10 1 4.9329 -1.1712 4.1801 11 1 2.9029 -2.2487 4.9537 12 1 4.5103 -3.4958 3.6340 13 6 3.2457 -1.9710 -1.3000 14 8 3.5856 -3.1330 -1.3744 15 6 2.9470 -1.1916 -2.5547 16 6 3.8079 -1.7238 -3.7026 17 6 3.5270 -0.9067 -4.9677 18 7 2.0826 -0.9310 -5.2353 19 6 1.6134 -1.3179 -6.4380 20 6 0.1292 -1.3316 -6.6990 21 8 2.3860 -1.6500 -7.3120 22 6 1.1595 -0.5196 -4.1687 23 6 1.4667 -1.3463 -2.9108 24 1 -1.0498 -0.0004 -0.0002 25 1 3.0091 0.4520 0.9233 26 1 3.0090 0.5749 -0.8525 27 1 1.6159 -0.5736 3.2101 28 1 3.1724 -0.1379 -2.3900 29 1 3.5651 -2.7707 -3.8844 30 1 4.8618 -1.6352 -3.4389 31 1 4.0622 -1.3431 -5.8109 32 1 3.8541 0.1227 -4.8204 33 1 -0.2772 -2.3078 -6.4348 34 1 -0.3528 -0.5620 -6.0961 35 1 -0.0558 -1.1347 -7.7550 36 1 1.2970 0.5404 -3.9552 37 1 0.1321 -0.7005 -4.4847 38 1 1.2459 -2.3968 -3.1001 39 1 0.8540 -0.9887 -2.0833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701321501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:46 Heat of formation + Delta-G solvation = -23.974161 kcal Electronic energy + Delta-G solvation = -22345.054725 eV Core-core repulsion = 19060.970874 eV Total energy + Delta-G solvation = -3284.083850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44380 -40.41739 -38.06417 -37.03336 -34.41088 -33.66309 -32.99860 -32.34540 -30.27757 -28.38611 -27.34720 -25.79339 -24.20381 -22.64733 -20.76459 -19.87087 -19.56031 -18.41469 -18.07758 -17.92828 -16.83724 -16.56301 -16.39497 -16.03690 -15.82456 -15.10764 -14.96991 -14.69236 -14.41655 -14.14646 -14.04408 -13.88490 -13.46348 -13.44070 -12.99333 -12.84810 -12.79831 -12.76510 -12.48919 -12.22163 -12.18514 -11.68606 -11.65936 -11.16422 -10.94699 -10.82304 -10.50839 -10.21326 -9.79274 -9.65847 -8.30412 -5.92831 1.36260 1.42631 1.52529 1.62133 1.91947 2.07750 2.17750 2.36942 2.45444 3.05744 3.17213 3.60061 3.78879 3.88238 3.95513 3.98962 4.09079 4.26047 4.33498 4.41354 4.50338 4.58623 4.69038 4.72769 4.81092 4.83050 4.87388 4.96729 5.01217 5.14819 5.19298 5.32749 5.47678 5.51029 5.53636 6.08646 6.44271 6.47686 7.16393 7.17347 7.22712 7.44951 8.02640 8.66959 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030975 B = 0.004831 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.726854 B = 5794.496429 C = 6365.627222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.147 4.147 3 C 0.231 3.769 4 N -0.450 5.450 5 C -0.353 4.353 6 H 0.068 0.932 7 C 0.007 3.993 8 N -0.868 5.868 9 Si 0.979 3.021 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.282 1.282 13 C 0.444 3.556 14 O -0.636 6.636 15 C -0.088 4.088 16 C -0.105 4.105 17 C 0.118 3.882 18 N -0.612 5.612 19 C 0.503 3.497 20 C -0.170 4.170 21 O -0.604 6.604 22 C 0.115 3.885 23 C -0.122 4.122 24 H 0.232 0.768 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.272 0.728 28 H 0.107 0.893 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.044 0.956 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.046 8.852 -9.833 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.149 4.149 3 C 0.109 3.891 4 N -0.167 5.167 5 C -0.481 4.481 6 H 0.086 0.914 7 C -0.197 4.197 8 N -0.504 5.504 9 Si 0.804 3.196 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.234 3.766 14 O -0.523 6.523 15 C -0.109 4.109 16 C -0.144 4.144 17 C -0.005 4.005 18 N -0.344 5.344 19 C 0.294 3.706 20 C -0.228 4.228 21 O -0.486 6.486 22 C -0.007 4.007 23 C -0.161 4.161 24 H 0.249 0.751 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.063 0.937 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.579 8.234 -10.124 14.192 hybrid contribution 0.468 -0.893 1.389 1.716 sum -5.111 7.341 -8.734 12.502 Atomic orbital electron populations 1.25050 0.96174 1.00113 1.04422 1.23192 0.94652 1.00048 0.97004 1.18323 0.85131 0.83302 1.02348 1.43928 1.55805 1.11942 1.05075 1.19499 1.29850 1.13825 0.84901 0.91411 1.25882 0.95276 0.97291 1.01205 1.70138 1.18796 1.34981 1.26526 0.85155 0.78350 0.78518 0.77611 1.18901 1.20266 1.20745 1.21059 0.82366 0.87292 0.85840 1.90481 1.54466 1.19808 1.87558 1.21159 0.97754 1.00457 0.91563 1.21623 0.99718 0.99259 0.93825 1.21558 0.81355 1.01086 0.96487 1.48368 1.07596 1.65318 1.13145 1.21650 0.93189 0.74882 0.80862 1.22011 0.88985 1.06168 1.05670 1.90667 1.61068 1.50932 1.45912 1.22114 0.94663 0.99386 0.84520 1.21979 0.94110 1.00540 0.99483 0.75095 0.89433 0.88155 0.91813 0.87510 0.93878 0.90964 0.90287 0.88742 0.87847 0.86884 0.88335 0.88241 0.86016 0.93712 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.22 18.29 74.32 1.36 -6.86 16 2 C -0.15 -5.75 9.55 31.12 0.30 -5.45 16 3 C 0.23 9.36 4.92 84.57 0.42 9.78 16 4 N -0.45 -22.12 2.60 -645.41 -1.68 -23.80 16 5 C -0.35 -19.58 9.28 84.04 0.78 -18.80 16 6 H 0.07 4.13 7.44 -2.91 -0.02 4.10 16 7 C 0.01 0.38 4.87 84.93 0.41 0.79 16 8 N -0.87 -43.50 9.49 21.66 0.21 -43.30 16 9 Si 0.98 41.43 29.60 68.60 2.03 43.46 16 10 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.44 21.16 6.61 87.66 0.58 21.74 16 14 O -0.64 -36.50 15.90 -3.08 -0.05 -36.55 16 15 C -0.09 -2.97 1.85 -11.52 -0.02 -2.99 16 16 C -0.11 -3.41 4.94 30.67 0.15 -3.26 16 17 C 0.12 3.05 6.43 86.37 0.56 3.61 16 18 N -0.61 -14.60 2.97 -818.05 -2.43 -17.02 16 19 C 0.50 12.75 7.81 87.66 0.68 13.44 16 20 C -0.17 -2.49 9.47 71.24 0.67 -1.82 16 21 O -0.60 -20.89 16.51 -3.04 -0.05 -20.94 16 22 C 0.11 2.18 6.25 86.51 0.54 2.72 16 23 C -0.12 -3.55 5.32 30.82 0.16 -3.38 16 24 H 0.23 5.97 7.80 -4.43 -0.03 5.94 16 25 H 0.09 3.85 6.54 -2.39 -0.02 3.83 16 26 H 0.10 3.18 5.98 -2.38 -0.01 3.17 16 27 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 28 H 0.11 3.02 5.97 -2.39 -0.01 3.00 16 29 H 0.04 1.66 7.90 -2.39 -0.02 1.64 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.08 2.28 7.00 -2.39 -0.02 2.26 16 32 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 0.97 6.18 -2.39 -0.01 0.96 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.12 1.55 5.51 -2.38 -0.01 1.53 16 38 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.09 2.63 4.91 -2.39 -0.01 2.62 16 Total: -1.00 -75.46 316.36 5.69 -69.77 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.06 Total: 18.86 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 6.59 Total: 9.51 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -3.90 Total: -84.11 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -0.10 Total: -57.49 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -75.46 5.69 -69.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701321501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.795 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds